Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

53968205 .. 53969485

Gene Structure 1281 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG349400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGTTTTAATGCGCATTTGGTACACGATTGATGAAATTTCCGGTGAGTTTCCTGTGGTAAGGAATATCAGTGAGCTTCCGCAGAATAACTATGGAAGGGGAGGTTTGGCACACACTACTGTTGCAGGCTCACTCTTGCTCGGCTTGAAAGAGGTTGAGGTTTGGCTACAAACATTTTCTCCAGGGTCAGGCACACCGATACACAGGCATTCTTGTGAAGAAGTGTTTGTTGTCCTAAGGGGTAGTGGAACTATGTACCTAGCACCAAGCTCACATGAGAAGTACCCTGGAAAGCCAGAAGAGTTCTTCATCTTTGCAAATAGCACATTTCACATCCCTGTTAACGATGTTCACCAGGTGCGAAATACAAATGAGCATGAGGATTTGCAGGTGCTTGTTGTCATATCTCGTCCGCCCATTAAAGTGTTCATATATGAAAACTGGTCAATGCCTCACACTGCAGCGAAACTAAAGTTTCCCTACGATTGGGACGAAGAATGCCTTGAACTGGAACCACCTCCAAAGGATGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

178

Amino Acids

20.32

Weight (kDa)

