Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

35478263 .. 35480790

Gene Structure 2528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1271500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGTAGGGCCTTCTTCTCTTACTATCTTTTTCTTCTTCAGCTTGCTGTTCTTCTCTGCAACATCTGAAGCTTCCAAATGCTCACTCAAAGGGTTACCTATGGTAAGAAATATCAGTGAGCTTCCACAGGATAACTATGGAAGGGGTGGTTTGGCACACACAACTGTTGCTGGTTCGCTCTTGCATGGGTTGAAAGAGGTCGAGGTTTGGCTACAAACATTTGCTCCAGGATCAGGCACACCAATACACAGGCATTCTTGTGAAGAAGTTTTTGTTGTCCTAAAGGGAAGTGGAACTCTCTACCTTGCACCGAGCTTGCACGGGAAGTTCCCTGGAAAGCCACAGGAGTTCTCTATCTTTGCAAATAGCACATTTCACATACCTGTTAACGATGTTCACCAGGTCCGGAATACAAATGAACATGACGATTTGCAAGCACTTGTCACCGTCTCTCGTCCGCCGGTTAAAGTGTTCATGTATCAGGACTGGTTCATGCCACACACTGCAGCAAAGTTAAGGTACCCCTACTATTGGGATGAAGAATGCCTCGATGTCGAACCACCACCAAAGGATGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

194

Amino Acids

21.63

Weight (kDa)

5.96

Isoelectric Point (pI)

