Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Forward (+)

15016773 .. 15018218

Gene Structure 1446 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012075

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGCTCAGTTCAAGGGTTGGATTGGTGATTAGTGTGACTGGAACCCTGATGGTTGAGGTTTGGCTACAAACATTTTCTCCAGGGTCAGGCACACCGATACACAGGCATTCTTGTGAAGAAGTGTTTGTTGTCCTAAAGGGTAGTGGAACAGTGTACCTAGCACCAAGCTCACACGAGAAGCACCCTGGAAAACCAGAAGAGTTCTTTATCTTTGCAAATAGCACATTTCACGTCCCTGTTAACGATGTTCACCAGGTGCAAAATACAAATGAGCACGAGGATTTGCAGGTGCTTGTTGTCATATCTCGTCCGCCCGTTAAAGTGTTCATGTATGAAAACTGGTCAATGCCGCACACTGCAGCGAAACTAAAGTTCCCCTACTTTTGGGACGAAGAATGCCTTGAACTGGAACCACCTCCAAAGGATGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

145

Amino Acids

16.33

Weight (kDa)

5.39

Isoelectric Point (pI)

49.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	14 - 136	1.8e-71	Auxin binding protein
Cupin_2	PF07883	21 - 100	1e-07	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	277
Acc36I	ACCTGC	1 cut(s)	277
AciI	CCGC	2 cut(s)	311, 350
AdeI	CACNNNGTG	1 cut(s)	256
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	3 cut(s)	86, 384, 406
AgsI	TTSAA	2 cut(s)	12, 404
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	3 cut(s)	79, 184, 252
AluBI	AGCT	2 cut(s)	168, 430
AluI	AGCT	2 cut(s)	168, 430
Alw21I	GWGCWC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	359
AsuHPI	GGTGA	2 cut(s)	37, 242
BauI	CACGAG	2 cut(s)	173, 275
Bbv12I	GWGCWC	1 cut(s)	276
BbvI	GCAGC	1 cut(s)	371
BccI	CCATC	1 cut(s)	43
BciT130I	CCWGG	3 cut(s)	81, 186, 254
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	1 cut(s)	357
BfuAI	ACCTGC	1 cut(s)	277
BisI	GCNGC	2 cut(s)	350, 360
BlsI	GCNGC	2 cut(s)	351, 361
Bme1390I	CCNGG	3 cut(s)	81, 186, 254
BmgBI	CACGTC	1 cut(s)	232
BmiI	GGNNCC	2 cut(s)	43, 411
BmrFI	CCNGG	3 cut(s)	81, 186, 254
BpmI	CTGGAG	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	80, 184
BsaXI	ACNNNNNCTCC	2 cut(s)	61, 91
Bsc4I	CCNNNNNNNGG	3 cut(s)	86, 384, 406
Bse1I	ACTGG	3 cut(s)	43, 344, 411
BseBI	CCWGG	3 cut(s)	81, 186, 254
BseDI	CCNNGG	2 cut(s)	80, 184
BseGI	GGATG	1 cut(s)	430
BseLI	CCNNNNNNNGG	3 cut(s)	86, 384, 406
BseMII	CTCAG	1 cut(s)	19
BseNI	ACTGG	3 cut(s)	43, 344, 411
BseXI	GCAGC	1 cut(s)	371
BsiHKAI	GWGCWC	1 cut(s)	276
BslFI	GGGAC	2 cut(s)	218, 401
BslI	CCNNNNNNNGG	3 cut(s)	86, 384, 406
BsmFI	GGGAC	2 cut(s)	218, 401
BsmI	GAATGC	2 cut(s)	106, 401
Bsp1286I	GDGCHC	1 cut(s)	276
BspACI	CCGC	2 cut(s)	311, 350
BspCNI	CTCAG	1 cut(s)	18
BspLI	GGNNCC	2 cut(s)	43, 411
BspMAI	CTGCAG	1 cut(s)	361
BspMI	ACCTGC	1 cut(s)	277
BsrI	ACTGG	3 cut(s)	43, 344, 411
BssECI	CCNNGG	2 cut(s)	80, 184
BssSI	CACGAG	2 cut(s)	173, 275
Bst2BI	CACGAG	2 cut(s)	173, 275
Bst2UI	CCWGG	3 cut(s)	81, 186, 254
Bst4CI	ACNGT	1 cut(s)	151
Bst6I	CTCTTC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	430
BstNI	CCWGG	3 cut(s)	81, 186, 254
BstSCI	CCNGG	3 cut(s)	79, 184, 252
