Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

21423737 .. 21425834

Gene Structure 2098 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G247700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCAGGGCCTTCTCTCACTATCTTCTTCTTGAGCTTGCTATTCTTCTGTGCGATATCTGAAGCTTCCAAGTGCTCAGTCAAAGGGTTACCTGAAGTAAGAAATATCAGTGCCCTTCCACAGAGTAACTATGGAAGGGGAGGTTTGGTACACACAACTGTTGCTGGTTCACTCTTGCATGGGTTGAAAGAGGTTGAGGTTTGGCTGCAAACATTTTCTCCAGGATCAGGCACACCAATACACAGGCATTCTTGTGAAGAAGTTTTTGTTGTCCTAAAGGGGAGTGGAACTCTCTACCTTGCACCAAACTCACACGAGAAGTCCCCTGGAAAACCACAAGAATTCTCTATCTTTGCAAATAGCACATTTCACGTACCTGTTAACGATGCTCACCAGGTCCGGAATACAAATGAGCATGAGGATCTGCAAGTGCTTGTTGTCATATCTCGTCCCCCAGTTAAAGTGTTCACATATGAGAACTGGTTCGTGCCTCACGCTGCAGCAAAATTAAAGTTCCCCTACTACTGGGATGAAGAGTGCCTTGAAGTCGAACCGCCGCCAAAGGACGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

192

Amino Acids

21.2

Weight (kDa)

5.97

Isoelectric Point (pI)