5.2

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	16 - 170	6.4e-90	Auxin binding protein
Cupin_2	PF07883	55 - 134	5.4e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	379
Acc16I	TGCGCA	1 cut(s)	14
Acc36I	ACCTGC	1 cut(s)	379
AciI	CCGC	2 cut(s)	80, 413
AcsI	RAATTY	1 cut(s)	36
AdeI	CACNNNGTG	1 cut(s)	358
AfaI	GTAC	3 cut(s)	23, 257, 284
AfiI	CCNNNNNNNGG	3 cut(s)	188, 486, 508
AgsI	TTSAA	2 cut(s)	148, 506
AjnI	CCWGG	3 cut(s)	181, 286, 354
AluBI	AGCT	3 cut(s)	76, 270, 532
AluI	AGCT	3 cut(s)	76, 270, 532
ApeKI	GCWGC	1 cut(s)	461
ApoI	RAATTY	1 cut(s)	36
AspLEI	GCGC	1 cut(s)	15
AsuHPI	GGTGA	2 cut(s)	56, 344
AxyI	CCTNAGG	1 cut(s)	236
BbvI	GCAGC	1 cut(s)	473
BciT130I	CCWGG	3 cut(s)	183, 288, 356
BfaI	CTAG	1 cut(s)	260
BfmI	CTRYAG	1 cut(s)	459
BfuAI	ACCTGC	1 cut(s)	379
BisI	GCNGC	1 cut(s)	462
BlsI	GCNGC	1 cut(s)	463
Bme1390I	CCNGG	3 cut(s)	183, 288, 356
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	3 cut(s)	183, 288, 356
BpmI	CTGGAG	1 cut(s)	165
BsaJI	CCNNGG	2 cut(s)	182, 286
BsaWI	WCCGGW	1 cut(s)	41
BsaXI	ACNNNNNCTCC	2 cut(s)	163, 193
Bsc4I	CCNNNNNNNGG	3 cut(s)	188, 486, 508
Bse1I	ACTGG	2 cut(s)	446, 513
Bse21I	CCTNAGG	1 cut(s)	236
BseBI	CCWGG	3 cut(s)	183, 288, 356
BseDI	CCNNGG	2 cut(s)	182, 286
BseGI	GGATG	2 cut(s)	333, 532
BseLI	CCNNNNNNNGG	3 cut(s)	188, 486, 508
BseNI	ACTGG	2 cut(s)	446, 513
BseXI	GCAGC	1 cut(s)	473
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	503
BslI	CCNNNNNNNGG	3 cut(s)	188, 486, 508
BsmFI	GGGAC	1 cut(s)	503
BsmI	GAATGC	2 cut(s)	208, 503
BspACI	CCGC	2 cut(s)	80, 413
BspLI	GGNNCC	1 cut(s)	513
BspMAI	CTGCAG	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	379
BsrI	ACTGG	2 cut(s)	446, 513
BssECI	CCNNGG	2 cut(s)	182, 286
Bst2UI	CCWGG	3 cut(s)	183, 288, 356
Bst4CI	ACNGT	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	333, 532
BstHHI	GCGC	1 cut(s)	15
BstNI	CCWGG	3 cut(s)	183, 288, 356
BstSCI	CCNGG	3 cut(s)	181, 286, 354
BstSFI	CTRYAG	1 cut(s)	459
BstV1I	GCAGC	1 cut(s)	473
Bsu36I	CCTNAGG	1 cut(s)	236
BtsCI	GGATG	2 cut(s)	333, 532
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	76, 456
BveI	ACCTGC	1 cut(s)	379
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	1 cut(s)	15
CsiI	ACCWGGT	1 cut(s)	354
Csp6I	GTAC	3 cut(s)	22, 256, 283
CviAII	CATG	2 cut(s)	275, 377
CviJI	RGCY	7 cut(s)	76, 129, 144, 166, 270, 295, 532
CviKI_1	RGCY	7 cut(s)	76, 129, 144, 166, 270, 295, 532
CviQI	GTAC	3 cut(s)	22, 256, 283
DdeI	CTNAG	1 cut(s)	236
DraIII	CACNNNGTG	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
EciI	GGCGGA	1 cut(s)	402
Eco81I	CCTNAGG	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	181, 286, 354
FaeI	CATG	2 cut(s)	278, 380
FaiI	YATR	8 cut(s)	93, 254, 276, 378, 404, 431, 433, 435
FalI	AAGNNNNNCTT	2 cut(s)	486, 518
FaqI	GGGAC	1 cut(s)	503
FatI	CATG	2 cut(s)	274, 376
Fnu4HI	GCNGC	1 cut(s)	462
FokI	GGATG	1 cut(s)	320
Fsp4HI	GCNGC	1 cut(s)	462
FspAI	RTGCGCAY	1 cut(s)	14
FspBI	CTAG	1 cut(s)	260
FspI	TGCGCA	1 cut(s)	14
GlaI	GCGC	1 cut(s)	14
GluI	GCNGC	1 cut(s)	462
GsuI	CTGGAG	1 cut(s)	165
HapII	CCGG	1 cut(s)	42
HhaI	GCGC	1 cut(s)	15
Hin1II	CATG	2 cut(s)	278, 380
Hin6I	GCGC	1 cut(s)	13
HinP1I	GCGC	1 cut(s)	13
HincII	GTYRAC	1 cut(s)	343
HindII	GTYRAC	1 cut(s)	343
HpaI	GTTAAC	1 cut(s)	343
HpaII	CCGG	1 cut(s)	42
HphI	GGTGA	2 cut(s)	56, 344
Hpy166II	GTNNAC	3 cut(s)	24, 343, 352
Hpy8I	GTNNAC	3 cut(s)	24, 343, 352
HpyAV	CCTTC	1 cut(s)	90
HpyCH4III	ACNGT	1 cut(s)	121
HpyCH4V	TGCA	4 cut(s)	125, 317, 388, 461
HpyF3I	CTNAG	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	278, 380
HspAI	GCGC	1 cut(s)	13
KspAI	GTTAAC	1 cut(s)	343
Lsp1109I	GCAGC	1 cut(s)	473
MabI	ACCWGGT	1 cut(s)	354
MaeI	CTAG	1 cut(s)	260
MboII	GAAGA	4 cut(s)	230, 298, 311, 506
MluCI	AATT	1 cut(s)	36
MnlI	CCTC	6 cut(s)	95, 145, 151, 373, 462, 528
MseI	TTAA	3 cut(s)	8, 342, 420
MslI	CAYNNNNRTG	2 cut(s)	213, 422
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	3 cut(s)	183, 288, 356
Mva1269I	GAATGC	2 cut(s)	208, 503
MvaI	CCWGG	3 cut(s)	183, 288, 356
NlaIII	CATG	2 cut(s)	278, 380
NlaIV	GGNNCC	1 cut(s)	513
NmeAIII	GCCGAG	1 cut(s)	120
NsbI	TGCGCA	1 cut(s)	14
PaqCI	CACCTGC	1 cut(s)	379
PcsI	WCGNNNNNNNCGW	1 cut(s)	489
PctI	GAATGC	2 cut(s)	208, 503
PkrI	GCNGC	1 cut(s)	463
Psp6I	CCWGG	3 cut(s)	181, 286, 354
PspGI	CCWGG	3 cut(s)	181, 286, 354
PspN4I	GGNNCC	1 cut(s)	513
PstI	CTGCAG	1 cut(s)	463
RsaI	GTAC	3 cut(s)	23, 257, 284
RsaNI	GTAC	3 cut(s)	22, 256, 283
RseI	CAYNNNNRTG	2 cut(s)	213, 422
SaqAI	TTAA	3 cut(s)	8, 342, 420
SatI	GCNGC	1 cut(s)	462
ScrFI	CCNGG	3 cut(s)	183, 288, 356
SexAI	ACCWGGT	1 cut(s)	354
SfcI	CTRYAG	1 cut(s)	459
SmiMI	CAYNNNNRTG	2 cut(s)	213, 422
Sse9I	AATT	1 cut(s)	36
SsiI	CCGC	2 cut(s)	80, 413
SspMI	CTAG	1 cut(s)	260
StyD4I	CCNGG	3 cut(s)	181, 286, 354
TaaI	ACNGT	1 cut(s)	121
TasI	AATT	1 cut(s)	36
Tru1I	TTAA	3 cut(s)	8, 342, 420
Tru9I	TTAA	3 cut(s)	8, 342, 420
TscAI	CASTG	2 cut(s)	76, 463
TseI	GCWGC	1 cut(s)	461
TspDTI	ATGAA	4 cut(s)	48, 298, 418, 450
TspRI	CASTG	2 cut(s)	76, 463
XapI	RAATTY	1 cut(s)	36
XspI	CTAG	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.