Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Reverse (-)

1397404 .. 1398789

Gene Structure 1386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g01840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGGTAGAGTTACACTTTGAACCTCTAATCTGGCACAGAGATGTGAATCTAAAAAGACAGAACAAGCCCAACCGGGTTGCATGCAGATCTAACATCAATGCAGTGCCTATACTGTCAAGTAGCAGAAGTCTACAACAACCTAATCACAATCTGCATTCGTGGGCTCCGAAAGGATTGCCAAACTTGCAATTTTCTTTTACGTCATCGAGACTGTTGAGAGGGAATCAAGGCGATCAGTCACACAACATATCCATGTTGCCAAGACAACGGAAATCTTCAACATTGACACAAGCAAAGAAGAGTAACTCCATCAGTATACCTTTTCCGAAAATGAAAGAGAAGCCAGAATGGTGGTGGAGAACTTTAGCATGTCTCCCCTACTTAATCGCTCTGCAGATGTCTGATACCGGGTTTTATATTCAACCCTTCATGGAACACTATGAATTGTTTGGAGACTTGGTTTATTATGTCCCAGGAGCAATAAAGAGGTTGCCATATTGGTTCACAATGATATATTTCTTCCTGGCATATTTTGGAGTGGTGAAGAAAAAGGAGTGGCCTCACTTCTTTAGGTACCATGTAATCATGGCAATGCTATTAGAGACAATGCTGCAAGTGGTCTGGTATTCAAGCAATTTTTTCCCGCTTATACACTTCAATGGCACATTCGGCATAGAATACTGGGCAGTTGTGGCACTCGTGTACGTTTCAGTCATGCTCGAGTGTATAAGGTGTGCTCTTGCCGGCAAGTATGTTAAACTCCCATTCTTTAGTACTCCTGCTTTAGTCCATACTCTTTTTCAAGTAGAAGGCTACCATAAACCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

277

Amino Acids

32.45

Weight (kDa)

9.68

Isoelectric Point (pI)

