Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Forward (+)

74048266 .. 74051537

Gene Structure 3272 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021311

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGCAAAGAAAAGCCGACGGCGCCGAGTATTTCAGAAACCTCTACACATCCCCAGAACCAATGGCGACCGCCTTGAGCTGCGGCCAGACCATCTTCCTCGCTCCTCCTTCTCGCATCACCTCTCGGTACAAGGATGTGAATCTTAGACGGCTCACCAAGCCAAACAGGGTTGCATGCAACTTCACTCCAAAGTCACTGCCTATATTTTCAACCAGCAGACCACCTAATCAACTTCTGCCTGTACTGCCCAGAGTTTCAGGATTGCCAAGCTTGGACCTTTCTGCTGCATCATCCACAGTGCTAAGGAGGAATGATGAAGCTGGCCGGTCACAGAAAACATCCATCCTACTCAGACAACGCAAATCTTCAACATTGGTACAAGCAAAGAAGGATAATAGTTCAATCACTATACCTTTCCCGAAAATGACTGAGAAGCCAGAGTGGTGGTGGAGAACTTTAGCATGTCTCCCTTATTTAGCATCTTTGCAGATGTCCGAGGTTGGCTTTTATATTCAACCCTTTGCAGAACACTATCAACTTTTTGGAGATTTGATTTATTTTGTCCCCGGAGCAATAAAGAGGTTACCACAGTGGTTCACAATGACATATGTCATGGTGGCATATTTTGGAGTAGTGAAGAAGAAACAGTGGCCTCACTTCTTTAGGTACCATGTTATTATGGCCATGTTATTAGAAACGATGCTGCAAGTGGTAGCGCAGTCGAGCAATTTCTTTCCGCTTATACACTTCAATGGTACATTTGGCATAGAGTATTGGGCGGCTGTGGCATTCCTGTACATTTTGATCTTGTTGGAGTGCATAAGGTGTGCTCTTGCTGGCAAGTATGTTAAGCTCCCATTTTTCAGTACTCCTGCTCTAGCTCATACTCTTTTCACGACGAAGGCGAAGGAGTTCCAAAGCCTTTGTCGTGTCACCAGTGTCTCTTCAAAGCTGATGTGTAGTAACAACGTCGTTGGTGATGAAGAGTTTCGAGACCAAACAGCGCAGTTGTGCACCAACTCCAATCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

344

Amino Acids

39.11

Weight (kDa)

9.73

Isoelectric Point (pI)

