Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Reverse (-)

10367964 .. 10370779

Gene Structure 2816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00088440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

ATGGCGACCGCCTTGAGCTGCGGCCAGACCATCTTTCTCGCTCCTCCTTCTCGTATCACCTCTCGGTACAGGGATGTGAATCTTAGACGACTCACCAAGCCAAACAGGGTTGCATGCAACTTCACTCCAAAGTCACTGCCTATATTTTCAACCAGCAGACCACCTAATCAACTTCTGCCTGTACTGCCCAGAGTTTCAGGATTGCCAAGCTTGGACCTTTCTGCTGCATCATCCACAGTGCTAAGGGGGAACGAAGCTGGCCGGTCACAGAAAACATCCATCCTACTCAGACAACGCAAATCTTCAACATTGGTACAAGCAAAGAAGGATAATAGTTCAATCACTATACCTTTCCCGAAAATGACTGAGAAGCCAGAGTGGTGGTGGAGAACTTTAGCATGTCTCCCTTATTTAGCATCTTTGCAGATGTCCGAGGTTGGCTTTTTTATTCAACCCTTTGCAGAACACTATCAACTTTTTGGAGATTTGATTTATTTTGTCCCCGGAGCAATAAAGAGGTTACCACAGTGGTTCACAATGACATATGTCATGGTGGCATATTTTGGAGTGGTGAAGAAGAAACAGTGGCCTCACTTCTTTAGGTACCATGTTATTATGGCCATGTTATTAGAAACGATGCTGCAAGTGGTAGCGCAGTCGAGCAATTTCTTTCCGCTTATACACTTCAATGGTACATTTGGCATAGAGTATTGGGCGGCTGTGGCATTCCTGTACATTTTGATCTTGTTGGAGTGCATAAGGTGTGCTCTTGCTGGCAAGTATGTCAAGCTCCCGTTTTTCAGTACTCCTGCTCTAGCTCATACTCTTTTCACCGTAGAAGGCAGGTACAGACCTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

286

Amino Acids

32.65

Weight (kDa)

10.05

Isoelectric Point (pI)

