Rorug06G0222000

auxin-binding protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
35509388 .. 35512068
2681 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0222000.1

Sequence Viewer

Length: 1158 bp
ATGAATAAGGGAGGGTCTCGGTTAGTGTCGAAGGTGCAGCAGCCGATTGGGCAGAAGAGGCTGACGAACGTGGCGGTGGTGCGTCTCAAGAAGCGCGGCAACCGCTTCGAAATTGCTTGCTACAAGAACAAGGTCCTCTCGTGGCGCTCCGGCGTAGAGAAAGATTTGGATGAGGTGTTGCAGTCAAAGACGGTGTACTCGAATGTTTCCAAAGGTGTTCTTGCCAAGACCAAGGATTTGGTAGCTGCGTTTGGGTCGGATGATCAGACCAAGATTTGTTTAGAGATCTTGGATAAAGGGGAGCTTCAGGTCGCTGGGAAGGAGAGAGAATCTCAGTTGTCCAGTCAGTTTCGGGATATCGCTACTATTGTGATGCAGAAAACCTATAATCCAGAGACTCGCCGCCCTTACACTATCAGTTTGATTGAGAGGTTGATGCACGAAATTCATTTTGCTGTGGATCCACACAGTGGCTCAAAGAAGCAGGCCCTTGAAGTCATTCATGAGCTGCAAAAGCAGTTCCCGATCAAACGGTCTCCCATGAGGTTGCGACTCACGGTTCCTGAACAGGAAGTCTCAGCACTCCTGGAGAAGCTTACAACTTGGAATGCTTCCATTGTTTCAAAAGATCCATCAGGAAATCAGCTATCCATTATCTGTGAACTGGACCCTGGTTTGTATCGGGACTGTGAGGGTTTGTTGATGACACTGCATGGAAAGTATGAAGTCCTTGCTCTCTCTGTGCATGCAGAGGGTGACACAGTTATTGATCAACACGAAGAATATGAGGACGAACTGCCACGCTCACTCATTGAATCGGCTGATTCTGAATCATCAAAGAAGAAAGAAACTAGTCCTTCTGACTTGCCAAAGAAGGATTCATCTGATCCAGTAATGCAACTGAGTGAGAAAATGCAAACACAGAGCATCTCTACTGGGAATGTGAAGGCCACAGGGGAAGGAAAACAAAGCAAATGCAGCACTTGCAATGCATTTTTTGGTGATTCCAAGCAGTTCAGGGATCACTTCAAGAGTGAGTGGCACAAGCATAATTTGAAACGCAAGAGCAAGGAACTTCCTCCTCTCACAGAAGATGAGTGTGCAGCTGACATTGACATGGATGACTCTAAGGCGGATTTGAAGGATTATTCTTTCTGA

Protein Analysis

385

Amino Acids

43.39

Weight (kDa)

