Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

54994222 .. 54995987

Gene Structure 1766 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26198

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGCTGGGACTGGGAGTATCTTCCTCTTCTTCTTCTTGAGCTTGCTGTCCTTCTCTGCAATATCTGAAGCTTCCAAATGCTCAGCTCAAGAGTTTCCTGTGGTAAGGAATATCAGTGAGCTTCCGCAGAATAACTATGGAAGGGGAGGTTTGGCACACACTACTGTTGCAGGCTCACTCTTGCTCGGCTTGAAAGAGGTTGAGGTTTGGCTACAAACATTTTCTCCAGGGTCAGGCACACCGATACACAGGCATTCTTGTGAAGAAGTGTTTGTTGTCCTAAGGGGTAGTGGAACTATGTACCTAGCACCAAGCTCACATGAGAAGTACCCTGGAAAGCCAGAAGAGTTCTTCATCTTTGCAAATAGCACATTTCACATCCCTGTTAACGATGTTCACCAGGTGCGAAATACAAATGAGCATGAGGATTTGCAGGTGCTTGTTGTCATATCTCGTCCGCCCATTAAAGTGTTCATATATGAAAACTGGTCAATGCCTCACACTGCAGCGAAACTAAAGTTTCCCTACGATTGGGACGAAGAATGCCTTGAACTGGAACCACCTCCAAAGGATGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

193

Amino Acids

21.65

Weight (kDa)

5.31

Isoelectric Point (pI)

