Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Reverse (-)

6814270 .. 6816842

Gene Structure 2573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1093200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGCGACCGCCTTGGGCTGCCGTCTCAGCGTTCTTGCCTCCCCGGCTGCGTCCCGGTACAAGGATGTGAATCTAAAAAGACAGAACAAGCCCAACCGGGTTGCATGCAGATCTAACTTCAATGCAGTGCCTATACTGTCAAGTAGCAGGAGTATACAACAACCTAACCACAATCTGCATTCCTGGGCCCCGAAAGGATTGCCAAACTTGCACCTTTCTTTTACGTCATCGAGACTGTTAAGAGGGAATCAAGGCGATCAGTCACACAACATATCCATGTTACCAAGACAACGGAAATCTTCAACATTGACACAAGCAAAGAAGAGCAACTCCATCAGTATACCTTTTCCGAAAATGAAAGAGAAGCCAGAATGGTGGTGGAGAACTTTAGCATGTCTCCCCTACTTAATCGCTCTGCAGATGTCTGATACCGGGTTTTATATTCAACCCTTCACAGAACACTATGAATTGTTTGGAGACTTGGTTTATTATGTCCCAGGAGCAATAAAGAGGTTGCCATATTGGTTCACAATGATATATTTCTTCTTGGCGTATTTTGGAGTGGTGAAGAAAAAAGAGTGGCCTCACTTCTTCAGGTACCATGTAATCATGGCAATGCTATTAGAGACAATGCTGCAAGTGGTCTGGTATTCGAGCAATTTTTTCCCGCTTATACACTTCAATGGCACATTCGGCATAGAATACTGGGCAGTTGTGGCACTCGTGTACGTTTCAGTCATGCTCGAGTGTGTAAGGTGTGCTCTTGCCGGCAAGTATGTTAAACTCCCATTCTTCAGTACCCCTGCTTTAGTCCATACTCTTTTTCAAGTAGAAGGCTACCATAAACCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

285

Amino Acids

32.88

Weight (kDa)

