Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Forward (+)

1464467 .. 1466174

Gene Structure 1708 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G03320.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGCAGGGTTTGGCGGCGACCACCACCAACCGTGGCTCTCTCACCTTCCTCGCTCCGAGGAACCATAGTCCAATTTCAAAGAAATTTGTGAATCCAAGAGTGTTCTTTCCCAACGTTGATTCATCCGCAAAATTAAGATTATCAGCTAGCTCAATTTCACGGAGATGTCCACGAGAGATTGCTCCTCTTTCAGCAACTGCATCTGTGGACTTTGCAGCAGCAGCAACATCATCCAACCAGCTCTTTGCTAATGGCTTGCCACCATTAGCTCCTGGTTTGAGAAGACACCGGAGACCGATAGAGCCTGCAAGAGTGGCTAAAGATGACTTCTTTAAAATCAAACTGCCTAAAATCGCAGAGAGACCTGAATGGTGGTGGAGGACGTTAGCTTGTGTTCCTTATTTGATATCCCTCCAAATATCTGATGTTGGTTTCTATGTCCAACCTTTTCTCGAAAAGCACGACGCTATTGGGGACATGATATATTTCATCCCGGGAGCGATAAACAGATGGCCGACATGGTTCTTCATGGTGTACTGCTACTTGGGTTATATGTGGGTGGTGAAGAACAAAGAGCTGCCTCATTACTTGAGGTTTCACATGATGATGGGTATGCTTCTTGAAACAGCTCTTCAGGTCATATGGTGCACTAGCAATTTCTTCCCGCTGATTCATTTCAAAGGACGGTTCGGAATGTATTATTGGATGGCCATCGGATTCACCTACATATGTCTGCTTCTCGAATGCATACGGTGCGCTCTTGCTGGAGTCTATGCTCAGATTCCTTTCATGACAGATGCTGCTTCCATTCACACCCTCTTCAACTTGGGAGGTTTTCAGAGACCACTCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

284

Amino Acids

32.52

Weight (kDa)

9.75

Isoelectric Point (pI)