52.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	118 - 291	2.5e-68	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	666
AccB1I	GGYRCC	2 cut(s)	20, 666
AciI	CCGC	4 cut(s)	69, 81, 737, 779
AcoI	YGGCCR	3 cut(s)	82, 322, 681
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	7 cut(s)	128, 243, 378, 668, 757, 797, 868
AgsI	TTSAA	6 cut(s)	210, 369, 402, 515, 751, 948
AluBI	AGCT	6 cut(s)	78, 270, 320, 853, 881, 952
AluI	AGCT	6 cut(s)	78, 270, 320, 853, 881, 952
Alw21I	GWGCWC	2 cut(s)	832, 1016
Alw26I	GTCTC	3 cut(s)	470, 946, 987
Alw44I	GTGCAC	1 cut(s)	1012
AoxI	GGCC	4 cut(s)	82, 322, 650, 681
ApaLI	GTGCAC	1 cut(s)	1012
ApeKI	GCWGC	3 cut(s)	78, 284, 703
ArsI	GACNNNNNNTTYG	2 cut(s)	910, 942
Asp700I	GAANNNNTTC	2 cut(s)	911, 987
Asp718I	GGTACC	1 cut(s)	666
AspLEI	GCGC	3 cut(s)	23, 718, 1006
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	4 cut(s)	109, 145, 925, 989
AvaII	GGWCC	1 cut(s)	274
BaeGI	GKGCMC	1 cut(s)	1016
BalI	TGGCCA	1 cut(s)	683
BanI	GGYRCC	2 cut(s)	20, 666
Bbv12I	GWGCWC	2 cut(s)	832, 1016
BbvI	GCAGC	3 cut(s)	65, 271, 690
BccI	CCATC	2 cut(s)	98, 350
BceAI	ACGGC	2 cut(s)	34, 164
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	3 cut(s)	470, 946, 987
BfaI	CTAG	1 cut(s)	878
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	5 cut(s)	79, 82, 285, 704, 780
BlsI	GCNGC	5 cut(s)	80, 83, 286, 705, 781
BmcAI	AGTACT	1 cut(s)	868
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	22, 668
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	4 cut(s)	123, 296, 488, 690
BoxI	GACNNNNGTC	1 cut(s)	608
Bpu10I	CCTNAGC	1 cut(s)	302
BpuEI	CTTGAG	1 cut(s)	94
BpuMI	CCSGG	1 cut(s)	567
Bsa29I	ATCGAT	1 cut(s)	1027
BsaBI	GATNNNNATC	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	1 cut(s)	987
BsaJI	CCNNGG	2 cut(s)	495, 565
Bse118I	RCCGGY	1 cut(s)	324
Bse1I	ACTGG	1 cut(s)	936
Bse8I	GATNNNNATC	1 cut(s)	138
BseCI	ATCGAT	1 cut(s)	1027
BseDI	CCNNGG	2 cut(s)	495, 565
BseGI	GGATG	5 cut(s)	47, 139, 290, 338, 342
BseJI	GATNNNNATC	1 cut(s)	138
BseMII	CTCAG	2 cut(s)	364, 420
BseNI	ACTGG	1 cut(s)	936
BseRI	GAGGAG	1 cut(s)	93
BseSI	GKGCMC	1 cut(s)	1016
BseXI	GCAGC	3 cut(s)	65, 271, 690
Bsh1285I	CGRYCG	1 cut(s)	69
BshFI	GGCC	4 cut(s)	84, 324, 652, 683
BshNI	GGYRCC	2 cut(s)	20, 666
BshVI	ATCGAT	1 cut(s)	1027
BsiEI	CGRYCG	1 cut(s)	69
BsiHKAI	GWGCWC	2 cut(s)	832, 1016
BsiSI	CCGG	2 cut(s)	325, 567
BslFI	GGGAC	1 cut(s)	548
BsmAI	GTCTC	3 cut(s)	470, 946, 987
BsmFI	GGGAC	1 cut(s)	548
BsmI	GAATGC	1 cut(s)	788
BsnI	GGCC	4 cut(s)	84, 324, 652, 683
Bso31I	GGTCTC	1 cut(s)	987
Bsp1286I	GDGCHC	2 cut(s)	832, 1016
Bsp1407I	TGTACA	1 cut(s)	795
Bsp143I	GATC	1 cut(s)	804
BspACI	CCGC	4 cut(s)	69, 81, 737, 779
BspANI	GGCC	4 cut(s)	84, 324, 652, 683
BspCNI	CTCAG	2 cut(s)	363, 421
BspDI	ATCGAT	1 cut(s)	1027
BspLI	GGNNCC	2 cut(s)	22, 668
BspT107I	GGYRCC	2 cut(s)	20, 666
BspTNI	GGTCTC	1 cut(s)	987
BsrFI	RCCGGY	1 cut(s)	324
BsrGI	TGTACA	1 cut(s)	795
BsrI	ACTGG	1 cut(s)	936
BssAI	RCCGGY	1 cut(s)	324
BssECI	CCNNGG	2 cut(s)	495, 565
BssMI	GATC	1 cut(s)	804