6.81

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SBDS_N PF01172 23 - 109 8.3e-29 Shwachman-Bodian-Diamond syndrome (SBDS) N-terminal domain
SBDS_domain_II PF09377 118 - 178 1.2e-22 SBDS protein, domain II
SBDS_C PF20268 181 - 243 1.8e-10 SBDS protein, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 470
AccII CGCG 1 cut(s) 96
AciI CCGC 5 cut(s) 74, 96, 103, 403, 1133
AclWI GGATC 5 cut(s) 455, 468, 623, 881, 1029
AcsI RAATTY 1 cut(s) 444
AcuI CTGAAG 1 cut(s) 290
AdeI CACNNNGTG 1 cut(s) 470
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 470
AgsI TTSAA 6 cut(s) 494, 624, 815, 1030, 1057, 1141
AhlI ACTAGT 1 cut(s) 851
AjnI CCWGG 2 cut(s) 585, 670
AjuI GAANNNNNNNTTGG 2 cut(s) 862, 894
AluBI AGCT 6 cut(s) 245, 304, 508, 595, 646, 1106
AluI AGCT 6 cut(s) 245, 304, 508, 595, 646, 1106
Alw26I GTCTC 5 cut(s) 21, 89, 389, 540, 580
AlwI GGATC 5 cut(s) 455, 468, 623, 881, 1029
AoxI GGCC 2 cut(s) 486, 948
ApeKI GCWGC 6 cut(s) 37, 40, 245, 508, 978, 1103
ApoI RAATTY 1 cut(s) 444
ArsI GACNNNNNNTTYG 2 cut(s) 220, 252
Asp700I GAANNNNTTC 1 cut(s) 498
AspLEI GCGC 2 cut(s) 96, 147
AspS9I GGNCC 3 cut(s) 133, 487, 667
AsuHPI GGTGA 2 cut(s) 767, 1013
AsuII TTCGAA 1 cut(s) 108
AvaII GGWCC 2 cut(s) 133, 667
BamHI GGATCC 1 cut(s) 460
BauI CACGAG 1 cut(s) 139
BbvI GCAGC 6 cut(s) 49, 52, 232, 495, 990, 1115
BccI CCATC 1 cut(s) 640
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 2 cut(s) 587, 672
BclI TGATCA 2 cut(s) 262, 769
BcoDI GTCTC 5 cut(s) 21, 89, 389, 540, 580
BcuI ACTAGT 1 cut(s) 851
BfaI CTAG 1 cut(s) 852
BfoI RGCGCY 1 cut(s) 148
BglI GCCNNNNNGGC 1 cut(s) 49
BglII AGATCT 1 cut(s) 285
BisI GCNGC 8 cut(s) 38, 41, 97, 246, 403, 509, 979, 1104
BlsI GCNGC 8 cut(s) 39, 42, 98, 247, 404, 510, 980, 1105
Bme1390I CCNGG 2 cut(s) 587, 672
Bme18I GGWCC 2 cut(s) 133, 667
BmgT120I GGNCC 3 cut(s) 133, 487, 667
BmiI GGNNCC 3 cut(s) 462, 561, 669
BmrFI CCNGG 2 cut(s) 587, 672
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 3 cut(s) 363, 426, 936
BmuI ACTGGG 1 cut(s) 945
BplI GAGNNNNNCTC 2 cut(s) 316, 348
BpmI CTGGAG 1 cut(s) 608
Bpu14I TTCGAA 1 cut(s) 108
BpuEI CTTGAG 1 cut(s) 71
BsaI GGTCTC 2 cut(s) 21, 540
BsaJI CCNNGG 2 cut(s) 231, 670
Bsc4I CCNNNNNNNGG 1 cut(s) 470
Bse1I ACTGG 4 cut(s) 342, 669, 890, 940
Bse3DI GCAATG 1 cut(s) 994
BseBI CCWGG 2 cut(s) 587, 672
BseDI CCNNGG 2 cut(s) 231, 670
BseGI GGATG 3 cut(s) 175, 265, 1126
BseLI CCNNNNNNNGG 1 cut(s) 470
BseMI GCAATG 1 cut(s) 994
BseMII CTCAG 3 cut(s) 347, 591, 893
BseNI ACTGG 4 cut(s) 342, 669, 890, 940
BseRI GAGGAG 1 cut(s) 1071
BseXI GCAGC 6 cut(s) 49, 52, 232, 495, 990, 1115