47.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	24 - 185	6.6e-93	Auxin binding protein
Cupin_2	PF07883	70 - 148	2.7e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	519
AccB1I	GGYRCC	1 cut(s)	519
AccIII	TCCGGA	1 cut(s)	405
AciI	CCGC	1 cut(s)	458
AclWI	GGATC	1 cut(s)	238
AcuI	CTGAAG	2 cut(s)	22, 87
AfaI	GTAC	1 cut(s)	521
AfiI	CCNNNNNNNGG	2 cut(s)	233, 531
AgsI	TTSAA	1 cut(s)	193
AjnI	CCWGG	3 cut(s)	226, 331, 399
AluBI	AGCT	5 cut(s)	42, 71, 121, 315, 577
AluI	AGCT	5 cut(s)	42, 71, 121, 315, 577
Alw26I	GTCTC	1 cut(s)	454
AlwI	GGATC	1 cut(s)	238
Aor13HI	TCCGGA	1 cut(s)	405
AoxI	GGCC	1 cut(s)	8
ApeKI	GCWGC	1 cut(s)	506
Asp718I	GGTACC	1 cut(s)	519
AspS9I	GGNCC	2 cut(s)	8, 403
AsuHPI	GGTGA	2 cut(s)	389, 436
AvaII	GGWCC	1 cut(s)	403
BanI	GGYRCC	1 cut(s)	519
BbvI	GCAGC	1 cut(s)	518
BciT130I	CCWGG	3 cut(s)	228, 333, 401
BcoDI	GTCTC	1 cut(s)	454
BfmI	CTRYAG	1 cut(s)	504
BisI	GCNGC	1 cut(s)	507
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	228, 333, 401
Bme18I	GGWCC	1 cut(s)	403
BmgT120I	GGNCC	2 cut(s)	8, 403
BmiI	GGNNCC	1 cut(s)	521
BmrFI	CCNGG	3 cut(s)	228, 333, 401
BpmI	CTGGAG	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	331
BsaWI	WCCGGW	1 cut(s)	405
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 531
Bse118I	RCCGGY	1 cut(s)	460
Bse1I	ACTGG	1 cut(s)	491
BseAI	TCCGGA	1 cut(s)	405
BseBI	CCWGG	3 cut(s)	228, 333, 401
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	541, 577
BseLI	CCNNNNNNNGG	2 cut(s)	233, 531
BseNI	ACTGG	1 cut(s)	491
BseXI	GCAGC	1 cut(s)	518
BshFI	GGCC	1 cut(s)	10
BshNI	GGYRCC	1 cut(s)	519
BsiSI	CCGG	2 cut(s)	406, 461
BslI	CCNNNNNNNGG	2 cut(s)	233, 531
BsmAI	GTCTC	1 cut(s)	454
BsmBI	CGTCTC	1 cut(s)	454
BsmI	GAATGC	2 cut(s)	253, 548
BsnI	GGCC	1 cut(s)	10
Bsp13I	TCCGGA	1 cut(s)	405
Bsp143I	GATC	1 cut(s)	230
BspACI	CCGC	1 cut(s)	458
BspANI	GGCC	1 cut(s)	10
BspEI	TCCGGA	1 cut(s)	405
BspLI	GGNNCC	1 cut(s)	521
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	238
BspT107I	GGYRCC	1 cut(s)	519
BsrFI	RCCGGY	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	491
BssAI	RCCGGY	1 cut(s)	460
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	1 cut(s)	230
Bst2UI	CCWGG	3 cut(s)	228, 333, 401
Bst4CI	ACNGT	2 cut(s)	166, 448
BstC8I	GCNNGC	3 cut(s)	44, 317, 435
BstEII	GGTNACC	1 cut(s)	93
BstF5I	GGATG	2 cut(s)	541, 577
BstKTI	GATC	1 cut(s)	233
BstMAI	GTCTC	1 cut(s)	454
BstMBI	GATC	1 cut(s)	230
BstNI	CCWGG	3 cut(s)	228, 333, 401
BstPI	GGTNACC	1 cut(s)	93
BstSCI	CCNGG	3 cut(s)	226, 331, 399
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	518
BsuRI	GGCC	1 cut(s)	10
BtsCI	GGATG	2 cut(s)	541, 577
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	121, 501
Cac8I	GCNNGC	3 cut(s)	44, 317, 435
Cfr10I	RCCGGY	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	8, 403
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	1 cut(s)	520
CviAII	CATG	4 cut(s)	185, 422, 475, 493
CviJI	RGCY	8 cut(s)	10, 42, 71, 121, 211, 315, 340, 577
CviKI_1	RGCY	8 cut(s)	10, 42, 71, 121, 211, 315, 340, 577
CviQI	GTAC	1 cut(s)	520
DpnI	GATC	1 cut(s)	232
DpnII	GATC	1 cut(s)	230
EciI	GGCGGA	1 cut(s)	447
Eco47I	GGWCC	1 cut(s)	403
Eco57I	CTGAAG	2 cut(s)	22, 87
Eco91I	GGTNACC	1 cut(s)	93
EcoO109I	RGGNCCY	1 cut(s)	8
EcoO65I	GGTNACC	1 cut(s)	93
EcoRII	CCWGG	3 cut(s)	226, 331, 399
Esp3I	CGTCTC	1 cut(s)	454
FaeI	CATG	4 cut(s)	188, 425, 478, 496
FaiI	YATR	8 cut(s)	101, 138, 186, 380, 423, 476, 494, 580
FatI	CATG	4 cut(s)	184, 421, 474, 492
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	1 cut(s)	507
GluI	GCNGC	1 cut(s)	507
GsuI	CTGGAG	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	10
HapII	CCGG	2 cut(s)	406, 461
Hin1II	CATG	4 cut(s)	188, 425, 478, 496
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	69
HpaI	GTTAAC	1 cut(s)	388
HpaII	CCGG	2 cut(s)	406, 461
HphI	GGTGA	2 cut(s)	389, 436
Hpy166II	GTNNAC	2 cut(s)	388, 397
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	406, 482
Hpy8I	GTNNAC	2 cut(s)	388, 397
HpyAV	CCTTC	2 cut(s)	21, 135
HpyCH4III	ACNGT	2 cut(s)	166, 448
HpyCH4V	TGCA	7 cut(s)	59, 184, 308, 319, 362, 433, 506
Hsp92II	CATG	4 cut(s)	188, 425, 478, 496
Kpn2I	TCCGGA	1 cut(s)	405
KpnI	GGTACC	1 cut(s)	523
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	1 cut(s)	230
LmnI	GCTCC	1 cut(s)	229
Lsp1109I	GCAGC	1 cut(s)	518
MabI	ACCWGGT	1 cut(s)	399
MaeIII	GTNAC	2 cut(s)	93, 442
MalI	GATC	1 cut(s)	232
MboI	GATC	1 cut(s)	230
MboII	GAAGA	6 cut(s)	6, 25, 28, 43, 275, 551
MnlI	CCTC	3 cut(s)	190, 196, 557
MroI	TCCGGA	1 cut(s)	405
MseI	TTAA	3 cut(s)	387, 465, 515
MslI	CAYNNNNRTG	1 cut(s)	258
MspI	CCGG	2 cut(s)	406, 461
MspR9I	CCNGG	3 cut(s)	228, 333, 401
Mva1269I	GAATGC	2 cut(s)	253, 548
MvaI	CCWGG	3 cut(s)	228, 333, 401
NdeII	GATC	1 cut(s)	230
NlaIII	CATG	4 cut(s)	188, 425, 478, 496
NlaIV	GGNNCC	1 cut(s)	521
NmuCI	GTSAC	1 cut(s)	442
PctI	GAATGC	2 cut(s)	253, 548
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	508
Psp6I	CCWGG	3 cut(s)	226, 331, 399
PspEI	GGTNACC	1 cut(s)	93
PspGI	CCWGG	3 cut(s)	226, 331, 399
PspN4I	GGNNCC	1 cut(s)	521
PspPI	GGNCC	2 cut(s)	8, 403
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	1 cut(s)	521
RsaNI	GTAC	1 cut(s)	520
RseI	CAYNNNNRTG	1 cut(s)	258
SaqAI	TTAA	3 cut(s)	387, 465, 515
SatI	GCNGC	1 cut(s)	507
Sau3AI	GATC	1 cut(s)	230
Sau96I	GGNCC	2 cut(s)	8, 403
ScrFI	CCNGG	3 cut(s)	228, 333, 401
SexAI	ACCWGGT	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	504
SinI	GGWCC	1 cut(s)	403
SmiMI	CAYNNNNRTG	1 cut(s)	258
SsiI	CCGC	1 cut(s)	458
StyD4I	CCNGG	3 cut(s)	226, 331, 399
TaaI	ACNGT	2 cut(s)	166, 448
TaqI	TCGA	3 cut(s)	201, 549, 555
Tru1I	TTAA	3 cut(s)	387, 465, 515
Tru9I	TTAA	3 cut(s)	387, 465, 515
TscAI	CASTG	2 cut(s)	121, 508
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	1 cut(s)	506
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	4 cut(s)	432, 463, 481, 552
TspRI	CASTG	2 cut(s)	121, 508
VpaK11BI	GGWCC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.