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	298, 591, 648
Bst6I	CTCTTC	2 cut(s)	949, 978
BstACI	GRCGYC	1 cut(s)	21
BstAUI	TGTACA	1 cut(s)	795
BstC8I	GCNNGC	3 cut(s)	175, 322, 838
BstDEI	CTNAG	4 cut(s)	143, 302, 350, 429
BstEII	GGTNACC	1 cut(s)	582
BstF5I	GGATG	5 cut(s)	47, 139, 290, 338, 342
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	3 cut(s)	23, 718, 1006
BstKTI	GATC	1 cut(s)	807
BstMAI	GTCTC	3 cut(s)	470, 946, 987
BstMBI	GATC	1 cut(s)	804
BstMCI	CGRYCG	1 cut(s)	69
BstMWI	GCNNNNNNNGC	4 cut(s)	20, 157, 244, 785
BstNSI	RCATGY	2 cut(s)	177, 465
BstPAI	GACNNNNGTC	1 cut(s)	608
BstPI	GGTNACC	1 cut(s)	582
BstSCI	CCNGG	1 cut(s)	565
BstSLI	GKGCMC	1 cut(s)	1016
BstV1I	GCAGC	3 cut(s)	65, 271, 690
BstXI	CCANNNNNNTGG	1 cut(s)	444
Bsu15I	ATCGAT	1 cut(s)	1027
BsuRI	GGCC	4 cut(s)	84, 324, 652, 683
BsuTUI	ATCGAT	1 cut(s)	1027
BtsCI	GGATG	5 cut(s)	47, 139, 290, 338, 342
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	5 cut(s)	194, 303, 596, 653, 943
Cac8I	GCNNGC	3 cut(s)	175, 322, 838
CfoI	GCGC	3 cut(s)	23, 718, 1006
Cfr10I	RCCGGY	1 cut(s)	324
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	1 cut(s)	1027
Csp6I	GTAC	7 cut(s)	127, 242, 377, 667, 756, 796, 867
CviAII	CATG	5 cut(s)	174, 462, 613, 671, 685
CviQI	GTAC	7 cut(s)	127, 242, 377, 667, 756, 796, 867
DdeI	CTNAG	4 cut(s)	143, 302, 350, 429
DinI	GGCGCC	1 cut(s)	22
DpnI	GATC	1 cut(s)	806
DpnII	GATC	1 cut(s)	804
EaeI	YGGCCR	3 cut(s)	82, 322, 681
Eam1104I	CTCTTC	2 cut(s)	949, 978
EarI	CTCTTC	2 cut(s)	949, 978
Eco31I	GGTCTC	1 cut(s)	987
Eco47I	GGWCC	1 cut(s)	274
Eco91I	GGTNACC	1 cut(s)	582
EcoO65I	GGTNACC	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	22
EheI	GGCGCC	1 cut(s)	22
FaeI	CATG	5 cut(s)	177, 465, 616, 674, 688
FaqI	GGGAC	1 cut(s)	548
FatI	CATG	5 cut(s)	173, 461, 612, 670, 684
FauNDI	CATATG	1 cut(s)	607
Fnu4HI	GCNGC	5 cut(s)	79, 82, 285, 704, 780
FokI	GGATG	5 cut(s)	34, 146, 277, 325, 329
Fsp4HI	GCNGC	5 cut(s)	79, 82, 285, 704, 780
FspBI	CTAG	1 cut(s)	878
GlaI	GCGC	3 cut(s)	22, 717, 1005
GluI	GCNGC	5 cut(s)	79, 82, 285, 704, 780
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	4 cut(s)	84, 324, 652, 683
HapII	CCGG	2 cut(s)	325, 567
HhaI	GCGC	3 cut(s)	23, 718, 1006
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	177, 465, 616, 674, 688
Hin6I	GCGC	3 cut(s)	21, 716, 1004
HinP1I	GCGC	3 cut(s)	21, 716, 1004
HindIII	AAGCTT	1 cut(s)	268
HinfI	GANTC	1 cut(s)	139
HpaII	CCGG	2 cut(s)	325, 567
HphI	GGTGA	4 cut(s)	109, 145, 925, 989
Hpy166II	GTNNAC	2 cut(s)	597, 1014
Hpy188I	TCNGA	3 cut(s)	35, 353, 496
Hpy188III	TCNNGA	4 cut(s)	258, 418, 895, 992
Hpy8I	GTNNAC	2 cut(s)	597, 1014
Hpy99I	CGWCG	3 cut(s)	20, 901, 974
HpyAV	CCTTC	4 cut(s)	117, 382, 895, 901
HpyCH4III	ACNGT	3 cut(s)	298, 591, 648
HpyCH4IV	ACGT	1 cut(s)	969
HpyCH4V	TGCA	9 cut(s)	4, 173, 177, 287, 487, 524, 706, 819, 1014
HpyF10VI	GCNNNNNNNGC	4 cut(s)	20, 157, 244, 785
HpyF3I	CTNAG	4 cut(s)	143, 302, 350, 429
HpySE526I	ACGT	1 cut(s)	969
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	5 cut(s)	177, 465, 616, 674, 688
