Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

57518638 .. 57520358

Gene Structure 1721 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG343200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGAAACTGGCACGGTCGTTGTGCCTTATCCCACATCCCATAGGCTAAACGGGTACGAGTTCGGGTCACGGGTCAAAACAGATATTTATAATGTGGGCCGTTGCTTTGATCCAACGGCTCATATTCCTTCACAGTTTCCTGTGGTAAGGAATATCAGTGAGCTTCCGCAGAATAACTATGGAAGGGGAGGGTTGGCACACACTACTGTTGCAGGCTCACTCTTGCATGGCTTGAAAGAGGTTGAGGTTTGGCTACAAACATTTTCTCCAGGGTCAGGCACACCGATACACAGGCATTCTTGTGAAGAAGTGTTTGTTGTCCTAAAGGGTAGTGGAACTGTGTACCTAGCACCAAGCTCACACGAGAAGTACCCTGGAAAACCAGAAGAGTTCTTCATCTTTGCAAATAGCACATTTCACGTCCCTGTTAACGATGTTCACCAGGTGCAAAATACAAATGAGCACGAGGATTTGCAGGTGCTTGTTGTCATATCTCGTCCACCCGTTAAAGTGTTCATGTATGAAAACTGGTCAATGCCTCACACTGCAGCGAAACTAAAGTTCCCCTTCTTTTGGGACGAAGAATGCCTTGAACTGGAACCACCTCCAAAGGATGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

208

Amino Acids

23.48

Weight (kDa)

5.62

Isoelectric Point (pI)

