Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Forward (+)

22885103 .. 22887772

Gene Structure 2670 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G232000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCAACCACCTTGGGCTGCCGCCTTAGCGTTCTTGCCTCACCCGCTGCCTCTCGGTATAACGATGTGAACCTCAAAAGACGCAACAAGCCCAACAGGGTTGCATGCAAATCTAACTTGAGTACATTCCCTATATTGTCCAGCAGCAGAAATCTACAACACCCTAATCACAATCTGCACGGCTGGACTTCTACAGGATTGCCAAGCTTGCACCTGTCTGCTACATCATCCACATTGTTAAGGGGAGAACGAGGCAGTGATCAGTCACACAAACTACCAGTGTTACTTAGACAACGCAAGTCTTCAACATTGGCACAAGCAAAAAAGAATAATTCCGTCACTATACCTTTTCCAAAAATGGAAGAGAAGCCCCATTGGTGGTGGAGAACTTTAGCATGTCTCCCCTACTTGATAGCTTTGCAGACGTCTGATACTGGGTTTCTCATTAGACCCTTCACAGAACACTACGAAGTATTTAGAGATTTGGTTTATTATGTCCCAGGAGCAATAACGAGGTTACCTGTCTGGTTCACAATGATATATACCTTACCTACATATTATGGAGTGGTGAAGAAGAAAGAGTGGCCTCACTTCTTTAGGTACCATATAATGATGGCGATGTTGTTAGAAATGATAATGCAAGTGGTAGAGGTTTCGAGCAATTTTTTTCCGCTGATACACTTCGATGGGACATTCAGCATAGAATACTGGGCAGTTGTCTCATTCGCGTACATCTTCATCTTGTTGAAGTGTATAAGGTGTGCTCTTGGTGGCAAGTATGTCAAACTCCCATTCTTTAGCACACCTGCGTTAGCGCATACTCTTTTTGAAATAGAAGGCTACTACAAACCTTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

286

Amino Acids

32.87

Weight (kDa)

9.74

Isoelectric Point (pI)