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	1 cut(s)	371
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	1 cut(s)	430
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	2 cut(s)	156, 354
BveI	ACCTGC	1 cut(s)	277
CsiI	ACCWGGT	1 cut(s)	252
Csp6I	GTAC	1 cut(s)	154
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	3 cut(s)	64, 168, 430
CviKI_1	RGCY	3 cut(s)	64, 168, 430
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	1 cut(s)	5
DraIII	CACNNNGTG	1 cut(s)	256
Eam1104I	CTCTTC	1 cut(s)	192
EarI	CTCTTC	1 cut(s)	192
EciI	GGCGGA	1 cut(s)	300
EcoRII	CCWGG	3 cut(s)	79, 184, 252
FaeI	CATG	1 cut(s)	331
FaiI	YATR	3 cut(s)	302, 329, 333
FalI	AAGNNNNNCTT	2 cut(s)	384, 416
FaqI	GGGAC	2 cut(s)	218, 401
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	2 cut(s)	350, 360
Fsp4HI	GCNGC	2 cut(s)	350, 360
FspBI	CTAG	1 cut(s)	158
GluI	GCNGC	2 cut(s)	350, 360
GsuI	CTGGAG	1 cut(s)	63
Hin1II	CATG	1 cut(s)	331
HincII	GTYRAC	1 cut(s)	241
HindII	GTYRAC	1 cut(s)	241
HpaI	GTTAAC	1 cut(s)	241
HphI	GGTGA	2 cut(s)	37, 242
Hpy166II	GTNNAC	3 cut(s)	154, 241, 250
Hpy8I	GTNNAC	3 cut(s)	154, 241, 250
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	4 cut(s)	215, 259, 286, 359
HpyF3I	CTNAG	1 cut(s)	5
HpySE526I	ACGT	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	331
KspAI	GTTAAC	1 cut(s)	241
Lsp1109I	GCAGC	1 cut(s)	371
MabI	ACCWGGT	1 cut(s)	252
MaeI	CTAG	1 cut(s)	158
MaeII	ACGT	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	34
MboII	GAAGA	3 cut(s)	128, 209, 404
MhlI	GDGCHC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	49, 271, 426
MseI	TTAA	2 cut(s)	240, 318
MslI	CAYNNNNRTG	1 cut(s)	111
MspR9I	CCNGG	3 cut(s)	81, 186, 254
Mva1269I	GAATGC	2 cut(s)	106, 401
MvaI	CCWGG	3 cut(s)	81, 186, 254
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	2 cut(s)	43, 411
NmuCI	GTSAC	1 cut(s)	34
PaqCI	CACCTGC	1 cut(s)	277
PctI	GAATGC	2 cut(s)	106, 401
PkrI	GCNGC	2 cut(s)	351, 361
Psp6I	CCWGG	3 cut(s)	79, 184, 252
PspGI	CCWGG	3 cut(s)	79, 184, 252
PspN4I	GGNNCC	2 cut(s)	43, 411
PstI	CTGCAG	1 cut(s)	361
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
RseI	CAYNNNNRTG	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	240, 318
SatI	GCNGC	2 cut(s)	350, 360
ScrFI	CCNGG	3 cut(s)	81, 186, 254
SduI	GDGCHC	1 cut(s)	276
SetI	ASST	8 cut(s)	60, 159, 170, 234, 258, 291, 418, 432
SexAI	ACCWGGT	1 cut(s)	252
SfcI	CTRYAG	1 cut(s)	357
SmiMI	CAYNNNNRTG	1 cut(s)	111
SsiI	CCGC	2 cut(s)	311, 350
SspMI	CTAG	1 cut(s)	158
StyD4I	CCNGG	3 cut(s)	79, 184, 252
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	234
TauI	GCSGC	1 cut(s)	352
Tru1I	TTAA	2 cut(s)	240, 318
Tru9I	TTAA	2 cut(s)	240, 318
TscAI	CASTG	2 cut(s)	156, 361
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	359
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	2 cut(s)	316, 348
TspRI	CASTG	2 cut(s)	156, 361
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.