52.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	87 - 260	8.7e-70	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	573
AccB1I	GGYRCC	1 cut(s)	573
AccI	GTMKAC	2 cut(s)	130, 316
AciI	CCGC	1 cut(s)	644
AfaI	GTAC	3 cut(s)	575, 704, 775
AgsI	TTSAA	6 cut(s)	20, 279, 422, 630, 658, 803
AjnI	CCWGG	2 cut(s)	472, 522
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	4 cut(s)	202, 377, 447, 596
Ama87I	CYCGRG	1 cut(s)	719
AoxI	GGCC	1 cut(s)	557
ApeKI	GCWGC	1 cut(s)	610
Asp718I	GGTACC	1 cut(s)	573
AsuC2I	CCSGG	2 cut(s)	74, 409
AsuHPI	GGTGA	1 cut(s)	553
AvaI	CYCGRG	1 cut(s)	719
BanI	GGYRCC	1 cut(s)	573
BanII	GRGCYC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	698
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	1 cut(s)	597
BccI	CCATC	1 cut(s)	317
BcgI	CGANNNNNNTGC	2 cut(s)	157, 191
BciT130I	CCWGG	2 cut(s)	474, 524
BcnI	CCSGG	2 cut(s)	74, 409
BcoDI	GTCTC	4 cut(s)	202, 377, 447, 596
BfmI	CTRYAG	1 cut(s)	392
BglII	AGATCT	1 cut(s)	86
BisI	GCNGC	1 cut(s)	611
BlsI	GCNGC	1 cut(s)	612
BmcAI	AGTACT	1 cut(s)	775
Bme1390I	CCNGG	4 cut(s)	74, 409, 474, 524
BmeT110I	CYCGRG	1 cut(s)	719
BmiI	GGNNCC	2 cut(s)	165, 575
BmrFI	CCNGG	4 cut(s)	74, 409, 474, 524
BmrI	ACTGGG	1 cut(s)	691
BmuI	ACTGGG	1 cut(s)	691
BpuMI	CCSGG	2 cut(s)	74, 409
BsaBI	GATNNNNATC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	472
BsaXI	ACNNNNNCTCC	2 cut(s)	444, 474
Bse118I	RCCGGY	1 cut(s)	743
Bse1I	ACTGG	1 cut(s)	686
Bse3DI	GCAATG	1 cut(s)	597
Bse8I	GATNNNNATC	1 cut(s)	45
BseBI	CCWGG	2 cut(s)	474, 524
BseDI	CCNNGG	1 cut(s)	472
BseJI	GATNNNNATC	1 cut(s)	45
BseMI	GCAATG	1 cut(s)	597
BseNI	ACTGG	1 cut(s)	686
BseXI	GCAGC	1 cut(s)	597
BshFI	GGCC	1 cut(s)	559
BshNI	GGYRCC	1 cut(s)	573
BsiHKAI	GWGCWC	1 cut(s)	739
BsiHKCI	CYCGRG	1 cut(s)	719
BsiSI	CCGG	3 cut(s)	73, 408, 744
BslFI	GGGAC	1 cut(s)	455
BsmAI	GTCTC	4 cut(s)	202, 377, 447, 596
BsmFI	GGGAC	1 cut(s)	455
BsmI	GAATGC	1 cut(s)	154
BsnI	GGCC	1 cut(s)	559
BsoBI	CYCGRG	1 cut(s)	719
Bsp1286I	GDGCHC	2 cut(s)	166, 739
Bsp143I	GATC	2 cut(s)	86, 232
BspACI	CCGC	1 cut(s)	644
BspANI	GGCC	1 cut(s)	559
BspLI	GGNNCC	2 cut(s)	165, 575
BspMAI	CTGCAG	1 cut(s)	396
BspT107I	GGYRCC	1 cut(s)	573
BsrDI	GCAATG	1 cut(s)	597
BsrFI	RCCGGY	1 cut(s)	743
BsrI	ACTGG	1 cut(s)	686
BssAI	RCCGGY	1 cut(s)	743
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	2 cut(s)	86, 232
BssNAI	GTATAC	1 cut(s)	317
BssSI	CACGAG	1 cut(s)	698
Bst1107I	GTATAC	1 cut(s)	317
Bst2BI	CACGAG	1 cut(s)	698
Bst2UI	CCWGG	2 cut(s)	474, 524
Bst4CI	ACNGT	2 cut(s)	114, 213
Bst6I	CTCTTC	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	82, 745
BstKTI	GATC	2 cut(s)	89, 235
BstMAI	GTCTC	4 cut(s)	202, 377, 447, 596
BstMBI	GATC	2 cut(s)	86, 232
BstMWI	GCNNNNNNNGC	3 cut(s)	184, 669, 692
BstNI	CCWGG	2 cut(s)	474, 524
BstNSI	RCATGY	2 cut(s)	84, 372
BstSCI	CCNGG	4 cut(s)	72, 407, 472, 522
BstSFI	CTRYAG	1 cut(s)	392
BstV1I	GCAGC	1 cut(s)	597
BstX2I	RGATCY	1 cut(s)	86
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	86
BstZ17I	GTATAC	1 cut(s)	317
BsuRI	GGCC	1 cut(s)	559
BtsI	GCAGTG	1 cut(s)	108
BtsIMutI	CAGTG	1 cut(s)	108
Cac8I	GCNNGC	2 cut(s)	82, 745
Cfr10I	RCCGGY	1 cut(s)	743
Csp6I	GTAC	3 cut(s)	574, 703, 774
CviAII	CATG	7 cut(s)	81, 253, 369, 430, 578, 586, 715
CviJI	RGCY	5 cut(s)	67, 164, 343, 559, 813
CviKI_1	RGCY	5 cut(s)	67, 164, 343, 559, 813
CviQI	GTAC	3 cut(s)	574, 703, 774
DpnI	GATC	2 cut(s)	88, 234
DpnII	GATC	2 cut(s)	86, 232
Eam1104I	CTCTTC	1 cut(s)	293
EarI	CTCTTC	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	719
EcoRII	CCWGG	2 cut(s)	472, 522
EcoT38I	GRGCYC	1 cut(s)	166