49.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	814
AatII	GACGTC	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	814
Acc65I	GGTACC	1 cut(s)	600
AccB1I	GGYRCC	1 cut(s)	600
AccII	CGCG	1 cut(s)	728
AciI	CCGC	3 cut(s)	22, 45, 671
AcyI	GRCGYC	1 cut(s)	425
AfaI	GTAC	3 cut(s)	124, 602, 731
AfiI	CCNNNNNNNGG	1 cut(s)	378
AgsI	TTSAA	3 cut(s)	306, 748, 830
AjnI	CCWGG	1 cut(s)	499
AluBI	AGCT	2 cut(s)	207, 416
AluI	AGCT	2 cut(s)	207, 416
Alw21I	GWGCWC	1 cut(s)	766
Alw26I	GTCTC	2 cut(s)	404, 724
AoxI	GGCC	1 cut(s)	584
ApeKI	GCWGC	3 cut(s)	18, 47, 144
Asp718I	GGTACC	1 cut(s)	600
AspLEI	GCGC	1 cut(s)	817
AsuHPI	GGTGA	2 cut(s)	33, 580
BanI	GGYRCC	1 cut(s)	600
BbsI	GAAGAC	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	766
BbvI	GCAGC	3 cut(s)	5, 34, 156
BccI	CCATC	2 cut(s)	607, 680
BceAI	ACGGC	1 cut(s)	196
BciT130I	CCWGG	1 cut(s)	501
BclI	TGATCA	1 cut(s)	259
BcoDI	GTCTC	2 cut(s)	404, 724
BfaI	CTAG	1 cut(s)	856
BfmI	CTRYAG	1 cut(s)	192
BfuAI	ACCTGC	1 cut(s)	814
BisI	GCNGC	4 cut(s)	19, 22, 48, 145
BlsI	GCNGC	4 cut(s)	20, 23, 49, 146
Bme1390I	CCNGG	1 cut(s)	501
BmiI	GGNNCC	1 cut(s)	602
BmrFI	CCNGG	1 cut(s)	501
BmrI	ACTGGG	2 cut(s)	444, 718
BmuI	ACTGGG	2 cut(s)	444, 718
BpiI	GAAGAC	1 cut(s)	294
Bpu10I	CCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	1 cut(s)	139
BsaHI	GRCGYC	1 cut(s)	425
BsaJI	CCNNGG	2 cut(s)	12, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	378
Bse1I	ACTGG	3 cut(s)	278, 439, 713
BseBI	CCWGG	1 cut(s)	501
BseDI	CCNNGG	2 cut(s)	12, 499
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	1 cut(s)	378
BseNI	ACTGG	3 cut(s)	278, 439, 713
BseXI	GCAGC	3 cut(s)	5, 34, 156
BsgI	GTGCAG	1 cut(s)	161
Bsh1236I	CGCG	1 cut(s)	728
BshFI	GGCC	1 cut(s)	586
BshNI	GGYRCC	1 cut(s)	600
BsiHKAI	GWGCWC	1 cut(s)	766
BslFI	GGGAC	2 cut(s)	482, 703
BslI	CCNNNNNNNGG	1 cut(s)	378
BsmAI	GTCTC	2 cut(s)	404, 724
BsmFI	GGGAC	2 cut(s)	482, 703
BsnI	GGCC	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	766
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	3 cut(s)	22, 45, 671
BspANI	GGCC	1 cut(s)	586
BspFNI	CGCG	1 cut(s)	728
BspLI	GGNNCC	1 cut(s)	602
BspMI	ACCTGC	1 cut(s)	814
BspT107I	GGYRCC	1 cut(s)	600
BsrI	ACTGG	3 cut(s)	278, 439, 713
BssECI	CCNNGG	2 cut(s)	12, 499
BssMI	GATC	1 cut(s)	259
BssNI	GRCGYC	1 cut(s)	425
BssT1I	CCWWGG	1 cut(s)	12
Bst2UI	CCWGG	1 cut(s)	501
Bst6I	CTCTTC	1 cut(s)	357
BstACI	GRCGYC	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	106, 209
BstDEI	CTNAG	2 cut(s)	26, 287
BstEII	GGTNACC	1 cut(s)	516
BstF5I	GGATG	1 cut(s)	227
BstFNI	CGCG	1 cut(s)	728
BstHHI	GCGC	1 cut(s)	817
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	2 cut(s)	404, 724
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	3 cut(s)	27, 44, 208
BstNI	CCWGG	1 cut(s)	501
BstNSI	RCATGY	2 cut(s)	108, 399
BstPI	GGTNACC	1 cut(s)	516
BstSCI	CCNGG	1 cut(s)	499
BstSFI	CTRYAG	1 cut(s)	192
BstUI	CGCG	1 cut(s)	728
BstV1I	GCAGC	3 cut(s)	5, 34, 156
BstV2I	GAAGAC	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	586
BtgZI	GCGATG	1 cut(s)	632
BtsCI	GGATG	1 cut(s)	227
BtsI	GCAGTG	1 cut(s)	262
BtsIMutI	CAGTG	2 cut(s)	262, 285
BveI	ACCTGC	1 cut(s)	814
Cac8I	GCNNGC	2 cut(s)	106, 209
CfoI	GCGC	1 cut(s)	817
CseI	GACGC	1 cut(s)	90
Csp6I	GTAC	3 cut(s)	123, 601, 730
CviAII	CATG	2 cut(s)	105, 396
CviJI	RGCY	8 cut(s)	18, 91, 183, 207, 370, 416, 586, 840
CviKI_1	RGCY	8 cut(s)	18, 91, 183, 207, 370, 416, 586, 840
