Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

41184312 .. 41186460

Gene Structure 2149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1292100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGCAGGGCCTTCTTCGCTTACTATCTTCTTCTTCAGCTTACTGTTCTTCTCTGCAGTATCTGAAGCTTCCAAATGCTCACTCAAACGATTACCTCTAGTAAGAAATATCAGTGAGCTTCCACAGAATAACTATGGAAGGGCAGGTTTGGCACACACAACTGTTGCTGGTTCACTCTTGCATGGGTTGAAAGAGGTTGAGGTTTGGCTACAAACATTTGCTCCAGGATCAGGCACACCAATACACAGGCATTCTTGTGAAGAAGTTTTCGTTGTCCTAAAGGGAAGTGGAACTCTCTACCTTGCACTGAGCTCACACGAGAAGTTCCCTGGAAAGCCCCAAGAGTTCTCTGTCTTTGCAAATAGCACTTTTCACATACCTGTTAACAATGCTCACCGGGTCCGGAATACAAATGAACACGAGGATTTGCAAGTGCTTGTCACCATATCCCGTCCGTCAGTTAAAGTGTTCATATATGAGGACTGGTTCATGCCGCACACTGCAGCAAAGTTAAAGTACCCCTACTATTGGGACGAAGAATGCCTCGAAGTTGAATCACCGCCAAAGGATGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

193

Amino Acids

21.59

Weight (kDa)