BseYI CCCAGC 1 cut(s) 314
BsgI GTGCAG 2 cut(s) 56, 1122
Bsh1236I CGCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 488, 950
BsiSI CCGG 1 cut(s) 150
BslFI GGGAC 1 cut(s) 698
BslI CCNNNNNNNGG 1 cut(s) 470
BsmAI GTCTC 5 cut(s) 21, 89, 389, 540, 580
BsmBI CGTCTC 1 cut(s) 89
BsmFI GGGAC 1 cut(s) 698
BsmI GAATGC 1 cut(s) 613
BsnI GGCC 2 cut(s) 488, 950
Bso31I GGTCTC 2 cut(s) 21, 540
Bsp119I TTCGAA 1 cut(s) 108
Bsp143I GATC 8 cut(s) 262, 285, 460, 525, 628, 769, 886, 1021
BspACI CCGC 5 cut(s) 74, 96, 103, 403, 1133
BspANI GGCC 2 cut(s) 488, 950
BspCNI CTCAG 3 cut(s) 346, 590, 894
BspFNI CGCG 1 cut(s) 96
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 3 cut(s) 462, 561, 669
BspPI GGATC 5 cut(s) 455, 468, 623, 881, 1029
BspT104I TTCGAA 1 cut(s) 108
BspTNI GGTCTC 2 cut(s) 21, 540
BsrDI GCAATG 1 cut(s) 994
BsrI ACTGG 4 cut(s) 342, 669, 890, 940
BssECI CCNNGG 2 cut(s) 231, 670
BssMI GATC 8 cut(s) 262, 285, 460, 525, 628, 769, 886, 1021
BssSI CACGAG 1 cut(s) 139
BssT1I CCWWGG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 139
Bst2UI CCWGG 2 cut(s) 587, 672
Bst4CI ACNGT 6 cut(s) 193, 470, 534, 559, 689, 763
Bst6I CTCTTC 1 cut(s) 50
BstAPI GCANNNNNTGC 1 cut(s) 984
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 3 cut(s) 118, 486, 747
BstDEI CTNAG 4 cut(s) 333, 577, 902, 1128
BstF5I GGATG 3 cut(s) 175, 265, 1126
BstFNI CGCG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 148
BstHHI GCGC 2 cut(s) 96, 147
BstKTI GATC 8 cut(s) 265, 288, 463, 528, 631, 772, 889, 1024
BstMAI GTCTC 5 cut(s) 21, 89, 389, 540, 580
BstMBI GATC 8 cut(s) 262, 285, 460, 525, 628, 769, 886, 1021
BstMWI GCNNNNNNNGC 6 cut(s) 49, 58, 102, 514, 978, 984
BstNI CCWGG 2 cut(s) 587, 672
BstNSI RCATGY 1 cut(s) 749
BstSCI CCNGG 2 cut(s) 585, 670
BstUI CGCG 1 cut(s) 96
BstV1I GCAGC 6 cut(s) 49, 52, 232, 495, 990, 1115
BstX2I RGATCY 3 cut(s) 285, 460, 628
BstXI CCANNNNNNTGG 1 cut(s) 238
BstYI RGATCY 3 cut(s) 285, 460, 628
BsuRI GGCC 2 cut(s) 488, 950
BtsCI GGATG 3 cut(s) 175, 265, 1126
BtsI GCAGTG 1 cut(s) 707
BtsIMutI CAGTG 2 cut(s) 475, 707
Cac8I GCNNGC 3 cut(s) 118, 486, 747
CciI TCATGA 1 cut(s) 502
CfoI GCGC 2 cut(s) 96, 147
Cfr13I GGNCC 3 cut(s) 133, 487, 667
CseI GACGC 1 cut(s) 71
Csp6I GTAC 1 cut(s) 196
CviAII CATG 5 cut(s) 503, 541, 713, 746, 1117
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 4 cut(s) 333, 577, 902, 1128
DpnI GATC 8 cut(s) 264, 287, 462, 527, 630, 771, 888, 1023
DpnII GATC 8 cut(s) 262, 285, 460, 525, 628, 769, 886, 1021
DraIII CACNNNGTG 1 cut(s) 470
Eam1104I CTCTTC 1 cut(s) 50
EarI CTCTTC 1 cut(s) 50
EciI GGCGGA 1 cut(s) 1148