FaeI	CATG	7 cut(s)	84, 256, 372, 433, 581, 589, 718
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	7 cut(s)	80, 252, 368, 429, 577, 585, 714
FauI	CCCGC	1 cut(s)	651
FblI	GTMKAC	2 cut(s)	130, 316
Fnu4HI	GCNGC	1 cut(s)	611
FriOI	GRGCYC	1 cut(s)	166
Fsp4HI	GCNGC	1 cut(s)	611
GluI	GCNGC	1 cut(s)	611
HaeIII	GGCC	1 cut(s)	559
HapII	CCGG	3 cut(s)	73, 408, 744
Hin1II	CATG	7 cut(s)	84, 256, 372, 433, 581, 589, 718
HinfI	GANTC	2 cut(s)	46, 223
HpaII	CCGG	3 cut(s)	73, 408, 744
HphI	GGTGA	1 cut(s)	553
Hpy166II	GTNNAC	4 cut(s)	131, 317, 504, 703
Hpy188I	TCNGA	4 cut(s)	168, 327, 403, 830
Hpy188III	TCNNGA	1 cut(s)	207
Hpy8I	GTNNAC	4 cut(s)	131, 317, 504, 703
HpyAV	CCTTC	2 cut(s)	436, 803
HpyCH4III	ACNGT	2 cut(s)	114, 213
HpyCH4IV	ACGT	2 cut(s)	200, 705
HpyCH4V	TGCA	7 cut(s)	80, 84, 101, 154, 187, 394, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	184, 669, 692
HpySE526I	ACGT	2 cut(s)	200, 705
Hsp92II	CATG	7 cut(s)	84, 256, 372, 433, 581, 589, 718
KpnI	GGTACC	1 cut(s)	577
KroI	GCCGGC	1 cut(s)	743
KroNI	GCCGGC	1 cut(s)	745
Kzo9I	GATC	2 cut(s)	86, 232
LmnI	GCTCC	2 cut(s)	169, 476
Lsp1109I	GCAGC	1 cut(s)	597
MaeII	ACGT	2 cut(s)	200, 705
MaeIII	GTNAC	3 cut(s)	9, 237, 302
MalI	GATC	2 cut(s)	88, 234
MboI	GATC	2 cut(s)	86, 232
MboII	GAAGA	4 cut(s)	267, 310, 511, 556
MflI	RGATCY	1 cut(s)	86
MhlI	GDGCHC	2 cut(s)	166, 739
MluCI	AATT	3 cut(s)	188, 443, 634
MnlI	CCTC	4 cut(s)	33, 212, 480, 570
MroNI	GCCGGC	1 cut(s)	743
MseI	TTAA	2 cut(s)	383, 756
MslI	CAYNNNNRTG	4 cut(s)	39, 251, 590, 657
MspI	CCGG	3 cut(s)	73, 408, 744
MspR9I	CCNGG	4 cut(s)	74, 409, 474, 524
Mva1269I	GAATGC	1 cut(s)	154
MvaI	CCWGG	2 cut(s)	474, 524
MwoI	GCNNNNNNNGC	3 cut(s)	184, 669, 692
NaeI	GCCGGC	1 cut(s)	745
NciI	CCSGG	2 cut(s)	74, 409
NdeII	GATC	2 cut(s)	86, 232
NgoMIV	GCCGGC	1 cut(s)	743
NlaIII	CATG	7 cut(s)	84, 256, 372, 433, 581, 589, 718
NlaIV	GGNNCC	2 cut(s)	165, 575
NmuCI	GTSAC	1 cut(s)	237
NspI	RCATGY	2 cut(s)	84, 372
PaeI	GCATGC	1 cut(s)	84
PaeR7I	CTCGAG	1 cut(s)	719
PcsI	WCGNNNNNNNCGW	1 cut(s)	164
PctI	GAATGC	1 cut(s)	154
PdiI	GCCGGC	1 cut(s)	745
PfeI	GAWTC	2 cut(s)	46, 223
PkrI	GCNGC	1 cut(s)	612
Psp6I	CCWGG	2 cut(s)	472, 522
PspGI	CCWGG	2 cut(s)	472, 522
PspN4I	GGNNCC	2 cut(s)	165, 575
PspXI	VCTCGAGB	1 cut(s)	719
PstI	CTGCAG	1 cut(s)	396
PsuI	RGATCY	1 cut(s)	86
RsaI	GTAC	3 cut(s)	575, 704, 775
RsaNI	GTAC	3 cut(s)	574, 703, 774
RseI	CAYNNNNRTG	4 cut(s)	39, 251, 590, 657
SaqAI	TTAA	2 cut(s)	383, 756
SatI	GCNGC	1 cut(s)	611
Sau3AI	GATC	2 cut(s)	86, 232
ScaI	AGTACT	1 cut(s)	775
ScrFI	CCNGG	4 cut(s)	74, 409, 474, 524
SduI	GDGCHC	2 cut(s)	166, 739
SetI	ASST	9 cut(s)	25, 142, 203, 322, 491, 575, 708, 734, 826
SfcI	CTRYAG	1 cut(s)	392
Sfr274I	CTCGAG	1 cut(s)	719
SlaI	CTCGAG	1 cut(s)	719
SmiMI	CAYNNNNRTG	4 cut(s)	39, 251, 590, 657
SmlI	CTYRAG	1 cut(s)	719
SmoI	CTYRAG	1 cut(s)	719
SphI	GCATGC	1 cut(s)	84
Sse9I	AATT	3 cut(s)	188, 443, 634
SsiI	CCGC	1 cut(s)	644
StyD4I	CCNGG	4 cut(s)	72, 407, 472, 522
TaaI	ACNGT	2 cut(s)	114, 213
TaiI	ACGT	2 cut(s)	203, 708
TaqI	TCGA	2 cut(s)	206, 720
TasI	AATT	3 cut(s)	188, 443, 634
TatI	WGTACW	1 cut(s)	773
TfiI	GAWTC	2 cut(s)	46, 223
Tru1I	TTAA	2 cut(s)	383, 756
Tru9I	TTAA	2 cut(s)	383, 756
TscAI	CASTG	1 cut(s)	108
TseFI	GTSAC	1 cut(s)	237
TseI	GCWGC	1 cut(s)	610
Tsp45I	GTSAC	1 cut(s)	237
TspDTI	ATGAA	3 cut(s)	347, 418, 456
TspGWI	ACGGA	1 cut(s)	283
TspRI	CASTG	1 cut(s)	108
XceI	RCATGY	2 cut(s)	84, 372
XcmI	CCANNNNNNNNNTGG	1 cut(s)	351
XhoI	CTCGAG	1 cut(s)	719
XmiI	GTMKAC	2 cut(s)	130, 316
ZrmI	AGTACT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.