51.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	97 - 270	2.5e-68	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	834
Acc65I	GGTACC	1 cut(s)	603
AccB1I	GGYRCC	1 cut(s)	603
AciI	CCGC	4 cut(s)	9, 21, 674, 716
AcoI	YGGCCR	3 cut(s)	22, 259, 618
AfaI	GTAC	8 cut(s)	68, 183, 315, 605, 694, 734, 805, 848
AgsI	TTSAA	5 cut(s)	150, 306, 339, 452, 688
AluBI	AGCT	5 cut(s)	18, 210, 257, 790, 818
AluI	AGCT	5 cut(s)	18, 210, 257, 790, 818
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	1 cut(s)	407
AoxI	GGCC	4 cut(s)	22, 259, 587, 618
ApeKI	GCWGC	3 cut(s)	18, 224, 640
Asp718I	GGTACC	1 cut(s)	603
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	214
AsuC2I	CCSGG	1 cut(s)	504
AsuHPI	GGTGA	4 cut(s)	49, 85, 583, 823
AvaII	GGWCC	1 cut(s)	214
BalI	TGGCCA	1 cut(s)	620
BanI	GGYRCC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	3 cut(s)	5, 211, 627
BccI	CCATC	2 cut(s)	38, 287
BcnI	CCSGG	1 cut(s)	504
BcoDI	GTCTC	1 cut(s)	407
BfaI	CTAG	1 cut(s)	815
BfuAI	ACCTGC	1 cut(s)	834
BisI	GCNGC	5 cut(s)	19, 22, 225, 641, 717
BlsI	GCNGC	5 cut(s)	20, 23, 226, 642, 718
BmcAI	AGTACT	1 cut(s)	805
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	214
BmiI	GGNNCC	1 cut(s)	605
BmrFI	CCNGG	1 cut(s)	504
BmsI	GCATC	3 cut(s)	236, 425, 627
BoxI	GACNNNNGTC	1 cut(s)	545
Bpu10I	CCTNAGC	1 cut(s)	242
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	504
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	432, 502
Bse118I	RCCGGY	1 cut(s)	261
Bse8I	GATNNNNATC	1 cut(s)	78
BseDI	CCNNGG	2 cut(s)	432, 502
BseGI	GGATG	4 cut(s)	79, 230, 275, 279
BseJI	GATNNNNATC	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	301, 357
BseRI	GAGGAG	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	5, 211, 627
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	4 cut(s)	24, 261, 589, 620
BshNI	GGYRCC	1 cut(s)	603
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	1 cut(s)	769
BsiSI	CCGG	2 cut(s)	262, 504
BslFI	GGGAC	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	407
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	725
BsnI	GGCC	4 cut(s)	24, 261, 589, 620
Bsp1286I	GDGCHC	1 cut(s)	769
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	1 cut(s)	741
BspACI	CCGC	4 cut(s)	9, 21, 674, 716
BspANI	GGCC	4 cut(s)	24, 261, 589, 620
BspCNI	CTCAG	2 cut(s)	300, 358
BspLI	GGNNCC	1 cut(s)	605
BspMI	ACCTGC	1 cut(s)	834
BspT107I	GGYRCC	1 cut(s)	603
BsrFI	RCCGGY	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	732
BssAI	RCCGGY	1 cut(s)	261
BssECI	CCNNGG	2 cut(s)	432, 502
BssMI	GATC	1 cut(s)	741
Bst4CI	ACNGT	4 cut(s)	238, 528, 585, 835
BstAUI	TGTACA	1 cut(s)	732
BstC8I	GCNNGC	3 cut(s)	115, 259, 775
BstDEI	CTNAG	4 cut(s)	83, 242, 287, 366
BstEII	GGTNACC	1 cut(s)	519
BstF5I	GGATG	4 cut(s)	79, 230, 275, 279
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	1 cut(s)	744
BstMAI	GTCTC	1 cut(s)	407
BstMBI	GATC	1 cut(s)	741
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 722
BstNSI	RCATGY	2 cut(s)	117, 402
BstPAI	GACNNNNGTC	1 cut(s)	545
BstPI	GGTNACC	1 cut(s)	519
BstSCI	CCNGG	1 cut(s)	502
BstV1I	GCAGC	3 cut(s)	5, 211, 627
BstXI	CCANNNNNNTGG	1 cut(s)	381
BsuRI	GGCC	4 cut(s)	24, 261, 589, 620
BtsCI	GGATG	4 cut(s)	79, 230, 275, 279
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	4 cut(s)	134, 243, 533, 590
BveI	ACCTGC	1 cut(s)	834
Cac8I	GCNNGC	3 cut(s)	115, 259, 775
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	261
Cfr13I	GGNCC	1 cut(s)	214
Csp6I	GTAC	8 cut(s)	67, 182, 314, 604, 693, 733, 804, 847
CviAII	CATG	5 cut(s)	114, 399, 550, 608, 622
CviQI	GTAC	8 cut(s)	67, 182, 314, 604, 693, 733, 804, 847
DdeI	CTNAG	4 cut(s)	83, 242, 287, 366
DpnI	GATC	1 cut(s)	743
DpnII	GATC	1 cut(s)	741
EaeI	YGGCCR	3 cut(s)	22, 259, 618
Eco47I	GGWCC	1 cut(s)	214
