Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8386397.1

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Forward (+)

88 .. 1086

Gene Structure 999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8386397.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

atggctgggaggatcttcctcttcttcttcttgagcttgctgtccttctctgcaatatctgaagcttccaaatgctcggttcgagagtttcctgtggtaaggaatatcagtgagcttccgcagaataactatggaaggggaggtttggcacacactactgttgcaggctcactcttgcttggcttgaaagaggttgaggtttggctacaaacattttctccagggtcaggcacaccgatacacaggcattcttgtgaagaagtgtttgttgtcctaaggggtagtggaactatgtacctagcaccaagctcacacgagaagtaccctggaaagccagaagagttcttcatctttgcaaatagcacatttcacatccctgttaacgatgttcaccaggtaatctgtgtgttcatgccaatgaaatccatgacgttgattcagttgatgtaccttttttctcatttataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

155

Amino Acids

17.35

Weight (kDa)

7.05

Isoelectric Point (pI)

47.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	466
AciI	CCGC	1 cut(s)	119
AclWI	GGATC	1 cut(s)	20
AcuI	CTGAAG	1 cut(s)	81
AfaI	GTAC	3 cut(s)	296, 323, 449
AfiI	CCNNNNNNNGG	1 cut(s)	227
AgsI	TTSAA	1 cut(s)	187
AjnI	CCWGG	3 cut(s)	220, 325, 393
AluBI	AGCT	4 cut(s)	36, 65, 115, 309
AluI	AGCT	4 cut(s)	36, 65, 115, 309
AlwI	GGATC	1 cut(s)	20
AsuHPI	GGTGA	1 cut(s)	383
AxyI	CCTNAGG	1 cut(s)	275
BauI	CACGAG	1 cut(s)	314
BciT130I	CCWGG	3 cut(s)	222, 327, 395
BfaI	CTAG	1 cut(s)	299
Bme1390I	CCNGG	3 cut(s)	222, 327, 395
BmrFI	CCNGG	3 cut(s)	222, 327, 395
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	52
BsaJI	CCNNGG	2 cut(s)	221, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	1 cut(s)	227
Bse21I	CCTNAGG	1 cut(s)	275
BseBI	CCWGG	3 cut(s)	222, 327, 395
BseDI	CCNNGG	2 cut(s)	221, 325
BseGI	GGATG	1 cut(s)	372
BseLI	CCNNNNNNNGG	1 cut(s)	227
BseYI	CCCAGC	1 cut(s)	5
BslI	CCNNNNNNNGG	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	247
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	1 cut(s)	119
BspPI	GGATC	1 cut(s)	20
BssECI	CCNNGG	2 cut(s)	221, 325
BssMI	GATC	1 cut(s)	12
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	3 cut(s)	222, 327, 395
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	26, 333
BstC8I	GCNNGC	2 cut(s)	38, 166
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	372
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstNI	CCWGG	3 cut(s)	222, 327, 395
BstSCI	CCNGG	3 cut(s)	220, 325, 393
BstX2I	RGATCY	1 cut(s)	12
BstYI	RGATCY	1 cut(s)	12
Bsu36I	CCTNAGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	2 cut(s)	38, 166
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	3 cut(s)	295, 322, 448
CviAII	CATG	2 cut(s)	412, 427
CviJI	RGCY	9 cut(s)	5, 36, 65, 115, 168, 183, 205, 309, 334
CviKI_1	RGCY	9 cut(s)	5, 36, 65, 115, 168, 183, 205, 309, 334
CviQI	GTAC	3 cut(s)	295, 322, 448
DdeI	CTNAG	1 cut(s)	275
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	2 cut(s)	26, 333
EarI	CTCTTC	2 cut(s)	26, 333
Eco57I	CTGAAG	1 cut(s)	81
Eco81I	CCTNAGG	1 cut(s)	275
EcoRII	CCWGG	3 cut(s)	220, 325, 393
FaeI	CATG	2 cut(s)	415, 430
FaiI	YATR	5 cut(s)	132, 293, 413, 428, 466
FatI	CATG	2 cut(s)	411, 426
FokI	GGATG	1 cut(s)	359
FspBI	CTAG	1 cut(s)	299
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	204
Hin1II	CATG	2 cut(s)	415, 430
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	63
HinfI	GANTC	1 cut(s)	436
HpaI	GTTAAC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	382, 391
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	31, 83
Hpy8I	GTNNAC	2 cut(s)	382, 391
HpyAV	CCTTC	2 cut(s)	55, 129
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	431
HpyCH4V	TGCA	3 cut(s)	53, 164, 356
HpyF3I	CTNAG	1 cut(s)	275
HpySE526I	ACGT	1 cut(s)	431
Hsp92II	CATG	2 cut(s)	415, 430
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	12
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	431
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	7 cut(s)	7, 13, 16, 19, 269, 337, 350
MflI	RGATCY	1 cut(s)	12
MnlI	CCTC	5 cut(s)	3, 29, 134, 184, 190
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	2 cut(s)	252, 416
MspR9I	CCNGG	3 cut(s)	222, 327, 395
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	3 cut(s)	222, 327, 395
NdeII	GATC	1 cut(s)	12
NlaIII	CATG	2 cut(s)	415, 430
PctI	GAATGC	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	436
PsiI	TTATAA	1 cut(s)	466
Psp6I	CCWGG	3 cut(s)	220, 325, 393
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	3 cut(s)	220, 325, 393
PsuI	RGATCY	1 cut(s)	12
RsaI	GTAC	3 cut(s)	296, 323, 449
RsaNI	GTAC	3 cut(s)	295, 322, 448
RseI	CAYNNNNRTG	2 cut(s)	252, 416
SaqAI	TTAA	1 cut(s)	381
Sau3AI	GATC	1 cut(s)	12
ScrFI	CCNGG	3 cut(s)	222, 327, 395
SexAI	ACCWGGT	1 cut(s)	393
SmiMI	CAYNNNNRTG	2 cut(s)	252, 416
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SsiI	CCGC	1 cut(s)	119
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	220, 325, 393
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	434
TaqI	TCGA	1 cut(s)	82
TfiI	GAWTC	1 cut(s)	436
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TscAI	CASTG	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	337, 400, 434
TspRI	CASTG	1 cut(s)	115
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.