51.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	24 - 185	2.4e-91	Auxin binding protein
Cupin_2	PF07883	70 - 149	6.6e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	424
Acc36I	ACCTGC	1 cut(s)	424
AciI	CCGC	2 cut(s)	125, 458
AcuI	CTGAAG	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	403
AfaI	GTAC	2 cut(s)	302, 329
AfiI	CCNNNNNNNGG	3 cut(s)	233, 531, 553
AgsI	TTSAA	2 cut(s)	193, 551
AjnI	CCWGG	3 cut(s)	226, 331, 399
AluBI	AGCT	6 cut(s)	42, 71, 86, 121, 315, 577
AluI	AGCT	6 cut(s)	42, 71, 86, 121, 315, 577
ApeKI	GCWGC	1 cut(s)	506
AsuHPI	GGTGA	1 cut(s)	389
AxyI	CCTNAGG	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	518
BciT130I	CCWGG	3 cut(s)	228, 333, 401
BfaI	CTAG	1 cut(s)	305
BfmI	CTRYAG	1 cut(s)	504
BfuAI	ACCTGC	1 cut(s)	424
BisI	GCNGC	1 cut(s)	507
BlpI	GCTNAGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	508
Bme1390I	CCNGG	3 cut(s)	228, 333, 401
BmiI	GGNNCC	1 cut(s)	558
BmrFI	CCNGG	3 cut(s)	228, 333, 401
BmrI	ACTGGG	1 cut(s)	21
BmuI	ACTGGG	1 cut(s)	21
BpmI	CTGGAG	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	82
BpuEI	CTTGAG	2 cut(s)	58, 72
BsaJI	CCNNGG	2 cut(s)	227, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	208, 238
Bsc4I	CCNNNNNNNGG	3 cut(s)	233, 531, 553
Bse1I	ACTGG	3 cut(s)	16, 491, 558
Bse21I	CCTNAGG	1 cut(s)	281
BseBI	CCWGG	3 cut(s)	228, 333, 401
BseDI	CCNNGG	2 cut(s)	227, 331
BseGI	GGATG	2 cut(s)	378, 577
BseLI	CCNNNNNNNGG	3 cut(s)	233, 531, 553
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	3 cut(s)	16, 491, 558
BseXI	GCAGC	1 cut(s)	518
BseYI	CCCAGC	1 cut(s)	5
BslFI	GGGAC	2 cut(s)	22, 548
BslI	CCNNNNNNNGG	3 cut(s)	233, 531, 553
BsmFI	GGGAC	2 cut(s)	22, 548
BsmI	GAATGC	2 cut(s)	253, 548
Bsp1720I	GCTNAGC	1 cut(s)	82
BspACI	CCGC	2 cut(s)	125, 458
BspCNI	CTCAG	1 cut(s)	95
BspLI	GGNNCC	1 cut(s)	558
BspMAI	CTGCAG	1 cut(s)	508
BspMI	ACCTGC	1 cut(s)	424
BsrI	ACTGG	3 cut(s)	16, 491, 558
BssECI	CCNNGG	2 cut(s)	227, 331
Bst2UI	CCWGG	3 cut(s)	228, 333, 401
Bst4CI	ACNGT	1 cut(s)	166
Bst6I	CTCTTC	2 cut(s)	32, 339
BstC8I	GCNNGC	2 cut(s)	44, 172
BstDEI	CTNAG	2 cut(s)	82, 281
BstF5I	GGATG	2 cut(s)	378, 577
BstNI	CCWGG	3 cut(s)	228, 333, 401
BstSCI	CCNGG	3 cut(s)	226, 331, 399
BstSFI	CTRYAG	1 cut(s)	504
BstV1I	GCAGC	1 cut(s)	518
Bsu36I	CCTNAGG	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	378, 577
BtsI	GCAGTG	1 cut(s)	501
BtsIMutI	CAGTG	2 cut(s)	121, 501
BveI	ACCTGC	1 cut(s)	424
Cac8I	GCNNGC	2 cut(s)	44, 172
CsiI	ACCWGGT	1 cut(s)	399
Csp6I	GTAC	2 cut(s)	301, 328
CviAII	CATG	2 cut(s)	320, 422
CviQI	GTAC	2 cut(s)	301, 328
DdeI	CTNAG	2 cut(s)	82, 281
DraIII	CACNNNGTG	1 cut(s)	403
Eam1104I	CTCTTC	2 cut(s)	32, 339
EarI	CTCTTC	2 cut(s)	32, 339
EciI	GGCGGA	1 cut(s)	447
Eco57I	CTGAAG	1 cut(s)	87
Eco81I	CCTNAGG	1 cut(s)	281
EcoRII	CCWGG	3 cut(s)	226, 331, 399
FaeI	CATG	2 cut(s)	323, 425
FaiI	YATR	8 cut(s)	138, 299, 321, 423, 449, 476, 478, 480
FalI	AAGNNNNNCTT	2 cut(s)	531, 563
FaqI	GGGAC	2 cut(s)	22, 548
FatI	CATG	2 cut(s)	319, 421
Fnu4HI	GCNGC	1 cut(s)	507
FokI	GGATG	1 cut(s)	365
Fsp4HI	GCNGC	1 cut(s)	507
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	507
GsaI	CCCAGC	1 cut(s)	9
GsuI	CTGGAG	1 cut(s)	210
Hin1II	CATG	2 cut(s)	323, 425
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	1 cut(s)	69
HpaI	GTTAAC	1 cut(s)	388
HphI	GGTGA	1 cut(s)	389
Hpy166II	GTNNAC	2 cut(s)	388, 397
Hpy188I	TCNGA	1 cut(s)	67
Hpy188III	TCNNGA	2 cut(s)	37, 89
Hpy8I	GTNNAC	2 cut(s)	388, 397
HpyAV	CCTTC	2 cut(s)	61, 135
HpyCH4III	ACNGT	1 cut(s)	166
HpyCH4V	TGCA	5 cut(s)	59, 170, 362, 433, 506
HpyF3I	CTNAG	2 cut(s)	82, 281
Hsp92II	CATG	2 cut(s)	323, 425
KspAI	GTTAAC	1 cut(s)	388
Lsp1109I	GCAGC	1 cut(s)	518
MabI	ACCWGGT	1 cut(s)	399
MaeI	CTAG	1 cut(s)	305
MboII	GAAGA	8 cut(s)	13, 19, 22, 25, 275, 343, 356, 551
MnlI	CCTC	7 cut(s)	35, 140, 190, 196, 418, 507, 573
MseI	TTAA	2 cut(s)	387, 465
MslI	CAYNNNNRTG	2 cut(s)	258, 467
MspR9I	CCNGG	3 cut(s)	228, 333, 401
Mva1269I	GAATGC	2 cut(s)	253, 548
MvaI	CCWGG	3 cut(s)	228, 333, 401
NlaIII	CATG	2 cut(s)	323, 425
NlaIV	GGNNCC	1 cut(s)	558
NmeAIII	GCCGAG	1 cut(s)	165
PaqCI	CACCTGC	1 cut(s)	424
PcsI	WCGNNNNNNNCGW	1 cut(s)	534
PctI	GAATGC	2 cut(s)	253, 548
PkrI	GCNGC	1 cut(s)	508
Psp6I	CCWGG	3 cut(s)	226, 331, 399
PspFI	CCCAGC	1 cut(s)	5
PspGI	CCWGG	3 cut(s)	226, 331, 399
PspN4I	GGNNCC	1 cut(s)	558
PstI	CTGCAG	1 cut(s)	508
RsaI	GTAC	2 cut(s)	302, 329
RsaNI	GTAC	2 cut(s)	301, 328
RseI	CAYNNNNRTG	2 cut(s)	258, 467
SaqAI	TTAA	2 cut(s)	387, 465
SatI	GCNGC	1 cut(s)	507
ScrFI	CCNGG	3 cut(s)	228, 333, 401
SexAI	ACCWGGT	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	2 cut(s)	258, 467
SmlI	CTYRAG	2 cut(s)	37, 87
SmoI	CTYRAG	2 cut(s)	37, 87
SsiI	CCGC	2 cut(s)	125, 458
SspMI	CTAG	1 cut(s)	305
StyD4I	CCNGG	3 cut(s)	226, 331, 399
TaaI	ACNGT	1 cut(s)	166
Tru1I	TTAA	2 cut(s)	387, 465
Tru9I	TTAA	2 cut(s)	387, 465
TscAI	CASTG	2 cut(s)	121, 508
TseI	GCWGC	1 cut(s)	506
TspDTI	ATGAA	3 cut(s)	343, 463, 495
TspRI	CASTG	2 cut(s)	121, 508
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.