9.81

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	95 - 268	3.5e-69	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	597
AccB1I	GGYRCC	1 cut(s)	597
AccI	GTMKAC	2 cut(s)	154, 340
AciI	CCGC	2 cut(s)	9, 668
AcuI	CTGAAG	2 cut(s)	577, 778
AfaI	GTAC	4 cut(s)	59, 599, 728, 799
AfiI	CCNNNNNNNGG	1 cut(s)	61
AgsI	TTSAA	5 cut(s)	121, 303, 446, 682, 827
AjnI	CCWGG	2 cut(s)	182, 496
Alw21I	GWGCWC	1 cut(s)	763
Alw26I	GTCTC	5 cut(s)	29, 226, 401, 471, 620
Ama87I	CYCGRG	1 cut(s)	743
AoxI	GGCC	2 cut(s)	186, 581
ApaI	GGGCCC	1 cut(s)	190
ApeKI	GCWGC	3 cut(s)	18, 47, 634
Asp718I	GGTACC	1 cut(s)	597
AspS9I	GGNCC	2 cut(s)	186, 187
AsuC2I	CCSGG	4 cut(s)	44, 55, 98, 433
AsuHPI	GGTGA	1 cut(s)	577
AvaI	CYCGRG	1 cut(s)	743
BaeGI	GKGCMC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	597
BanII	GRGCYC	1 cut(s)	190
BauI	CACGAG	1 cut(s)	722
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	3 cut(s)	5, 34, 621
BccI	CCATC	1 cut(s)	341
BceAI	ACGGC	1 cut(s)	6
BcgI	CGANNNNNNTGC	2 cut(s)	181, 215
BciT130I	CCWGG	2 cut(s)	184, 498
BcnI	CCSGG	4 cut(s)	44, 55, 98, 433
BcoDI	GTCTC	5 cut(s)	29, 226, 401, 471, 620
BfmI	CTRYAG	1 cut(s)	416
BglI	GCCNNNNNGGC	1 cut(s)	44
BglII	AGATCT	1 cut(s)	110
BisI	GCNGC	3 cut(s)	19, 48, 635
BlsI	GCNGC	3 cut(s)	20, 49, 636
Bme1390I	CCNGG	6 cut(s)	44, 55, 98, 184, 433, 498
BmeT110I	CYCGRG	1 cut(s)	743
BmgT120I	GGNCC	2 cut(s)	186, 187
BmiI	GGNNCC	3 cut(s)	188, 189, 599
BmrFI	CCNGG	6 cut(s)	44, 55, 98, 184, 433, 498
BmrI	ACTGGG	1 cut(s)	715
BmuI	ACTGGG	1 cut(s)	715
BpuMI	CCSGG	4 cut(s)	44, 55, 98, 433
BsaBI	GATNNNNATC	1 cut(s)	69
BsaJI	CCNNGG	4 cut(s)	12, 42, 183, 496
BsaXI	ACNNNNNCTCC	2 cut(s)	468, 498
Bsc4I	CCNNNNNNNGG	1 cut(s)	61
Bse118I	RCCGGY	1 cut(s)	767
Bse1I	ACTGG	1 cut(s)	710
Bse3DI	GCAATG	1 cut(s)	621
Bse8I	GATNNNNATC	1 cut(s)	69
BseBI	CCWGG	2 cut(s)	184, 498
BseDI	CCNNGG	4 cut(s)	12, 42, 183, 496
BseGI	GGATG	1 cut(s)	70
BseJI	GATNNNNATC	1 cut(s)	69
BseLI	CCNNNNNNNGG	1 cut(s)	61
BseMI	GCAATG	1 cut(s)	621
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	710
BseSI	GKGCMC	1 cut(s)	190
BseXI	GCAGC	3 cut(s)	5, 34, 621
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	2 cut(s)	188, 583
BshNI	GGYRCC	1 cut(s)	597
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	763
BsiHKCI	CYCGRG	1 cut(s)	743
BsiSI	CCGG	5 cut(s)	44, 55, 97, 432, 768
BslFI	GGGAC	2 cut(s)	37, 479
BslI	CCNNNNNNNGG	1 cut(s)	61
BsmAI	GTCTC	5 cut(s)	29, 226, 401, 471, 620
BsmBI	CGTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	37, 479
BsmI	GAATGC	1 cut(s)	178
BsnI	GGCC	2 cut(s)	188, 583
BsoBI	CYCGRG	1 cut(s)	743
Bsp120I	GGGCCC	1 cut(s)	186
Bsp1286I	GDGCHC	2 cut(s)	190, 763
Bsp143I	GATC	2 cut(s)	110, 256
BspACI	CCGC	2 cut(s)	9, 668
BspANI	GGCC	2 cut(s)	188, 583
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	188, 189, 599
BspMAI	CTGCAG	1 cut(s)	420
BspQI	GCTCTTC	1 cut(s)	317
BspT107I	GGYRCC	1 cut(s)	597
BsrDI	GCAATG	1 cut(s)	621
