Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0010063

Physical Location & Seq

Genomic Coordinates Reverse (-)

53336943 .. 53338446

Gene Structure 1504 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G029230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGCCGGGAGTATCTTCCTCTTCTTCTTCTTGAGCTTGCTGTCCTTCTCTGCAATATCTGAAGCTTCCAAATGCTCGGTTCGAGAGTTTCCTGTGGTAAGGAATATCAGTGAGCTTCCGCAGAATAACTATGGAAGGGGAGGTTTGGCACACACTACTGTTGCAGGCTCACTCTTGCTTGGCTTGAAAGAGGTTGAGGTTTGGCTACAAACATTTTCTCCAGGGTCAGGCACACCGATACACAGGCATTCTTGTGAAGAAGTGTTTGTTGTCCTAAGGGGTAGTGGAACTATGTACCTAGCACCAAGCTCACACGAGAAGTACCCTGGAAAGCCAGAAGAGTTCTTCATCTTTGCAAATAGCACATTTCACATCCCTGTTAACGATGTTCACCAGGTGCGAAATACAAATGAGCATGAGGATTTGCAGGTGCTTGTTGTCATATCTCGTCCGCCCGTTAAAGTGTTCATATATGAAAACTGGTCAATGCCTCACACTGCAGCGAAACTGAAGTTTCCCTACGATTGGGACAAAGAATGCCTTGAACTGGAACCACCTCCAAAGGATGAGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000910 GO:0000911 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005788 GO:0006275 GO:0007049 GO:0008150 GO:0008270 GO:0008361 GO:0009653 GO:0009826 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010011 GO:0010556 GO:0010557 GO:0010564 GO:0010604 GO:0012505 GO:0016043 GO:0016049 GO:0019219 GO:0019222 GO:0022402 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0032502 GO:0032506 GO:0032535 GO:0032875 GO:0032877 GO:0032989 GO:0040007 GO:0042562 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045740 GO:0045787 GO:0045793 GO:0045935 GO:0046872 GO:0046914 GO:0048518 GO:0048522 GO:0048589 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0051052 GO:0051054 GO:0051171 GO:0051173 GO:0051301 GO:0051302 GO:0051726 GO:0051781 GO:0060255 GO:0060560 GO:0061640 GO:0065007 GO:0065008 GO:0070013 GO:0071840 GO:0080090 GO:0090066 GO:0090068 GO:0090329 GO:1902410 GO:1903047 GO:2000105 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Auxin_BP

Protein Analysis

191

Amino Acids

21.54

Weight (kDa)

5.73

Isoelectric Point (pI)