CviQI	GTAC	3 cut(s)	123, 601, 730
DdeI	CTNAG	2 cut(s)	26, 287
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	357
EarI	CTCTTC	1 cut(s)	357
Eco130I	CCWWGG	1 cut(s)	12
Eco91I	GGTNACC	1 cut(s)	516
EcoO65I	GGTNACC	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	499
EcoT14I	CCWWGG	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	2 cut(s)	108, 399
FaqI	GGGAC	2 cut(s)	482, 703
FatI	CATG	2 cut(s)	104, 395
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	4 cut(s)	19, 22, 48, 145
FokI	GGATG	1 cut(s)	214
Fsp4HI	GCNGC	4 cut(s)	19, 22, 48, 145
FspBI	CTAG	1 cut(s)	856
GlaI	GCGC	1 cut(s)	816
GluI	GCNGC	4 cut(s)	19, 22, 48, 145
HaeIII	GGCC	1 cut(s)	586
HgaI	GACGC	1 cut(s)	90
HhaI	GCGC	1 cut(s)	817
Hin1I	GRCGYC	1 cut(s)	425
Hin1II	CATG	2 cut(s)	108, 399
Hin6I	GCGC	1 cut(s)	815
HinP1I	GCGC	1 cut(s)	815
HindIII	AAGCTT	1 cut(s)	205
HphI	GGTGA	2 cut(s)	33, 580
Hpy166II	GTNNAC	2 cut(s)	70, 531
Hpy188I	TCNGA	1 cut(s)	430
Hpy8I	GTNNAC	2 cut(s)	70, 531
HpyAV	CCTTC	2 cut(s)	463, 830
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	6 cut(s)	104, 108, 178, 211, 421, 640
HpyF10VI	GCNNNNNNNGC	3 cut(s)	27, 44, 208
HpyF3I	CTNAG	2 cut(s)	26, 287
HpySE526I	ACGT	1 cut(s)	425
Hsp92I	GRCGYC	1 cut(s)	425
Hsp92II	CATG	2 cut(s)	108, 399
HspAI	GCGC	1 cut(s)	815
KpnI	GGTACC	1 cut(s)	604
Ksp22I	TGATCA	1 cut(s)	259
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	1 cut(s)	503
Lsp1109I	GCAGC	3 cut(s)	5, 34, 156
MaeI	CTAG	1 cut(s)	856
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	4 cut(s)	264, 282, 337, 516
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	5 cut(s)	294, 374, 583, 586, 727
MhlI	GDGCHC	1 cut(s)	766
MluCI	AATT	2 cut(s)	331, 661
MnlI	CCTC	7 cut(s)	49, 61, 83, 245, 507, 597, 643
MseI	TTAA	1 cut(s)	239
MslI	CAYNNNNRTG	1 cut(s)	684
MspA1I	CMGCKG	2 cut(s)	47, 673
MspR9I	CCNGG	1 cut(s)	501
MvaI	CCWGG	1 cut(s)	501
MvnI	CGCG	1 cut(s)	728
MwoI	GCNNNNNNNGC	3 cut(s)	27, 44, 208
NdeII	GATC	1 cut(s)	259
NlaIII	CATG	2 cut(s)	108, 399
NlaIV	GGNNCC	1 cut(s)	602
NmuCI	GTSAC	2 cut(s)	264, 337
NspI	RCATGY	2 cut(s)	108, 399
PaeI	GCATGC	1 cut(s)	108
PaqCI	CACCTGC	1 cut(s)	814
PkrI	GCNGC	4 cut(s)	20, 23, 49, 146
Psp6I	CCWGG	1 cut(s)	499
PspEI	GGTNACC	1 cut(s)	516
PspGI	CCWGG	1 cut(s)	499
PspN4I	GGNNCC	1 cut(s)	602
RsaI	GTAC	3 cut(s)	124, 602, 731
RsaNI	GTAC	3 cut(s)	123, 601, 730
RseI	CAYNNNNRTG	1 cut(s)	684
SaqAI	TTAA	1 cut(s)	239
SatI	GCNGC	4 cut(s)	19, 22, 48, 145
Sau3AI	GATC	1 cut(s)	259
ScrFI	CCNGG	1 cut(s)	501
SduI	GDGCHC	1 cut(s)	766
SfcI	CTRYAG	1 cut(s)	192
SmiMI	CAYNNNNRTG	1 cut(s)	684
SmlI	CTYRAG	1 cut(s)	118
SmoI	CTYRAG	1 cut(s)	118
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	2 cut(s)	331, 661
SsiI	CCGC	3 cut(s)	22, 45, 671
SspMI	CTAG	1 cut(s)	856
StyD4I	CCNGG	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	12
TaiI	ACGT	1 cut(s)	428
TaqI	TCGA	2 cut(s)	656, 684
TasI	AATT	2 cut(s)	331, 661
TatI	WGTACW	1 cut(s)	122
TauI	GCSGC	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	239
Tru9I	TTAA	1 cut(s)	239
TscAI	CASTG	2 cut(s)	262, 285
TseFI	GTSAC	2 cut(s)	264, 337
TseI	GCWGC	3 cut(s)	18, 47, 144
Tsp45I	GTSAC	2 cut(s)	264, 337
TspDTI	ATGAA	1 cut(s)	727
TspGWI	ACGGA	1 cut(s)	325
TspRI	CASTG	2 cut(s)	262, 285
XceI	RCATGY	2 cut(s)	108, 399
XspI	CTAG	1 cut(s)	856
ZraI	GACGTC	1 cut(s)	426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.