47.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	94 - 268	4.8e-79	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	14, 126, 665
AclI	AACGTT	1 cut(s)	114
AcoI	YGGCCR	2 cut(s)	512, 708
AcsI	RAATTY	1 cut(s)	83
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	536
AgsI	TTSAA	4 cut(s)	78, 623, 679, 823
AjnI	CCWGG	1 cut(s)	271
AjuI	GAANNNNNNNTTGG	2 cut(s)	685, 717
AleI	CACNNNNGTG	1 cut(s)	850
AluBI	AGCT	7 cut(s)	146, 150, 241, 269, 389, 577, 629
AluI	AGCT	7 cut(s)	146, 150, 241, 269, 389, 577, 629
Alw21I	GWGCWC	1 cut(s)	650
Alw26I	GTCTC	3 cut(s)	286, 355, 835
Alw44I	GTGCAC	1 cut(s)	646
AlwNI	CAGNNNCTG	2 cut(s)	197, 800
Ama87I	CYCGRG	1 cut(s)	493
AoxI	GGCC	2 cut(s)	512, 708
ApaLI	GTGCAC	1 cut(s)	646
ApeKI	GCWGC	5 cut(s)	215, 218, 221, 577, 800
ApoI	RAATTY	1 cut(s)	83
AspLEI	GCGC	1 cut(s)	758
AsuC2I	CCSGG	2 cut(s)	494, 495
AsuHPI	GGTGA	3 cut(s)	34, 574, 712
AsuNHI	GCTAGC	1 cut(s)	146
AvaI	CYCGRG	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	650
BalI	TGGCCA	1 cut(s)	710
BauI	CACGAG	1 cut(s)	171
BbsI	GAAGAC	1 cut(s)	289
Bbv12I	GWGCWC	1 cut(s)	650
BbvI	GCAGC	5 cut(s)	227, 230, 233, 564, 787
BccI	CCATC	4 cut(s)	504, 601, 700, 719
BciT130I	CCWGG	1 cut(s)	273
BcnI	CCSGG	2 cut(s)	494, 495
BcoDI	GTCTC	3 cut(s)	286, 355, 835
BfaI	CTAG	2 cut(s)	147, 651
BisI	GCNGC	6 cut(s)	15, 216, 219, 222, 578, 801
BlsI	GCNGC	6 cut(s)	16, 217, 220, 223, 579, 802
Bme1390I	CCNGG	3 cut(s)	273, 494, 495
BmeT110I	CYCGRG	1 cut(s)	493
BmiI	GGNNCC	1 cut(s)	62
BmrFI	CCNGG	3 cut(s)	273, 494, 495
BmsI	GCATC	2 cut(s)	209, 787
BmtI	GCTAGC	1 cut(s)	150
BpiI	GAAGAC	1 cut(s)	289
BpmI	CTGGAG	1 cut(s)	786
BpuEI	CTTGAG	1 cut(s)	610
BpuMI	CCSGG	2 cut(s)	494, 495
BsaBI	GATNNNNATC	1 cut(s)	710
BsaI	GGTCTC	3 cut(s)	286, 355, 835
BsaJI	CCNNGG	3 cut(s)	31, 56, 493
BsaWI	WCCGGW	1 cut(s)	288
Bse8I	GATNNNNATC	1 cut(s)	710
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	3 cut(s)	31, 56, 493
BseGI	GGATG	4 cut(s)	122, 230, 489, 711
BseJI	GATNNNNATC	1 cut(s)	710
BseMII	CTCAG	1 cut(s)	791
BseRI	GAGGAG	1 cut(s)	174
BseSI	GKGCMC	1 cut(s)	650
BseXI	GCAGC	5 cut(s)	227, 230, 233, 564, 787
BshFI	GGCC	2 cut(s)	514, 710
BsiHKAI	GWGCWC	1 cut(s)	650
BsiHKCI	CYCGRG	1 cut(s)	493
BsiSI	CCGG	2 cut(s)	289, 494
BslFI	GGGAC	1 cut(s)	488
BsmAI	GTCTC	3 cut(s)	286, 355, 835
BsmFI	GGGAC	1 cut(s)	488
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	2 cut(s)	514, 710
Bso31I	GGTCTC	3 cut(s)	286, 355, 835
BsoBI	CYCGRG	1 cut(s)	493
Bsp1286I	GDGCHC	1 cut(s)	650
BspACI	CCGC	3 cut(s)	14, 126, 665
BspANI	GGCC	2 cut(s)	514, 710
BspCNI	CTCAG	1 cut(s)	790
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	1 cut(s)	62
BspOI	GCTAGC	1 cut(s)	150
BspQI	GCTCTTC	1 cut(s)	636