Eco130I CCWWGG 1 cut(s) 231
Eco31I GGTCTC 2 cut(s) 21, 540
Eco32I GATATC 1 cut(s) 358
Eco47I GGWCC 2 cut(s) 133, 667
Eco57I CTGAAG 1 cut(s) 290
EcoO109I RGGNCCY 2 cut(s) 133, 487
EcoRII CCWGG 2 cut(s) 585, 670
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 1 cut(s) 231
EcoT22I ATGCAT 1 cut(s) 994
ErhI CCWWGG 1 cut(s) 231
Esp3I CGTCTC 1 cut(s) 89
FaeI CATG 5 cut(s) 506, 544, 716, 749, 1120
FaiI YATR 9 cut(s) 387, 504, 542, 714, 723, 747, 786, 1050, 1118
FalI AAGNNNNNCTT 4 cut(s) 204, 236, 288, 320
FaqI GGGAC 1 cut(s) 698
FatI CATG 5 cut(s) 502, 540, 712, 745, 1116
FbaI TGATCA 2 cut(s) 262, 769
Fnu4HI GCNGC 8 cut(s) 38, 41, 97, 246, 403, 509, 979, 1104
FokI GGATG 3 cut(s) 182, 272, 1133
Fsp4HI GCNGC 8 cut(s) 38, 41, 97, 246, 403, 509, 979, 1104
FspBI CTAG 1 cut(s) 852
GlaI GCGC 2 cut(s) 95, 146
GluI GCNGC 8 cut(s) 38, 41, 97, 246, 403, 509, 979, 1104
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 608
HaeII RGCGCY 1 cut(s) 148
HaeIII GGCC 2 cut(s) 488, 950
HapII CCGG 1 cut(s) 150
HgaI GACGC 1 cut(s) 71
HhaI GCGC 2 cut(s) 96, 147
Hin1II CATG 5 cut(s) 506, 544, 716, 749, 1120
Hin6I GCGC 2 cut(s) 94, 145
HinP1I GCGC 2 cut(s) 94, 145
HindIII AAGCTT 1 cut(s) 593
HinfI GANTC 9 cut(s) 329, 397, 552, 815, 824, 830, 878, 1004, 1124
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 767, 1013
Hpy166II GTNNAC 2 cut(s) 196, 662
Hpy188I TCNGA 6 cut(s) 259, 267, 829, 862, 886, 1157
Hpy188III TCNNGA 9 cut(s) 88, 353, 392, 503, 523, 563, 636, 683, 1030
Hpy8I GTNNAC 2 cut(s) 196, 662
HpyAV CCTTC 7 cut(s) 25, 313, 867, 868, 940, 953, 1135
HpyCH4III ACNGT 6 cut(s) 193, 470, 534, 559, 689, 763
HpyCH4IV ACGT 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 6 cut(s) 49, 58, 102, 514, 978, 984
HpyF3I CTNAG 4 cut(s) 333, 577, 902, 1128
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 5 cut(s) 506, 544, 716, 749, 1120
HspAI GCGC 2 cut(s) 94, 145
Ksp22I TGATCA 2 cut(s) 262, 769
Kzo9I GATC 8 cut(s) 262, 285, 460, 525, 628, 769, 886, 1021
LmnI GCTCC 2 cut(s) 152, 301
Lsp1109I GCAGC 6 cut(s) 49, 52, 232, 495, 990, 1115
LweI GCATC 3 cut(s) 363, 426, 936
MaeI CTAG 1 cut(s) 852
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 755
MalI GATC 8 cut(s) 264, 287, 462, 527, 630, 771, 888, 1023
MboI GATC 8 cut(s) 262, 285, 460, 525, 628, 769, 886, 1021
MboII GAAGA 4 cut(s) 67, 791, 853, 1103
MflI RGATCY 3 cut(s) 285, 460, 628
MluCI AATT 3 cut(s) 111, 444, 1051
MlyI GAGTC 3 cut(s) 391, 546, 1118
MmeI TCCRAC 1 cut(s) 237
Mph1103I ATGCAT 1 cut(s) 994
MroXI GAANNNNTTC 1 cut(s) 498
MslI CAYNNNNRTG 1 cut(s) 1115
MspA1I CMGCKG 1 cut(s) 1106
