Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

19724790 .. 19726793

Gene Structure 2004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g24150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGAGATTTCTGTGCCTATCTTCTTCTTCTTGTTAAGCTTGCTTTTCTTCTCTGCAATATCTGAGGCTTCCAAATGCTCAGTTCAAGAGTTTCCTGTGGTAAGGAATATCAGTGAGCTTCCGCAGAATAGCTATGGCAGGGGAGGTTTGGCACACACTACTGTTGCAGGGTCACTCTTGCATGGCTTGAAAGAGGTTGAAGTTTGGCTGCAAACACTTTCTCCAGGATCAGGCACACCGATACACAGGCATTCGTGTGAAGAAGTGTTTGTTGTCCTGAAGGGTAGTGGAACTGTGTACCTTGCACCAAACTCACATGAGAAGTACCCTGGAAAGCCACAAGAGTTCTCTATCTTTGCAAATAGCACATTTCAGATCCCTGTTAACGATGTTCACCAGATCCGTAATACAAATGAGCTCGAGGATTTGCAAGTGCTTGTTGTCATATCTCGTCCGCCCATTAAAGTGTTCATATATGAAAACTGGTCAATGCCTCACACTGCATCCAAGCTAAAGTTCCCCTACTATTGGGACGAAGAATGTCTTGAACTGGAACCACCTCCAAAGGATGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

194

Amino Acids

21.73

Weight (kDa)