BspTNI	GGTCTC	3 cut(s)	286, 355, 835
BssECI	CCNNGG	3 cut(s)	31, 56, 493
BssSI	CACGAG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	171
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	32, 687, 753
Bst6I	CTCTTC	2 cut(s)	636, 824
BstAPI	GCANNNNNTGC	1 cut(s)	753
BstC8I	GCNNGC	3 cut(s)	148, 257, 306
BstDEI	CTNAG	2 cut(s)	777, 848
BstDSI	CCRYGG	1 cut(s)	31
BstF5I	GGATG	4 cut(s)	122, 230, 489, 711
BstHHI	GCGC	1 cut(s)	758
BstMAI	GTCTC	3 cut(s)	286, 355, 835
BstMWI	GCNNNNNNNGC	3 cut(s)	221, 314, 753
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	3 cut(s)	271, 492, 493
BstSLI	GKGCMC	1 cut(s)	650
BstV1I	GCAGC	5 cut(s)	227, 230, 233, 564, 787
BstV2I	GAAGAC	1 cut(s)	289
BsuRI	GGCC	2 cut(s)	514, 710
BtgI	CCRYGG	1 cut(s)	31
BtsCI	GGATG	4 cut(s)	122, 230, 489, 711
Cac8I	GCNNGC	3 cut(s)	148, 257, 306
CaiI	CAGNNNCTG	2 cut(s)	197, 800
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	1 cut(s)	758
Cfr9I	CCCGGG	1 cut(s)	493
CseI	GACGC	1 cut(s)	473
Csp6I	GTAC	1 cut(s)	535
CviAII	CATG	5 cut(s)	478, 519, 529, 601, 790
CviQI	GTAC	1 cut(s)	535
DdeI	CTNAG	2 cut(s)	777, 848
DraI	TTTAAA	1 cut(s)	334
EaeI	YGGCCR	2 cut(s)	512, 708
Eam1104I	CTCTTC	2 cut(s)	636, 824
EarI	CTCTTC	2 cut(s)	636, 824
Eco31I	GGTCTC	3 cut(s)	286, 355, 835
Eco32I	GATATC	1 cut(s)	408
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	493
EcoRII	CCWGG	1 cut(s)	271
EcoRV	GATATC	1 cut(s)	408
EcoT22I	ATGCAT	1 cut(s)	749
FaeI	CATG	5 cut(s)	481, 522, 532, 604, 793
FaqI	GGGAC	1 cut(s)	488
FatI	CATG	5 cut(s)	477, 518, 528, 600, 789
FauI	CCCGC	1 cut(s)	672
FauNDI	CATATG	2 cut(s)	641, 728
Fnu4HI	GCNGC	6 cut(s)	15, 216, 219, 222, 578, 801
FokI	GGATG	4 cut(s)	109, 217, 476, 718
Fsp4HI	GCNGC	6 cut(s)	15, 216, 219, 222, 578, 801
FspBI	CTAG	2 cut(s)	147, 651
GlaI	GCGC	1 cut(s)	757
GluI	GCNGC	6 cut(s)	15, 216, 219, 222, 578, 801
GsuI	CTGGAG	1 cut(s)	786
HaeIII	GGCC	2 cut(s)	514, 710
HapII	CCGG	2 cut(s)	289, 494
HgaI	GACGC	1 cut(s)	473
HhaI	GCGC	1 cut(s)	758
Hin1II	CATG	5 cut(s)	481, 522, 532, 604, 793
Hin6I	GCGC	1 cut(s)	756
HinP1I	GCGC	1 cut(s)	756
HinfI	GANTC	6 cut(s)	91, 119, 670, 717, 768, 781
HpaII	CCGG	2 cut(s)	289, 494
HphI	GGTGA	3 cut(s)	34, 574, 712
Hpy166II	GTNNAC	4 cut(s)	170, 208, 535, 648
Hpy188I	TCNGA	6 cut(s)	57, 424, 692, 716, 780, 840
Hpy188III	TCNNGA	4 cut(s)	452, 620, 740, 790
Hpy8I	GTNNAC	4 cut(s)	170, 208, 535, 648
Hpy99I	CGWCG	1 cut(s)	467
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	3 cut(s)	32, 687, 753
HpyCH4IV	ACGT	2 cut(s)	114, 383
HpyCH4V	TGCA	6 cut(s)	4, 200, 215, 308, 648, 747
HpyF10VI	GCNNNNNNNGC	3 cut(s)	221, 314, 753
HpyF3I	CTNAG	2 cut(s)	777, 848
HpySE526I	ACGT	2 cut(s)	114, 383
Hsp92II	CATG	5 cut(s)	481, 522, 532, 604, 793