6.3

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	23 - 185	4.7e-93	Auxin binding protein
Cupin_2	PF07883	69 - 147	4.5e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	134
AccIII	TCCGGA	1 cut(s)	402
AciI	CCGC	2 cut(s)	494, 560
AclWI	GGATC	1 cut(s)	235
AcuI	CTGAAG	2 cut(s)	19, 84
AfaI	GTAC	1 cut(s)	518
AfiI	CCNNNNNNNGG	2 cut(s)	230, 528
AgsI	TTSAA	2 cut(s)	190, 554
AjnI	CCWGG	2 cut(s)	223, 328
AluBI	AGCT	5 cut(s)	39, 68, 118, 312, 574
AluI	AGCT	5 cut(s)	39, 68, 118, 312, 574
Alw21I	GWGCWC	1 cut(s)	314
AlwI	GGATC	1 cut(s)	235
AlwNI	CAGNNNCTG	1 cut(s)	62
Aor13HI	TCCGGA	1 cut(s)	402
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	8, 400
AsuC2I	CCSGG	1 cut(s)	398
AsuHPI	GGTGA	3 cut(s)	386, 433, 549
AvaII	GGWCC	1 cut(s)	400
BanII	GRGCYC	1 cut(s)	314
BauI	CACGAG	2 cut(s)	317, 419
Bbv12I	GWGCWC	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	515
BciT130I	CCWGG	2 cut(s)	225, 330
BcnI	CCSGG	1 cut(s)	398
BfaI	CTAG	1 cut(s)	98
BfmI	CTRYAG	2 cut(s)	54, 501
BfuAI	ACCTGC	1 cut(s)	134
BisI	GCNGC	2 cut(s)	494, 504
BlsI	GCNGC	2 cut(s)	495, 505
Bme1390I	CCNGG	3 cut(s)	225, 330, 398
Bme18I	GGWCC	1 cut(s)	400
BmgT120I	GGNCC	2 cut(s)	8, 400
BmiI	GGNNCC	1 cut(s)	401
BmrFI	CCNGG	3 cut(s)	225, 330, 398
BpmI	CTGGAG	1 cut(s)	207
BpuMI	CCSGG	1 cut(s)	398
BsaJI	CCNNGG	1 cut(s)	328
BsaWI	WCCGGW	1 cut(s)	402
BsaXI	ACNNNNNCTCC	2 cut(s)	205, 235
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 528
Bse1I	ACTGG	1 cut(s)	488
BseAI	TCCGGA	1 cut(s)	402
BseBI	CCWGG	2 cut(s)	225, 330
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	1 cut(s)	574
BseLI	CCNNNNNNNGG	2 cut(s)	230, 528
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	515
BshFI	GGCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	314
BsiSI	CCGG	2 cut(s)	397, 403
BslFI	GGGAC	1 cut(s)	545
BslI	CCNNNNNNNGG	2 cut(s)	230, 528
BsmFI	GGGAC	1 cut(s)	545
BsmI	GAATGC	2 cut(s)	250, 545
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	1 cut(s)	314
Bsp13I	TCCGGA	1 cut(s)	402
Bsp143I	GATC	1 cut(s)	227
BspACI	CCGC	2 cut(s)	494, 560
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	300
BspEI	TCCGGA	1 cut(s)	402
BspLI	GGNNCC	1 cut(s)	401
BspMAI	CTGCAG	2 cut(s)	58, 505
BspMI	ACCTGC	1 cut(s)	134
BspPI	GGATC	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	227
BssSI	CACGAG	2 cut(s)	317, 419
Bst2BI	CACGAG	2 cut(s)	317, 419
Bst2UI	CCWGG	2 cut(s)	225, 330
Bst4CI	ACNGT	2 cut(s)	45, 163
BstDEI	CTNAG	1 cut(s)	308
BstF5I	GGATG	1 cut(s)	574
BstKTI	GATC	1 cut(s)	230
BstMBI	GATC	1 cut(s)	227
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 149
BstNI	CCWGG	2 cut(s)	225, 330
BstSCI	CCNGG	3 cut(s)	223, 328, 396
BstSFI	CTRYAG	2 cut(s)	54, 501
BstV1I	GCAGC	1 cut(s)	515
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	574
BtsI	GCAGTG	1 cut(s)	498
BtsIMutI	CAGTG	3 cut(s)	118, 305, 498
BveI	ACCTGC	1 cut(s)	134
CaiI	CAGNNNCTG	1 cut(s)	62
Cfr13I	GGNCC	2 cut(s)	8, 400
Csp6I	GTAC	1 cut(s)	517
CviAII	CATG	2 cut(s)	182, 490
CviJI	RGCY	8 cut(s)	10, 39, 68, 118, 208, 312, 337, 574
CviKI_1	RGCY	8 cut(s)	10, 39, 68, 118, 208, 312, 337, 574
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	1 cut(s)	308
DpnI	GATC	1 cut(s)	229
DpnII	GATC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	312