BsrFI	RCCGGY	1 cut(s)	767
BsrI	ACTGG	1 cut(s)	710
BssAI	RCCGGY	1 cut(s)	767
BssECI	CCNNGG	4 cut(s)	12, 42, 183, 496
BssMI	GATC	2 cut(s)	110, 256
BssNAI	GTATAC	2 cut(s)	155, 341
BssSI	CACGAG	1 cut(s)	722
BssT1I	CCWWGG	1 cut(s)	12
Bst1107I	GTATAC	2 cut(s)	155, 341
Bst2BI	CACGAG	1 cut(s)	722
Bst2UI	CCWGG	2 cut(s)	184, 498
Bst4CI	ACNGT	2 cut(s)	138, 237
Bst6I	CTCTTC	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	106, 769
BstDEI	CTNAG	1 cut(s)	26
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	2 cut(s)	113, 259
BstMAI	GTCTC	5 cut(s)	29, 226, 401, 471, 620
BstMBI	GATC	2 cut(s)	110, 256
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 44, 208, 693, 716
BstNI	CCWGG	2 cut(s)	184, 498
BstNSI	RCATGY	2 cut(s)	108, 396
BstSCI	CCNGG	6 cut(s)	42, 53, 96, 182, 431, 496
BstSFI	CTRYAG	1 cut(s)	416
BstSLI	GKGCMC	1 cut(s)	190
BstV1I	GCAGC	3 cut(s)	5, 34, 621
BstX2I	RGATCY	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	375
BstYI	RGATCY	1 cut(s)	110
BstZ17I	GTATAC	2 cut(s)	155, 341
BsuRI	GGCC	2 cut(s)	188, 583
BtsCI	GGATG	1 cut(s)	70
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	106, 769
Cfr10I	RCCGGY	1 cut(s)	767
Cfr13I	GGNCC	2 cut(s)	186, 187
CseI	GACGC	1 cut(s)	39
Csp6I	GTAC	4 cut(s)	58, 598, 727, 798
CviAII	CATG	6 cut(s)	105, 277, 393, 602, 610, 739
CviJI	RGCY	7 cut(s)	18, 47, 91, 188, 367, 583, 837
CviKI_1	RGCY	7 cut(s)	18, 47, 91, 188, 367, 583, 837
CviQI	GTAC	4 cut(s)	58, 598, 727, 798
DdeI	CTNAG	1 cut(s)	26
DpnI	GATC	2 cut(s)	112, 258
DpnII	GATC	2 cut(s)	110, 256
Eam1104I	CTCTTC	1 cut(s)	317
EarI	CTCTTC	1 cut(s)	317
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	190
Eco57I	CTGAAG	2 cut(s)	577, 778
Eco88I	CYCGRG	1 cut(s)	743
EcoO109I	RGGNCCY	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	182, 496
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	1 cut(s)	12
Esp3I	CGTCTC	1 cut(s)	29
FaeI	CATG	6 cut(s)	108, 280, 396, 605, 613, 742
FaqI	GGGAC	2 cut(s)	37, 479
FatI	CATG	6 cut(s)	104, 276, 392, 601, 609, 738
FauI	CCCGC	1 cut(s)	675
FblI	GTMKAC	2 cut(s)	154, 340
Fnu4HI	GCNGC	3 cut(s)	19, 48, 635
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	190
Fsp4HI	GCNGC	3 cut(s)	19, 48, 635
GluI	GCNGC	3 cut(s)	19, 48, 635
HaeIII	GGCC	2 cut(s)	188, 583
HapII	CCGG	5 cut(s)	44, 55, 97, 432, 768
HgaI	GACGC	1 cut(s)	39
Hin1II	CATG	6 cut(s)	108, 280, 396, 605, 613, 742
HinfI	GANTC	2 cut(s)	70, 247
HpaII	CCGG	5 cut(s)	44, 55, 97, 432, 768
HphI	GGTGA	1 cut(s)	577
Hpy166II	GTNNAC	4 cut(s)	155, 341, 528, 727
Hpy188I	TCNGA	3 cut(s)	351, 427, 854
Hpy188III	TCNNGA	1 cut(s)	231
Hpy8I	GTNNAC	4 cut(s)	155, 341, 528, 727
HpyAV	CCTTC	2 cut(s)	460, 827
HpyCH4III	ACNGT	2 cut(s)	138, 237
HpyCH4IV	ACGT	2 cut(s)	224, 729
HpyCH4V	TGCA	7 cut(s)	104, 108, 125, 178, 211, 418, 637
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 44, 208, 693, 716
HpyF3I	CTNAG	1 cut(s)	26
HpySE526I	ACGT	2 cut(s)	224, 729