HspAI	GCGC	1 cut(s)	756
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	4 cut(s)	58, 187, 274, 497
Lsp1109I	GCAGC	5 cut(s)	227, 230, 233, 564, 787
LweI	GCATC	2 cut(s)	209, 787
MaeI	CTAG	2 cut(s)	147, 651
MaeII	ACGT	2 cut(s)	114, 383
MboII	GAAGA	6 cut(s)	294, 517, 577, 623, 652, 811
MhlI	GDGCHC	1 cut(s)	650
MlsI	TGGCCA	1 cut(s)	710
MluCI	AATT	5 cut(s)	72, 83, 131, 153, 655
MluNI	TGGCCA	1 cut(s)	710
MlyI	GAGTC	1 cut(s)	777
MmeI	TCCRAC	2 cut(s)	258, 466
MnlI	CCTC	9 cut(s)	51, 59, 195, 372, 422, 585, 591, 824, 827
Mox20I	TGGCCA	1 cut(s)	710
Mph1103I	ATGCAT	1 cut(s)	749
MscI	TGGCCA	1 cut(s)	710
MseI	TTAA	2 cut(s)	134, 333
MslI	CAYNNNNRTG	3 cut(s)	163, 605, 850
Msp20I	TGGCCA	1 cut(s)	710
MspA1I	CMGCKG	1 cut(s)	667
MspI	CCGG	2 cut(s)	289, 494
MspR9I	CCNGG	3 cut(s)	273, 494, 495
Mva1269I	GAATGC	1 cut(s)	749
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	3 cut(s)	221, 314, 753
NciI	CCSGG	2 cut(s)	494, 495
NdeI	CATATG	2 cut(s)	641, 728
NheI	GCTAGC	1 cut(s)	146
NlaIII	CATG	5 cut(s)	481, 522, 532, 604, 793
NlaIV	GGNNCC	1 cut(s)	62
NsiI	ATGCAT	1 cut(s)	749
OliI	CACNNNNGTG	1 cut(s)	850
PagI	TCATGA	1 cut(s)	789
PciSI	GCTCTTC	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	1 cut(s)	459
PctI	GAATGC	1 cut(s)	749
PfeI	GAWTC	5 cut(s)	91, 119, 670, 717, 781
PkrI	GCNGC	6 cut(s)	16, 217, 220, 223, 579, 802
PleI	GAGTC	1 cut(s)	776
PpsI	GAGTC	1 cut(s)	776
Psp1406I	AACGTT	1 cut(s)	114
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	62
PstNI	CAGNNNCTG	2 cut(s)	197, 800
RsaI	GTAC	1 cut(s)	536
RsaNI	GTAC	1 cut(s)	535
RseI	CAYNNNNRTG	3 cut(s)	163, 605, 850
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	134, 333
SatI	GCNGC	6 cut(s)	15, 216, 219, 222, 578, 801
SchI	GAGTC	1 cut(s)	777
ScrFI	CCNGG	3 cut(s)	273, 494, 495
SduI	GDGCHC	1 cut(s)	650
SfaNI	GCATC	2 cut(s)	209, 787
SmaI	CCCGGG	1 cut(s)	495
SmiMI	CAYNNNNRTG	3 cut(s)	163, 605, 850
SmlI	CTYRAG	1 cut(s)	589
SmoI	CTYRAG	1 cut(s)	589
Sse9I	AATT	5 cut(s)	72, 83, 131, 153, 655
SsiI	CCGC	3 cut(s)	14, 126, 665
SspMI	CTAG	2 cut(s)	147, 651
StyD4I	CCNGG	3 cut(s)	271, 492, 493
TaaI	ACNGT	3 cut(s)	32, 687, 753
TaiI	ACGT	2 cut(s)	117, 386
TaqI	TCGA	2 cut(s)	453, 741
TaqII	GACCGA	1 cut(s)	310
TasI	AATT	5 cut(s)	72, 83, 131, 153, 655
TatI	WGTACW	1 cut(s)	534
TauI	GCSGC	1 cut(s)	17
TfiI	GAWTC	5 cut(s)	91, 119, 670, 717, 781
Tru1I	TTAA	2 cut(s)	134, 333
Tru9I	TTAA	2 cut(s)	134, 333
TseI	GCWGC	5 cut(s)	215, 218, 221, 577, 800
TspDTI	ATGAA	5 cut(s)	111, 478, 517, 662, 778
TspGWI	ACGGA	1 cut(s)	175
TspMI	CCCGGG	1 cut(s)	493
VneI	GTGCAC	1 cut(s)	646
XapI	RAATTY	1 cut(s)	83
XmaI	CCCGGG	1 cut(s)	493
XspI	CTAG	2 cut(s)	147, 651
Zsp2I	ATGCAT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.