47.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	399
AciI	CCGC	2 cut(s)	554, 557
AclWI	GGATC	2 cut(s)	232, 429
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	2 cut(s)	81, 114
AfaI	GTAC	2 cut(s)	150, 375
AfiI	CCNNNNNNNGG	2 cut(s)	227, 525
AgsI	TTSAA	2 cut(s)	187, 545
AjnI	CCWGG	3 cut(s)	220, 325, 393
AluBI	AGCT	3 cut(s)	36, 65, 571
AluI	AGCT	3 cut(s)	36, 65, 571
Alw21I	GWGCWC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	232, 429
Aor13HI	TCCGGA	1 cut(s)	399
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	3 cut(s)	205, 497, 500
ApoI	RAATTY	1 cut(s)	341
Asp700I	GAANNNNTTC	1 cut(s)	482
AspS9I	GGNCC	2 cut(s)	8, 397
AsuHPI	GGTGA	1 cut(s)	383
AvaII	GGWCC	1 cut(s)	397
BaeGI	GKGCMC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	314
Bbv12I	GWGCWC	1 cut(s)	77
BbvI	GCAGC	3 cut(s)	192, 484, 512
BciT130I	CCWGG	3 cut(s)	222, 327, 395
BfmI	CTRYAG	1 cut(s)	498
BisI	GCNGC	4 cut(s)	206, 498, 501, 557
BlsI	GCNGC	4 cut(s)	207, 499, 502, 558
Bme1390I	CCNGG	3 cut(s)	222, 327, 395
Bme18I	GGWCC	1 cut(s)	397
BmgT120I	GGNCC	2 cut(s)	8, 397
BmrFI	CCNGG	3 cut(s)	222, 327, 395
BmrI	ACTGGG	2 cut(s)	449, 535
BmsI	GCATC	1 cut(s)	376
BmuI	ACTGGG	2 cut(s)	449, 535
BplI	GAGNNNNNCTC	2 cut(s)	274, 306
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	52
BsaAI	YACGTR	1 cut(s)	373
BsaJI	CCNNGG	1 cut(s)	325
BsaWI	WCCGGW	1 cut(s)	399
BsaXI	ACNNNNNCTCC	4 cut(s)	132, 162, 202, 232
Bsc4I	CCNNNNNNNGG	2 cut(s)	227, 525
Bse1I	ACTGG	3 cut(s)	455, 485, 530
BseAI	TCCGGA	1 cut(s)	399
BseBI	CCWGG	3 cut(s)	222, 327, 395
BseDI	CCNNGG	1 cut(s)	325
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	2 cut(s)	227, 525
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	3 cut(s)	455, 485, 530
BseSI	GKGCMC	1 cut(s)	115
BseXI	GCAGC	3 cut(s)	192, 484, 512
BshFI	GGCC	1 cut(s)	10
BsiHKAI	GWGCWC	1 cut(s)	77
BsiSI	CCGG	1 cut(s)	400
BslFI	GGGAC	2 cut(s)	307, 435
BslI	CCNNNNNNNGG	2 cut(s)	227, 525
BsmFI	GGGAC	2 cut(s)	307, 435
BsmI	GAATGC	1 cut(s)	247
BsnI	GGCC	1 cut(s)	10
Bsp1286I	GDGCHC	2 cut(s)	77, 115
Bsp13I	TCCGGA	1 cut(s)	399
Bsp143I	GATC	2 cut(s)	224, 421
BspACI	CCGC	2 cut(s)	554, 557
BspANI	GGCC	1 cut(s)	10
BspCNI	CTCAG	1 cut(s)	89
BspEI	TCCGGA	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	502
BspPI	GGATC	2 cut(s)	232, 429
BsrI	ACTGG	3 cut(s)	455, 485, 530
BssECI	CCNNGG	1 cut(s)	325
BssMI	GATC	2 cut(s)	224, 421
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	3 cut(s)	222, 327, 395
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	1 cut(s)	528
BstBAI	YACGTR	1 cut(s)	373
BstC8I	GCNNGC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	76
BstEII	GGTNACC	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	535
BstKTI	GATC	2 cut(s)	227, 424
BstMBI	GATC	2 cut(s)	224, 421
BstNI	CCWGG	3 cut(s)	222, 327, 395
BstPI	GGTNACC	1 cut(s)	87
BstSCI	CCNGG	3 cut(s)	220, 325, 393
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	115
BstV1I	GCAGC	3 cut(s)	192, 484, 512
BstX2I	RGATCY	1 cut(s)	421
BstYI	RGATCY	1 cut(s)	421
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	38
Cfr13I	GGNCC	2 cut(s)	8, 397
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	149, 374
CviAII	CATG	2 cut(s)	179, 416
CviJI	RGCY	5 cut(s)	10, 36, 65, 205, 571
CviKI_1	RGCY	5 cut(s)	10, 36, 65, 205, 571
CviQI	GTAC	2 cut(s)	149, 374
DdeI	CTNAG	1 cut(s)	76
DpnI	GATC	2 cut(s)	226, 423
DpnII	GATC	2 cut(s)	224, 421
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco32I	GATATC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	397
Eco57I	CTGAAG	2 cut(s)	81, 114
Eco91I	GGTNACC	1 cut(s)	87
EcoO109I	RGGNCCY	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	87
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	3 cut(s)	220, 325, 393
EcoRV	GATATC	1 cut(s)	57
FaeI	CATG	2 cut(s)	182, 419
FaiI	YATR	7 cut(s)	132, 180, 417, 443, 472, 474, 574
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	2 cut(s)	307, 435
FatI	CATG	2 cut(s)	178, 415
FauNDI	CATATG	1 cut(s)	472
Fnu4HI	GCNGC	4 cut(s)	206, 498, 501, 557
FokI	GGATG	1 cut(s)	542
Fsp4HI	GCNGC	4 cut(s)	206, 498, 501, 557
GluI	GCNGC	4 cut(s)	206, 498, 501, 557
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	1 cut(s)	400
Hin1II	CATG	2 cut(s)	182, 419
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	63
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	400
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	4 cut(s)	151, 170, 382, 468
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	31, 400
Hpy8I	GTNNAC	4 cut(s)	151, 170, 382, 468
HpyAV	CCTTC	3 cut(s)	21, 125, 129
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	372
HpyCH4V	TGCA	6 cut(s)	178, 208, 302, 356, 427, 500
HpyF3I	CTNAG	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	372
Hsp92II	CATG	2 cut(s)	182, 419
Kpn2I	TCCGGA	1 cut(s)	399
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	2 cut(s)	224, 421
Lsp1109I	GCAGC	3 cut(s)	192, 484, 512
LweI	GCATC	1 cut(s)	376
MabI	ACCWGGT	1 cut(s)	393
MaeII	ACGT	1 cut(s)	372
MaeIII	GTNAC	2 cut(s)	87, 125
MalI	GATC	2 cut(s)	226, 423
MboI	GATC	2 cut(s)	224, 421
MboII	GAAGA	5 cut(s)	16, 19, 37, 269, 545
MflI	RGATCY	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	77, 115
MluCI	AATT	2 cut(s)	341, 506
MnlI	CCTC	5 cut(s)	134, 184, 190, 412, 501
MroI	TCCGGA	1 cut(s)	399
MroXI	GAANNNNTTC	1 cut(s)	482
MseI	TTAA	3 cut(s)	381, 459, 509
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	3 cut(s)	222, 327, 395
Mva1269I	GAATGC	1 cut(s)	247
MvaI	CCWGG	3 cut(s)	222, 327, 395
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	2 cut(s)	224, 421
NlaIII	CATG	2 cut(s)	182, 419
PctI	GAATGC	1 cut(s)	247
PdmI	GAANNNNTTC	1 cut(s)	482
PfoI	TCCNGGA	1 cut(s)	220
PkrI	GCNGC	4 cut(s)	207, 499, 502, 558
Ppu21I	YACGTR	1 cut(s)	373
Psp6I	CCWGG	3 cut(s)	220, 325, 393
PspEI	GGTNACC	1 cut(s)	87
PspGI	CCWGG	3 cut(s)	220, 325, 393
PspPI	GGNCC	2 cut(s)	8, 397
PstI	CTGCAG	1 cut(s)	502
PsuI	RGATCY	1 cut(s)	421
RsaI	GTAC	2 cut(s)	150, 375
RsaNI	GTAC	2 cut(s)	149, 374
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	381, 459, 509
SatI	GCNGC	4 cut(s)	206, 498, 501, 557
Sau3AI	GATC	2 cut(s)	224, 421
Sau96I	GGNCC	2 cut(s)	8, 397
ScrFI	CCNGG	3 cut(s)	222, 327, 395
SduI	GDGCHC	2 cut(s)	77, 115
SexAI	ACCWGGT	1 cut(s)	393
SfaNI	GCATC	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	498
SinI	GGWCC	1 cut(s)	397
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
Sse9I	AATT	2 cut(s)	341, 506
SsiI	CCGC	2 cut(s)	554, 557
StyD4I	CCNGG	3 cut(s)	220, 325, 393
TaaI	ACNGT	1 cut(s)	160
TaiI	ACGT	1 cut(s)	375
TaqI	TCGA	1 cut(s)	549
TasI	AATT	2 cut(s)	341, 506
TauI	GCSGC	1 cut(s)	559
Tru1I	TTAA	3 cut(s)	381, 459, 509
Tru9I	TTAA	3 cut(s)	381, 459, 509
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	3 cut(s)	205, 497, 500
TspDTI	ATGAA	1 cut(s)	546
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	397
XapI	RAATTY	1 cut(s)	341
XmnI	GAANNNNTTC	1 cut(s)	482

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.