HspAI	GCGC	3 cut(s)	21, 716, 1004
KasI	GGCGCC	1 cut(s)	20
KpnI	GGTACC	1 cut(s)	670
Kzo9I	GATC	1 cut(s)	804
LmnI	GCTCC	3 cut(s)	106, 569, 858
Lsp1109I	GCAGC	3 cut(s)	65, 271, 690
LweI	GCATC	4 cut(s)	123, 296, 488, 690
MaeI	CTAG	1 cut(s)	878
MaeII	ACGT	1 cut(s)	969
MaeIII	GTNAC	5 cut(s)	192, 327, 582, 931, 962
MalI	GATC	1 cut(s)	806
MboI	GATC	1 cut(s)	804
MboII	GAAGA	6 cut(s)	85, 357, 649, 652, 936, 995
MhlI	GDGCHC	2 cut(s)	832, 1016
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	1 cut(s)	727
MluNI	TGGCCA	1 cut(s)	683
Mly113I	GGCGCC	1 cut(s)	21
MmeI	TCCRAC	1 cut(s)	792
MnlI	CCTC	8 cut(s)	50, 107, 114, 130, 300, 490, 573, 663
Mox20I	TGGCCA	1 cut(s)	683
MroXI	GAANNNNTTC	2 cut(s)	911, 987
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	1 cut(s)	849
MslI	CAYNNNNRTG	1 cut(s)	750
Msp20I	TGGCCA	1 cut(s)	683
MspI	CCGG	2 cut(s)	325, 567
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	788
MwoI	GCNNNNNNNGC	4 cut(s)	20, 157, 244, 785
NarI	GGCGCC	1 cut(s)	21
NciI	CCSGG	1 cut(s)	567
NdeI	CATATG	1 cut(s)	607
NdeII	GATC	1 cut(s)	804
NlaIII	CATG	5 cut(s)	177, 465, 616, 674, 688
NlaIV	GGNNCC	2 cut(s)	22, 668
NmeAIII	GCCGAG	1 cut(s)	49
NmuCI	GTSAC	3 cut(s)	192, 327, 931
NspI	RCATGY	2 cut(s)	177, 465
PaeI	GCATGC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	902
PctI	GAATGC	1 cut(s)	788
PdmI	GAANNNNTTC	2 cut(s)	911, 987
PfeI	GAWTC	1 cut(s)	139
PkrI	GCNGC	5 cut(s)	80, 83, 286, 705, 781
PluTI	GGCGCC	1 cut(s)	24
PshAI	GACNNNNGTC	1 cut(s)	608
PspEI	GGTNACC	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	22, 668
PspPI	GGNCC	1 cut(s)	274
RsaI	GTAC	7 cut(s)	128, 243, 378, 668, 757, 797, 868
RsaNI	GTAC	7 cut(s)	127, 242, 377, 667, 756, 796, 867
RseI	CAYNNNNRTG	1 cut(s)	750
SaqAI	TTAA	1 cut(s)	849
SatI	GCNGC	5 cut(s)	79, 82, 285, 704, 780
Sau3AI	GATC	1 cut(s)	804
Sau96I	GGNCC	1 cut(s)	274
ScaI	AGTACT	1 cut(s)	868
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	2 cut(s)	832, 1016
SfaNI	GCATC	4 cut(s)	123, 296, 488, 690
SfoI	GGCGCC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	274
SmiMI	CAYNNNNRTG	1 cut(s)	750
SmlI	CTYRAG	1 cut(s)	73
SmoI	CTYRAG	1 cut(s)	73
SphI	GCATGC	1 cut(s)	177
Sse9I	AATT	1 cut(s)	727
SsiI	CCGC	4 cut(s)	69, 81, 737, 779
SspDI	GGCGCC	1 cut(s)	20
SspMI	CTAG	1 cut(s)	878
StyD4I	CCNGG	1 cut(s)	565
TaaI	ACNGT	3 cut(s)	298, 591, 648
TaiI	ACGT	1 cut(s)	972
TaqI	TCGA	3 cut(s)	722, 991, 1027
TasI	AATT	1 cut(s)	727
TatI	WGTACW	3 cut(s)	241, 795, 866
TauI	GCSGC	2 cut(s)	84, 782
TfiI	GAWTC	1 cut(s)	139
Tru1I	TTAA	1 cut(s)	849
Tru9I	TTAA	1 cut(s)	849
TscAI	CASTG	5 cut(s)	201, 303, 596, 653, 943
TseFI	GTSAC	3 cut(s)	192, 327, 931
TseI	GCWGC	3 cut(s)	78, 284, 703
Tsp45I	GTSAC	3 cut(s)	192, 327, 931
TspDTI	ATGAA	2 cut(s)	330, 996
TspRI	CASTG	5 cut(s)	201, 303, 596, 653, 943
VneI	GTGCAC	1 cut(s)	1012
VpaK11BI	GGWCC	1 cut(s)	274
XceI	RCATGY	2 cut(s)	177, 465
XcmI	CCANNNNNNNNNTGG	1 cut(s)	444
XmnI	GAANNNNTTC	2 cut(s)	911, 987
XspI	CTAG	1 cut(s)	878
ZrmI	AGTACT	1 cut(s)	868

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.