Eco91I	GGTNACC	1 cut(s)	519
EcoO65I	GGTNACC	1 cut(s)	519
FaeI	CATG	5 cut(s)	117, 402, 553, 611, 625
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	5 cut(s)	113, 398, 549, 607, 621
FauNDI	CATATG	1 cut(s)	544
Fnu4HI	GCNGC	5 cut(s)	19, 22, 225, 641, 717
FokI	GGATG	4 cut(s)	86, 217, 262, 266
Fsp4HI	GCNGC	5 cut(s)	19, 22, 225, 641, 717
FspBI	CTAG	1 cut(s)	815
GlaI	GCGC	1 cut(s)	654
GluI	GCNGC	5 cut(s)	19, 22, 225, 641, 717
HaeIII	GGCC	4 cut(s)	24, 261, 589, 620
HapII	CCGG	2 cut(s)	262, 504
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	5 cut(s)	117, 402, 553, 611, 625
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HindIII	AAGCTT	1 cut(s)	208
HinfI	GANTC	2 cut(s)	79, 90
HpaII	CCGG	2 cut(s)	262, 504
HphI	GGTGA	4 cut(s)	49, 85, 583, 823
Hpy166II	GTNNAC	1 cut(s)	534
Hpy188I	TCNGA	2 cut(s)	290, 433
Hpy188III	TCNNGA	2 cut(s)	198, 355
Hpy8I	GTNNAC	1 cut(s)	534
HpyAV	CCTTC	3 cut(s)	57, 319, 833
HpyCH4III	ACNGT	4 cut(s)	238, 528, 585, 835
HpyCH4V	TGCA	7 cut(s)	113, 117, 227, 424, 461, 643, 756
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 722
HpyF3I	CTNAG	4 cut(s)	83, 242, 287, 366
Hsp92II	CATG	5 cut(s)	117, 402, 553, 611, 625
HspAI	GCGC	1 cut(s)	653
KpnI	GGTACC	1 cut(s)	607
Kzo9I	GATC	1 cut(s)	741
LmnI	GCTCC	3 cut(s)	46, 506, 795
Lsp1109I	GCAGC	3 cut(s)	5, 211, 627
LweI	GCATC	3 cut(s)	236, 425, 627
MaeI	CTAG	1 cut(s)	815
MaeIII	GTNAC	3 cut(s)	132, 264, 519
MalI	GATC	1 cut(s)	743
MboI	GATC	1 cut(s)	741
MboII	GAAGA	3 cut(s)	294, 586, 589
MhlI	GDGCHC	1 cut(s)	769
MlsI	TGGCCA	1 cut(s)	620
MluCI	AATT	1 cut(s)	664
MluNI	TGGCCA	1 cut(s)	620
MlyI	GAGTC	1 cut(s)	84
MmeI	TCCRAC	1 cut(s)	729
MnlI	CCTC	5 cut(s)	54, 70, 427, 510, 600
Mox20I	TGGCCA	1 cut(s)	620
MscI	TGGCCA	1 cut(s)	620
MseI	TTAA	1 cut(s)	859
MslI	CAYNNNNRTG	1 cut(s)	687
Msp20I	TGGCCA	1 cut(s)	620
MspI	CCGG	2 cut(s)	262, 504
MspR9I	CCNGG	1 cut(s)	504
Mva1269I	GAATGC	1 cut(s)	725
MwoI	GCNNNNNNNGC	2 cut(s)	184, 722
NciI	CCSGG	1 cut(s)	504
NdeI	CATATG	1 cut(s)	544
NdeII	GATC	1 cut(s)	741
NlaIII	CATG	5 cut(s)	117, 402, 553, 611, 625
NlaIV	GGNNCC	1 cut(s)	605
NmuCI	GTSAC	2 cut(s)	132, 264
NspI	RCATGY	2 cut(s)	117, 402
PaeI	GCATGC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	725
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	5 cut(s)	20, 23, 226, 642, 718
PleI	GAGTC	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	84
PshAI	GACNNNNGTC	1 cut(s)	545
PspEI	GGTNACC	1 cut(s)	519
PspN4I	GGNNCC	1 cut(s)	605
PspPI	GGNCC	1 cut(s)	214
RsaI	GTAC	8 cut(s)	68, 183, 315, 605, 694, 734, 805, 848
RsaNI	GTAC	8 cut(s)	67, 182, 314, 604, 693, 733, 804, 847
RseI	CAYNNNNRTG	1 cut(s)	687
SaqAI	TTAA	1 cut(s)	859
SatI	GCNGC	5 cut(s)	19, 22, 225, 641, 717
Sau3AI	GATC	1 cut(s)	741
Sau96I	GGNCC	1 cut(s)	214
ScaI	AGTACT	1 cut(s)	805
SchI	GAGTC	1 cut(s)	84
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	769
SfaNI	GCATC	3 cut(s)	236, 425, 627
SinI	GGWCC	1 cut(s)	214
SmiMI	CAYNNNNRTG	1 cut(s)	687
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
SphI	GCATGC	1 cut(s)	117
Sse9I	AATT	1 cut(s)	664
SsiI	CCGC	4 cut(s)	9, 21, 674, 716
SspMI	CTAG	1 cut(s)	815
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	4 cut(s)	238, 528, 585, 835
TaqI	TCGA	1 cut(s)	659
TasI	AATT	1 cut(s)	664
TatI	WGTACW	3 cut(s)	181, 732, 803
TauI	GCSGC	2 cut(s)	24, 719
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	859
Tru9I	TTAA	1 cut(s)	859
TscAI	CASTG	4 cut(s)	141, 243, 533, 590
TseFI	GTSAC	2 cut(s)	132, 264
TseI	GCWGC	3 cut(s)	18, 224, 640
Tsp45I	GTSAC	2 cut(s)	132, 264
TspRI	CASTG	4 cut(s)	141, 243, 533, 590
VpaK11BI	GGWCC	1 cut(s)	214
XceI	RCATGY	2 cut(s)	117, 402
XcmI	CCANNNNNNNNNTGG	1 cut(s)	381
XspI	CTAG	1 cut(s)	815
ZrmI	AGTACT	1 cut(s)	805

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.