51.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Auxin_BP	PF02041	22 - 183	1.3e-91	Auxin binding protein
Cupin_2	PF07883	68 - 147	6.4e-08	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010063)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G02980
fragaria_vesca	FvH4_2g24150 FvH4_2g24150 FvH4_2g24150
malus_domestica	MD03G1271500.v1.1 MD11G1292100.v1.1
prunus_persica	Prupe.8G247700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0291961
rosa_laevigata	RLG00000012075
rosa_multiflora	Rmu_co8386397.1_g000001 Rmu_sc0026994.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175550 Rroxscaffold_7G00177990
rosa_rugosa	Rorug06G0222000 Rorug06G0222100 Rorug06G0222200
rosa_samantha	Rh6AG335800 Rh6BG343200 Rh6CG349400 Rh6DG336200
rosa_wichuraiana	Rw6G029230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	418
Acc36I	ACCTGC	1 cut(s)	418
AciI	CCGC	2 cut(s)	119, 452
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	2 cut(s)	81, 530
AdeI	CACNNNGTG	1 cut(s)	397
AfaI	GTAC	2 cut(s)	296, 323
AfiI	CCNNNNNNNGG	3 cut(s)	227, 525, 547
AgsI	TTSAA	2 cut(s)	187, 545
AjnI	CCWGG	3 cut(s)	220, 325, 393
AluBI	AGCT	5 cut(s)	36, 65, 115, 309, 571
AluI	AGCT	5 cut(s)	36, 65, 115, 309, 571
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	500
AsuC2I	CCSGG	1 cut(s)	7
AsuHPI	GGTGA	1 cut(s)	383
AxyI	CCTNAGG	1 cut(s)	275
BarI	GAAGNNNNNNTAC	2 cut(s)	503, 535
BauI	CACGAG	1 cut(s)	314
BbvI	GCAGC	1 cut(s)	512
BciT130I	CCWGG	3 cut(s)	222, 327, 395
BcnI	CCSGG	1 cut(s)	7
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	4 cut(s)	7, 222, 327, 395
BmiI	GGNNCC	1 cut(s)	552
BmrFI	CCNGG	4 cut(s)	7, 222, 327, 395
BpmI	CTGGAG	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	52
BpuMI	CCSGG	1 cut(s)	7
BsaJI	CCNNGG	2 cut(s)	221, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	202, 232
Bsc4I	CCNNNNNNNGG	3 cut(s)	227, 525, 547
Bse1I	ACTGG	2 cut(s)	485, 552
Bse21I	CCTNAGG	1 cut(s)	275
BseBI	CCWGG	3 cut(s)	222, 327, 395
BseDI	CCNNGG	2 cut(s)	221, 325
BseGI	GGATG	2 cut(s)	372, 571
BseLI	CCNNNNNNNGG	3 cut(s)	227, 525, 547
BseNI	ACTGG	2 cut(s)	485, 552
BseXI	GCAGC	1 cut(s)	512
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	542
BslI	CCNNNNNNNGG	3 cut(s)	227, 525, 547
BsmFI	GGGAC	1 cut(s)	542
BsmI	GAATGC	2 cut(s)	247, 542
BsnI	GGCC	1 cut(s)	5
BspACI	CCGC	2 cut(s)	119, 452
BspANI	GGCC	1 cut(s)	5
BspLI	GGNNCC	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	418
BsrI	ACTGG	2 cut(s)	485, 552
BssECI	CCNNGG	2 cut(s)	221, 325
BssSI	CACGAG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	314
Bst2UI	CCWGG	3 cut(s)	222, 327, 395
Bst4CI	ACNGT	1 cut(s)	160
Bst6I	CTCTTC	2 cut(s)	26, 333
BstC8I	GCNNGC	2 cut(s)	38, 166
BstDEI	CTNAG	1 cut(s)	275
BstF5I	GGATG	2 cut(s)	372, 571
BstNI	CCWGG	3 cut(s)	222, 327, 395
BstSCI	CCNGG	4 cut(s)	5, 220, 325, 393
BstSFI	CTRYAG	1 cut(s)	498
BstV1I	GCAGC	1 cut(s)	512
Bsu36I	CCTNAGG	1 cut(s)	275
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	372, 571
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	2 cut(s)	115, 495
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	38, 166
CsiI	ACCWGGT	1 cut(s)	393
Csp6I	GTAC	2 cut(s)	295, 322
CviAII	CATG	1 cut(s)	416
CviQI	GTAC	2 cut(s)	295, 322
DdeI	CTNAG	1 cut(s)	275
DraIII	CACNNNGTG	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	26, 333
EarI	CTCTTC	2 cut(s)	26, 333
EciI	GGCGGA	1 cut(s)	441
Eco57I	CTGAAG	2 cut(s)	81, 530
Eco81I	CCTNAGG	1 cut(s)	275
EcoRII	CCWGG	3 cut(s)	220, 325, 393
FaeI	CATG	1 cut(s)	419
FaiI	YATR	7 cut(s)	132, 293, 417, 443, 470, 472, 474
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	1 cut(s)	542
FatI	CATG	1 cut(s)	415
Fnu4HI	GCNGC	1 cut(s)	501
FokI	GGATG	1 cut(s)	359
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	1 cut(s)	299
GluI	GCNGC	1 cut(s)	501
GsuI	CTGGAG	1 cut(s)	204
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	6
Hin1II	CATG	1 cut(s)	419
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HindIII	AAGCTT	1 cut(s)	63
HpaI	GTTAAC	1 cut(s)	382
HpaII	CCGG	1 cut(s)	6
HphI	GGTGA	1 cut(s)	383
Hpy166II	GTNNAC	2 cut(s)	382, 391
Hpy188I	TCNGA	1 cut(s)	61
Hpy188III	TCNNGA	2 cut(s)	31, 83
Hpy8I	GTNNAC	2 cut(s)	382, 391
HpyAV	CCTTC	2 cut(s)	55, 129
HpyCH4III	ACNGT	1 cut(s)	160
HpyCH4V	TGCA	5 cut(s)	53, 164, 356, 427, 500
HpyF3I	CTNAG	1 cut(s)	275
Hsp92II	CATG	1 cut(s)	419
KspAI	GTTAAC	1 cut(s)	382
Lsp1109I	GCAGC	1 cut(s)	512
MabI	ACCWGGT	1 cut(s)	393
MaeI	CTAG	1 cut(s)	299
MboII	GAAGA	7 cut(s)	7, 13, 16, 19, 269, 337, 350
MnlI	CCTC	7 cut(s)	29, 134, 184, 190, 412, 501, 567
MseI	TTAA	2 cut(s)	381, 459
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	1 cut(s)	6
MspR9I	CCNGG	4 cut(s)	7, 222, 327, 395
Mva1269I	GAATGC	2 cut(s)	247, 542
MvaI	CCWGG	3 cut(s)	222, 327, 395
NciI	CCSGG	1 cut(s)	7
NlaIII	CATG	1 cut(s)	419
NlaIV	GGNNCC	1 cut(s)	552
PaqCI	CACCTGC	1 cut(s)	418
PctI	GAATGC	2 cut(s)	247, 542
PkrI	GCNGC	1 cut(s)	502
Psp6I	CCWGG	3 cut(s)	220, 325, 393
PspGI	CCWGG	3 cut(s)	220, 325, 393
PspN4I	GGNNCC	1 cut(s)	552
PstI	CTGCAG	1 cut(s)	502
RsaI	GTAC	2 cut(s)	296, 323
RsaNI	GTAC	2 cut(s)	295, 322
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	2 cut(s)	381, 459
SatI	GCNGC	1 cut(s)	501
ScrFI	CCNGG	4 cut(s)	7, 222, 327, 395
SexAI	ACCWGGT	1 cut(s)	393
SfcI	CTRYAG	1 cut(s)	498
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	31
SmoI	CTYRAG	1 cut(s)	31
SsiI	CCGC	2 cut(s)	119, 452
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	4 cut(s)	5, 220, 325, 393
TaaI	ACNGT	1 cut(s)	160
TaqI	TCGA	1 cut(s)	82
Tru1I	TTAA	2 cut(s)	381, 459
Tru9I	TTAA	2 cut(s)	381, 459
TscAI	CASTG	2 cut(s)	115, 502
TseI	GCWGC	1 cut(s)	500
TspDTI	ATGAA	3 cut(s)	337, 457, 489
TspRI	CASTG	2 cut(s)	115, 502
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.