49.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	46 - 200	1e-91	Auxin binding protein
Cupin_2	PF07883	85 - 164	5.1e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	93
AarI	CACCTGC	1 cut(s)	469
Acc36I	ACCTGC	1 cut(s)	469
AciI	CCGC	1 cut(s)	170
AclWI	GGATC	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	448
AfaI	GTAC	3 cut(s)	59, 347, 374
AfiI	CCNNNNNNNGG	3 cut(s)	278, 576, 598
AgsI	TTSAA	2 cut(s)	238, 596
AjiI	CACGTC	1 cut(s)	424
AjnI	CCWGG	3 cut(s)	271, 376, 444
AluBI	AGCT	3 cut(s)	166, 360, 622
AluI	AGCT	3 cut(s)	166, 360, 622
Alw21I	GWGCWC	1 cut(s)	468
AlwI	GGATC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	551
AspS9I	GGNCC	1 cut(s)	100
AsuHPI	GGTGA	1 cut(s)	434
BauI	CACGAG	2 cut(s)	365, 467
Bbv12I	GWGCWC	1 cut(s)	468
BbvI	GCAGC	1 cut(s)	563
BceAI	ACGGC	2 cut(s)	87, 135
BciT130I	CCWGG	3 cut(s)	273, 378, 446
BfaI	CTAG	1 cut(s)	350
BfmI	CTRYAG	1 cut(s)	549
BfuAI	ACCTGC	1 cut(s)	469
BisI	GCNGC	1 cut(s)	552
BlsI	GCNGC	1 cut(s)	553
Bme1390I	CCNGG	3 cut(s)	273, 378, 446
BmgBI	CACGTC	1 cut(s)	424
BmgT120I	GGNCC	1 cut(s)	100
BmiI	GGNNCC	1 cut(s)	603
BmrFI	CCNGG	3 cut(s)	273, 378, 446
BpmI	CTGGAG	1 cut(s)	255
BsaJI	CCNNGG	2 cut(s)	272, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	253, 283
Bsc4I	CCNNNNNNNGG	3 cut(s)	278, 576, 598
Bse1I	ACTGG	3 cut(s)	16, 536, 603
BseBI	CCWGG	3 cut(s)	273, 378, 446
BseDI	CCNNGG	2 cut(s)	272, 376
BseGI	GGATG	2 cut(s)	38, 622
BseLI	CCNNNNNNNGG	3 cut(s)	278, 576, 598
BseNI	ACTGG	3 cut(s)	16, 536, 603
BseXI	GCAGC	1 cut(s)	563
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	1 cut(s)	102
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	468
BslFI	GGGAC	2 cut(s)	410, 593
BslI	CCNNNNNNNGG	3 cut(s)	278, 576, 598
BsmFI	GGGAC	2 cut(s)	410, 593
BsmI	GAATGC	2 cut(s)	298, 593
BsnI	GGCC	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	468
Bsp143I	GATC	1 cut(s)	112
BspACI	CCGC	1 cut(s)	170
BspANI	GGCC	1 cut(s)	102
BspLI	GGNNCC	1 cut(s)	603
BspMAI	CTGCAG	1 cut(s)	553
BspMI	ACCTGC	1 cut(s)	469
BspPI	GGATC	1 cut(s)	107
BsrI	ACTGG	3 cut(s)	16, 536, 603
BssECI	CCNNGG	2 cut(s)	272, 376
BssMI	GATC	1 cut(s)	112
BssSI	CACGAG	2 cut(s)	365, 467
Bst2BI	CACGAG	2 cut(s)	365, 467
Bst2UI	CCWGG	3 cut(s)	273, 378, 446
Bst4CI	ACNGT	4 cut(s)	19, 138, 211, 343
Bst6I	CTCTTC	1 cut(s)	384
BstC8I	GCNNGC	1 cut(s)	217
BstF5I	GGATG	2 cut(s)	38, 622
BstKTI	GATC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	112
BstMCI	CGRYCG	1 cut(s)	21
BstNI	CCWGG	3 cut(s)	273, 378, 446
BstSCI	CCNGG	3 cut(s)	271, 376, 444
BstSFI	CTRYAG	1 cut(s)	549
BstV1I	GCAGC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	102
BtrI	CACGTC	1 cut(s)	424
BtsCI	GGATG	2 cut(s)	38, 622
BtsI	GCAGTG	1 cut(s)	546
BtsIMutI	CAGTG	2 cut(s)	166, 546
BveI	ACCTGC	1 cut(s)	469
Cac8I	GCNNGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	100
CsiI	ACCWGGT	1 cut(s)	444
Csp6I	GTAC	3 cut(s)	58, 346, 373
CviAII	CATG	2 cut(s)	230, 520
CviJI	RGCY	9 cut(s)	49, 102, 122, 166, 219, 234, 256, 360, 622
CviKI_1	RGCY	9 cut(s)	49, 102, 122, 166, 219, 234, 256, 360, 622
CviQI	GTAC	3 cut(s)	58, 346, 373
DpnI	GATC	1 cut(s)	114
DpnII	GATC	1 cut(s)	112
DraIII	CACNNNGTG	1 cut(s)	448
Eam1104I	CTCTTC	1 cut(s)	384
EarI	CTCTTC	1 cut(s)	384
EcoRII	CCWGG	3 cut(s)	271, 376, 444
FaeI	CATG	2 cut(s)	233, 523
FaiI	YATR	8 cut(s)	45, 93, 126, 183, 231, 494, 521, 525
FalI	AAGNNNNNCTT	4 cut(s)	554, 586, 576, 608
FaqI	GGGAC	2 cut(s)	410, 593
FatI	CATG	2 cut(s)	229, 519
Fnu4HI	GCNGC	1 cut(s)	552
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	552
FspBI	CTAG	1 cut(s)	350
GluI	GCNGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	255
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	2 cut(s)	233, 523
HincII	GTYRAC	1 cut(s)	433
HindII	GTYRAC	1 cut(s)	433
HpaI	GTTAAC	1 cut(s)	433
HphI	GGTGA	1 cut(s)	434
Hpy166II	GTNNAC	4 cut(s)	346, 433, 442, 503
Hpy8I	GTNNAC	4 cut(s)	346, 433, 442, 503
HpyAV	CCTTC	3 cut(s)	141, 180, 580
HpyCH4III	ACNGT	4 cut(s)	19, 138, 211, 343
HpyCH4IV	ACGT	1 cut(s)	423
HpyCH4V	TGCA	6 cut(s)	215, 229, 407, 451, 478, 551
HpySE526I	ACGT	1 cut(s)	423
Hsp92II	CATG	2 cut(s)	233, 523
KspAI	GTTAAC	1 cut(s)	433
Kzo9I	GATC	1 cut(s)	112
Lsp1109I	GCAGC	1 cut(s)	563
MabI	ACCWGGT	1 cut(s)	444
MaeI	CTAG	1 cut(s)	350
MaeII	ACGT	1 cut(s)	423
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	114
MboI	GATC	1 cut(s)	112
MboII	GAAGA	4 cut(s)	320, 388, 401, 596
MhlI	GDGCHC	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	6 cut(s)	185, 235, 241, 463, 552, 618
MseI	TTAA	2 cut(s)	432, 510
MslI	CAYNNNNRTG	1 cut(s)	303
MspR9I	CCNGG	3 cut(s)	273, 378, 446
Mva1269I	GAATGC	2 cut(s)	298, 593
MvaI	CCWGG	3 cut(s)	273, 378, 446
NdeII	GATC	1 cut(s)	112
NlaIII	CATG	2 cut(s)	233, 523
NlaIV	GGNNCC	1 cut(s)	603
NmuCI	GTSAC	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	469
PctI	GAATGC	2 cut(s)	298, 593
PkrI	GCNGC	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	271, 376, 444
PspGI	CCWGG	3 cut(s)	271, 376, 444
PspN4I	GGNNCC	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	100
PstI	CTGCAG	1 cut(s)	553
RsaI	GTAC	3 cut(s)	59, 347, 374
RsaNI	GTAC	3 cut(s)	58, 346, 373
RseI	CAYNNNNRTG	1 cut(s)	303
SaqAI	TTAA	2 cut(s)	432, 510
SatI	GCNGC	1 cut(s)	552
Sau3AI	GATC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	100
ScrFI	CCNGG	3 cut(s)	273, 378, 446
SduI	GDGCHC	1 cut(s)	468
SexAI	ACCWGGT	1 cut(s)	444
SfcI	CTRYAG	1 cut(s)	549
SmiMI	CAYNNNNRTG	1 cut(s)	303
SsiI	CCGC	1 cut(s)	170
SspMI	CTAG	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	271, 376, 444
TaaI	ACNGT	4 cut(s)	19, 138, 211, 343
TaiI	ACGT	1 cut(s)	426
Tru1I	TTAA	2 cut(s)	432, 510
Tru9I	TTAA	2 cut(s)	432, 510
TscAI	CASTG	2 cut(s)	166, 553
TseFI	GTSAC	1 cut(s)	69
TseI	GCWGC	1 cut(s)	551
Tsp45I	GTSAC	1 cut(s)	69
TspDTI	ATGAA	3 cut(s)	388, 508, 540
TspRI	CASTG	2 cut(s)	166, 553
XspI	CTAG	1 cut(s)	350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.