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 2 cut(s) 587, 672
Mva1269I GAATGC 1 cut(s) 613
MvaI CCWGG 2 cut(s) 587, 672
MvnI CGCG 1 cut(s) 96
MwoI GCNNNNNNNGC 6 cut(s) 49, 58, 102, 514, 978, 984
NdeII GATC 8 cut(s) 262, 285, 460, 525, 628, 769, 886, 1021
NlaIII CATG 5 cut(s) 506, 544, 716, 749, 1120
NlaIV GGNNCC 3 cut(s) 462, 561, 669
NmuCI GTSAC 1 cut(s) 755
NsiI ATGCAT 1 cut(s) 994
NspI RCATGY 1 cut(s) 749
NspV TTCGAA 1 cut(s) 108
PaeI GCATGC 1 cut(s) 749
PagI TCATGA 1 cut(s) 502
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PctI GAATGC 1 cut(s) 613
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 6 cut(s) 329, 815, 824, 830, 878, 1004
PflMI CCANNNNNTGG 1 cut(s) 470
PfoI TCCNGGA 1 cut(s) 585
PkrI GCNGC 8 cut(s) 39, 42, 98, 247, 404, 510, 980, 1105
PleI GAGTC 3 cut(s) 391, 546, 1118
PpsI GAGTC 3 cut(s) 391, 546, 1118
PpuMI RGGWCCY 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 133
Psp6I CCWGG 2 cut(s) 585, 670
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 2 cut(s) 585, 670
PspN4I GGNNCC 3 cut(s) 462, 561, 669
PspPI GGNCC 3 cut(s) 133, 487, 667
PspPPI RGGWCCY 1 cut(s) 133
PsuI RGATCY 3 cut(s) 285, 460, 628
PvuII CAGCTG 1 cut(s) 1106
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
RseI CAYNNNNRTG 1 cut(s) 1115
SatI GCNGC 8 cut(s) 38, 41, 97, 246, 403, 509, 979, 1104
Sau3AI GATC 8 cut(s) 262, 285, 460, 525, 628, 769, 886, 1021
Sau96I GGNCC 3 cut(s) 133, 487, 667
SchI GAGTC 3 cut(s) 391, 546, 1118
ScrFI CCNGG 2 cut(s) 587, 672
SfaNI GCATC 3 cut(s) 363, 426, 936
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 2 cut(s) 133, 667
SmiMI CAYNNNNRTG 1 cut(s) 1115
SmlI CTYRAG 1 cut(s) 86
SmoI CTYRAG 1 cut(s) 86
SpeI ACTAGT 1 cut(s) 851
SphI GCATGC 1 cut(s) 749
Sse9I AATT 3 cut(s) 111, 444, 1051
SsiI CCGC 5 cut(s) 74, 96, 103, 403, 1133
SspMI CTAG 1 cut(s) 852
StyD4I CCNGG 2 cut(s) 585, 670
StyI CCWWGG 1 cut(s) 231
TaaI ACNGT 6 cut(s) 193, 470, 534, 559, 689, 763
TaiI ACGT 1 cut(s) 72
TaqI TCGA 3 cut(s) 29, 108, 200
TasI AATT 3 cut(s) 111, 444, 1051
TatI WGTACW 1 cut(s) 195
TauI GCSGC 2 cut(s) 99, 405
TfiI GAWTC 6 cut(s) 329, 815, 824, 830, 878, 1004
TscAI CASTG 2 cut(s) 475, 714
TseFI GTSAC 1 cut(s) 755
TseI GCWGC 6 cut(s) 37, 40, 245, 508, 978, 1103
Tsp45I GTSAC 1 cut(s) 755
TspDTI ATGAA 5 cut(s) 17, 437, 491, 738, 870
TspRI CASTG 2 cut(s) 475, 714
Van91I CCANNNNNTGG 1 cut(s) 470
VpaK11BI GGWCC 2 cut(s) 133, 667
XapI RAATTY 1 cut(s) 444
XceI RCATGY 1 cut(s) 749
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 1 cut(s) 852
Zsp2I ATGCAT 1 cut(s) 994
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.