Hsp92II	CATG	6 cut(s)	108, 280, 396, 605, 613, 742
KpnI	GGTACC	1 cut(s)	601
KroI	GCCGGC	1 cut(s)	767
KroNI	GCCGGC	1 cut(s)	769
Kzo9I	GATC	2 cut(s)	110, 256
LguI	GCTCTTC	1 cut(s)	317
LmnI	GCTCC	1 cut(s)	500
Lsp1109I	GCAGC	3 cut(s)	5, 34, 621
MaeII	ACGT	2 cut(s)	224, 729
MaeIII	GTNAC	2 cut(s)	261, 279
MalI	GATC	2 cut(s)	112, 258
MboI	GATC	2 cut(s)	110, 256
MboII	GAAGA	6 cut(s)	291, 334, 535, 580, 583, 784
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	2 cut(s)	190, 763
MluCI	AATT	2 cut(s)	467, 658
MnlI	CCTC	4 cut(s)	49, 236, 504, 594
MroNI	GCCGGC	1 cut(s)	767
MseI	TTAA	3 cut(s)	239, 407, 780
MslI	CAYNNNNRTG	3 cut(s)	275, 614, 681
MspI	CCGG	5 cut(s)	44, 55, 97, 432, 768
MspR9I	CCNGG	6 cut(s)	44, 55, 98, 184, 433, 498
Mva1269I	GAATGC	1 cut(s)	178
MvaI	CCWGG	2 cut(s)	184, 498
MwoI	GCNNNNNNNGC	5 cut(s)	27, 44, 208, 693, 716
NaeI	GCCGGC	1 cut(s)	769
NciI	CCSGG	4 cut(s)	44, 55, 98, 433
NdeII	GATC	2 cut(s)	110, 256
NgoMIV	GCCGGC	1 cut(s)	767
NlaIII	CATG	6 cut(s)	108, 280, 396, 605, 613, 742
NlaIV	GGNNCC	3 cut(s)	188, 189, 599
NmuCI	GTSAC	1 cut(s)	261
NspI	RCATGY	2 cut(s)	108, 396
PaeI	GCATGC	1 cut(s)	108
PaeR7I	CTCGAG	1 cut(s)	743
PciSI	GCTCTTC	1 cut(s)	317
PctI	GAATGC	1 cut(s)	178
PdiI	GCCGGC	1 cut(s)	769
PfeI	GAWTC	2 cut(s)	70, 247
PkrI	GCNGC	3 cut(s)	20, 49, 636
Psp6I	CCWGG	2 cut(s)	182, 496
PspGI	CCWGG	2 cut(s)	182, 496
PspN4I	GGNNCC	3 cut(s)	188, 189, 599
PspOMI	GGGCCC	1 cut(s)	186
PspPI	GGNCC	2 cut(s)	186, 187
PspXI	VCTCGAGB	1 cut(s)	743
PstI	CTGCAG	1 cut(s)	420
PsuI	RGATCY	1 cut(s)	110
RsaI	GTAC	4 cut(s)	59, 599, 728, 799
RsaNI	GTAC	4 cut(s)	58, 598, 727, 798
RseI	CAYNNNNRTG	3 cut(s)	275, 614, 681
SapI	GCTCTTC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	239, 407, 780
SatI	GCNGC	3 cut(s)	19, 48, 635
Sau3AI	GATC	2 cut(s)	110, 256
Sau96I	GGNCC	2 cut(s)	186, 187
ScrFI	CCNGG	6 cut(s)	44, 55, 98, 184, 433, 498
SduI	GDGCHC	2 cut(s)	190, 763
SetI	ASST	9 cut(s)	166, 216, 227, 346, 515, 599, 732, 758, 850
SfcI	CTRYAG	1 cut(s)	416
Sfr274I	CTCGAG	1 cut(s)	743
SlaI	CTCGAG	1 cut(s)	743
SmiMI	CAYNNNNRTG	3 cut(s)	275, 614, 681
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
SphI	GCATGC	1 cut(s)	108
Sse9I	AATT	2 cut(s)	467, 658
SsiI	CCGC	2 cut(s)	9, 668
StyD4I	CCNGG	6 cut(s)	42, 53, 96, 182, 431, 496
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	2 cut(s)	138, 237
TaiI	ACGT	2 cut(s)	227, 732
TaqI	TCGA	3 cut(s)	230, 653, 744
TasI	AATT	2 cut(s)	467, 658
TfiI	GAWTC	2 cut(s)	70, 247
Tru1I	TTAA	3 cut(s)	239, 407, 780
Tru9I	TTAA	3 cut(s)	239, 407, 780
TscAI	CASTG	1 cut(s)	132
TseFI	GTSAC	1 cut(s)	261
TseI	GCWGC	3 cut(s)	18, 47, 634
Tsp45I	GTSAC	1 cut(s)	261
TspDTI	ATGAA	2 cut(s)	371, 480
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	1 cut(s)	132
XceI	RCATGY	2 cut(s)	108, 396
XcmI	CCANNNNNNNNNTGG	1 cut(s)	375
XhoI	CTCGAG	1 cut(s)	743
XmiI	GTMKAC	2 cut(s)	154, 340

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.