5.33

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	24 - 185	2.1e-92	Auxin binding protein
Cupin_2	PF07883	70 - 149	8e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	125, 458
AclWI	GGATC	3 cut(s)	238, 373, 397
AcuI	CTGAAG	1 cut(s)	302
AfaI	GTAC	2 cut(s)	302, 329
AfiI	CCNNNNNNNGG	2 cut(s)	233, 531
AgsI	TTSAA	4 cut(s)	89, 193, 203, 551
AjnI	CCWGG	2 cut(s)	226, 331
AjuI	GAANNNNNNNTTGG	2 cut(s)	503, 535
AluBI	AGCT	6 cut(s)	42, 121, 135, 421, 514, 577
AluI	AGCT	6 cut(s)	42, 121, 135, 421, 514, 577
Alw21I	GWGCWC	1 cut(s)	423
AlwI	GGATC	3 cut(s)	238, 373, 397
Ama87I	CYCGRG	1 cut(s)	422
ApeKI	GCWGC	1 cut(s)	211
AsuHPI	GGTGA	1 cut(s)	389
AvaI	CYCGRG	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	423
BbvI	GCAGC	1 cut(s)	198
BciT130I	CCWGG	2 cut(s)	228, 333
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
Bme1390I	CCNGG	2 cut(s)	228, 333
BmeT110I	CYCGRG	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	2 cut(s)	228, 333
BmsI	GCATC	1 cut(s)	515
BpmI	CTGGAG	1 cut(s)	210
BsaJI	CCNNGG	1 cut(s)	331
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	2 cut(s)	233, 531
Bse1I	ACTGG	2 cut(s)	491, 558
BseBI	CCWGG	2 cut(s)	228, 333
BseDI	CCNNGG	1 cut(s)	331
BseGI	GGATG	2 cut(s)	506, 577
BseLI	CCNNNNNNNGG	2 cut(s)	233, 531
BseMII	CTCAG	2 cut(s)	57, 96
BseNI	ACTGG	2 cut(s)	491, 558
BseXI	GCAGC	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	423
BsiHKCI	CYCGRG	1 cut(s)	422
BslFI	GGGAC	1 cut(s)	548
BslI	CCNNNNNNNGG	2 cut(s)	233, 531
BsmFI	GGGAC	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	253
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	423
Bsp143I	GATC	3 cut(s)	230, 378, 402
BspACI	CCGC	2 cut(s)	125, 458
BspCNI	CTCAG	2 cut(s)	58, 95
BspLI	GGNNCC	1 cut(s)	558
BspPI	GGATC	3 cut(s)	238, 373, 397
BsrI	ACTGG	2 cut(s)	491, 558
BssECI	CCNNGG	1 cut(s)	331
BssMI	GATC	3 cut(s)	230, 378, 402
Bst2UI	CCWGG	2 cut(s)	228, 333
Bst4CI	ACNGT	2 cut(s)	166, 298
BstC8I	GCNNGC	1 cut(s)	44
BstDEI	CTNAG	3 cut(s)	6, 66, 82
BstF5I	GGATG	2 cut(s)	506, 577
BstKTI	GATC	3 cut(s)	233, 381, 405
BstMBI	GATC	3 cut(s)	230, 378, 402
BstNI	CCWGG	2 cut(s)	228, 333
BstSCI	CCNGG	2 cut(s)	226, 331
BstV1I	GCAGC	1 cut(s)	198
BstX2I	RGATCY	2 cut(s)	378, 402
BstYI	RGATCY	2 cut(s)	378, 402
BtsCI	GGATG	2 cut(s)	506, 577
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	121, 501
Cac8I	GCNNGC	1 cut(s)	44
Csp6I	GTAC	2 cut(s)	301, 328
CviAII	CATG	2 cut(s)	185, 320
CviQI	GTAC	2 cut(s)	301, 328
DdeI	CTNAG	3 cut(s)	6, 66, 82
DpnI	GATC	3 cut(s)	232, 380, 404
DpnII	GATC	3 cut(s)	230, 378, 402
EciI	GGCGGA	1 cut(s)	447
Ecl136II	GAGCTC	1 cut(s)	421
Eco24I	GRGCYC	1 cut(s)	423
Eco53kI	GAGCTC	1 cut(s)	421
Eco57I	CTGAAG	1 cut(s)	302
Eco88I	CYCGRG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	421
EcoRII	CCWGG	2 cut(s)	226, 331
EcoT38I	GRGCYC	1 cut(s)	423
FaeI	CATG	2 cut(s)	188, 323
FaiI	YATR	7 cut(s)	138, 186, 321, 449, 476, 478, 480
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	2 cut(s)	184, 319
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	1 cut(s)	493
FriOI	GRGCYC	1 cut(s)	423
Fsp4HI	GCNGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	1 cut(s)	210
Hin1II	CATG	2 cut(s)	188, 323
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	40
HpaI	GTTAAC	1 cut(s)	388
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	3 cut(s)	301, 388, 397
Hpy188I	TCNGA	2 cut(s)	67, 378
Hpy188III	TCNNGA	3 cut(s)	89, 280, 548
Hpy8I	GTNNAC	3 cut(s)	301, 388, 397
HpyAV	CCTTC	1 cut(s)	277
HpyCH4III	ACNGT	2 cut(s)	166, 298
HpyCH4V	TGCA	8 cut(s)	59, 170, 184, 214, 308, 362, 433, 506
HpyF3I	CTNAG	3 cut(s)	6, 66, 82
Hsp92II	CATG	2 cut(s)	188, 323
KspAI	GTTAAC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	230, 378, 402
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	515
MaeIII	GTNAC	1 cut(s)	174
MalI	GATC	3 cut(s)	232, 380, 404
MboI	GATC	3 cut(s)	230, 378, 402
MboII	GAAGA	6 cut(s)	16, 19, 22, 43, 275, 551
MflI	RGATCY	2 cut(s)	378, 402
MhlI	GDGCHC	1 cut(s)	423
MnlI	CCTC	6 cut(s)	61, 140, 190, 418, 507, 573
MseI	TTAA	3 cut(s)	38, 387, 465
MslI	CAYNNNNRTG	2 cut(s)	258, 467
MspR9I	CCNGG	2 cut(s)	228, 333
Mva1269I	GAATGC	1 cut(s)	253
MvaI	CCWGG	2 cut(s)	228, 333
NdeII	GATC	3 cut(s)	230, 378, 402
NlaIII	CATG	2 cut(s)	188, 323
NlaIV	GGNNCC	1 cut(s)	558
NmuCI	GTSAC	1 cut(s)	174
PaeR7I	CTCGAG	1 cut(s)	422
PctI	GAATGC	1 cut(s)	253
PfoI	TCCNGGA	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	213
Psp124BI	GAGCTC	1 cut(s)	423
Psp6I	CCWGG	2 cut(s)	226, 331
PspGI	CCWGG	2 cut(s)	226, 331
PspN4I	GGNNCC	1 cut(s)	558
PspXI	VCTCGAGB	1 cut(s)	422
PsuI	RGATCY	2 cut(s)	378, 402
RsaI	GTAC	2 cut(s)	302, 329
RsaNI	GTAC	2 cut(s)	301, 328
RseI	CAYNNNNRTG	2 cut(s)	258, 467
SacI	GAGCTC	1 cut(s)	423
SaqAI	TTAA	3 cut(s)	38, 387, 465
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	3 cut(s)	230, 378, 402
ScrFI	CCNGG	2 cut(s)	228, 333
SduI	GDGCHC	1 cut(s)	423
SfaNI	GCATC	1 cut(s)	515
Sfr274I	CTCGAG	1 cut(s)	422
SlaI	CTCGAG	1 cut(s)	422
SmiMI	CAYNNNNRTG	2 cut(s)	258, 467
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
SsiI	CCGC	2 cut(s)	125, 458
SstI	GAGCTC	1 cut(s)	423
StyD4I	CCNGG	2 cut(s)	226, 331
TaaI	ACNGT	2 cut(s)	166, 298
TaqI	TCGA	1 cut(s)	423
Tru1I	TTAA	3 cut(s)	38, 387, 465
Tru9I	TTAA	3 cut(s)	38, 387, 465
TscAI	CASTG	2 cut(s)	121, 508
TseFI	GTSAC	1 cut(s)	174
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	174
TspDTI	ATGAA	2 cut(s)	463, 495
TspGWI	ACGGA	1 cut(s)	395
TspRI	CASTG	2 cut(s)	121, 508
XhoI	CTCGAG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.