Eco24I	GRGCYC	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	400
Eco53kI	GAGCTC	1 cut(s)	312
Eco57I	CTGAAG	2 cut(s)	19, 84
EcoICRI	GAGCTC	1 cut(s)	312
EcoO109I	RGGNCCY	1 cut(s)	8
EcoRII	CCWGG	2 cut(s)	223, 328
EcoT38I	GRGCYC	1 cut(s)	314
FaeI	CATG	2 cut(s)	185, 493
FaiI	YATR	9 cut(s)	135, 183, 377, 446, 473, 475, 477, 491, 577
FaqI	GGGAC	1 cut(s)	545
FatI	CATG	2 cut(s)	181, 489
Fnu4HI	GCNGC	2 cut(s)	494, 504
FriOI	GRGCYC	1 cut(s)	314
Fsp4HI	GCNGC	2 cut(s)	494, 504
FspBI	CTAG	1 cut(s)	98
GluI	GCNGC	2 cut(s)	494, 504
GsuI	CTGGAG	1 cut(s)	207
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	397, 403
Hin1II	CATG	2 cut(s)	185, 493
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HindIII	AAGCTT	1 cut(s)	66
HinfI	GANTC	1 cut(s)	554
HpaI	GTTAAC	1 cut(s)	385
HpaII	CCGG	2 cut(s)	397, 403
HphI	GGTGA	3 cut(s)	386, 433, 549
Hpy166II	GTNNAC	2 cut(s)	173, 385
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	403
Hpy8I	GTNNAC	2 cut(s)	173, 385
HpyAV	CCTTC	2 cut(s)	21, 132
HpyCH4III	ACNGT	2 cut(s)	45, 163
HpyCH4V	TGCA	6 cut(s)	56, 181, 305, 359, 430, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 149
HpyF3I	CTNAG	1 cut(s)	308
Hsp92II	CATG	2 cut(s)	185, 493
Kpn2I	TCCGGA	1 cut(s)	402
KspAI	GTTAAC	1 cut(s)	385
Kzo9I	GATC	1 cut(s)	227
LmnI	GCTCC	1 cut(s)	226
Lsp1109I	GCAGC	1 cut(s)	515
MaeI	CTAG	1 cut(s)	98
MaeIII	GTNAC	1 cut(s)	439
MalI	GATC	1 cut(s)	229
MboI	GATC	1 cut(s)	227
MboII	GAAGA	7 cut(s)	6, 19, 22, 25, 40, 272, 548
MhlI	GDGCHC	1 cut(s)	314
MnlI	CCTC	6 cut(s)	105, 187, 193, 415, 472, 554
MroI	TCCGGA	1 cut(s)	402
MseI	TTAA	3 cut(s)	384, 462, 512
MslI	CAYNNNNRTG	1 cut(s)	255
MspI	CCGG	2 cut(s)	397, 403
MspR9I	CCNGG	3 cut(s)	225, 330, 398
Mva1269I	GAATGC	2 cut(s)	250, 545
MvaI	CCWGG	2 cut(s)	225, 330
MwoI	GCNNNNNNNGC	2 cut(s)	16, 149
NciI	CCSGG	1 cut(s)	398
NdeII	GATC	1 cut(s)	227
NlaIII	CATG	2 cut(s)	185, 493
NlaIV	GGNNCC	1 cut(s)	401
NmuCI	GTSAC	1 cut(s)	439
PctI	GAATGC	2 cut(s)	250, 545
PfeI	GAWTC	1 cut(s)	554
PfoI	TCCNGGA	1 cut(s)	223
PkrI	GCNGC	2 cut(s)	495, 505
Psp124BI	GAGCTC	1 cut(s)	314
Psp6I	CCWGG	2 cut(s)	223, 328
PspGI	CCWGG	2 cut(s)	223, 328
PspN4I	GGNNCC	1 cut(s)	401
PspPI	GGNCC	2 cut(s)	8, 400
PstI	CTGCAG	2 cut(s)	58, 505
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
RseI	CAYNNNNRTG	1 cut(s)	255
SacI	GAGCTC	1 cut(s)	314
SaqAI	TTAA	3 cut(s)	384, 462, 512
SatI	GCNGC	2 cut(s)	494, 504
Sau3AI	GATC	1 cut(s)	227
Sau96I	GGNCC	2 cut(s)	8, 400
ScrFI	CCNGG	3 cut(s)	225, 330, 398
SduI	GDGCHC	1 cut(s)	314
SfcI	CTRYAG	2 cut(s)	54, 501
SinI	GGWCC	1 cut(s)	400
SmiMI	CAYNNNNRTG	1 cut(s)	255
SsiI	CCGC	2 cut(s)	494, 560
SspMI	CTAG	1 cut(s)	98
SstI	GAGCTC	1 cut(s)	314
StyD4I	CCNGG	3 cut(s)	223, 328, 396
TaaI	ACNGT	2 cut(s)	45, 163
TaqI	TCGA	1 cut(s)	546
TauI	GCSGC	1 cut(s)	496
TfiI	GAWTC	1 cut(s)	554
Tru1I	TTAA	3 cut(s)	384, 462, 512
Tru9I	TTAA	3 cut(s)	384, 462, 512
TscAI	CASTG	3 cut(s)	118, 312, 505
TseFI	GTSAC	1 cut(s)	439
TseI	GCWGC	1 cut(s)	503
Tsp45I	GTSAC	1 cut(s)	439
TspDTI	ATGAA	3 cut(s)	429, 460, 478
TspGWI	ACGGA	1 cut(s)	444
TspRI	CASTG	3 cut(s)	118, 312, 505
VpaK11BI	GGWCC	1 cut(s)	400
XspI	CTAG	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.