Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008428.1

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Forward (+)

86 .. 586

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008428.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgactgagaagccagagtggtggtggagaactttagcatgtctcccttatttagcatctttgcagatgtccgaggttggcttttatattcaaccctttgcagaacactatcaactttttggagatttgatttattttgtccccggagcaataaagaggttaccacagtggttcacaatgacatatgtcatggtggcatattttggagtggtgaagaagaaacagtggcctcacttctttaggtaccatgttattatggccatgttattagaaacgatgctgcaagtggtagcacagtcgagcaatttctttccgcttatacacttcaatggtacatttggcatagagtattgggcggctgtggcattcttgtacattttgatcttgttggagtgcataaggtgtgctcttgctggcaagtatgttaagctcccgtttttcagtactcctgctctagctcatactcttttcaccgtagaaggcaggtacagacctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

166

Amino Acids

19.58

Weight (kDa)

8.98

Isoelectric Point (pI)

45.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	474
Acc65I	GGTACC	1 cut(s)	243
AccB1I	GGYRCC	1 cut(s)	243
AciI	CCGC	2 cut(s)	314, 356
AcoI	YGGCCR	1 cut(s)	258
AfaI	GTAC	5 cut(s)	245, 334, 374, 445, 488
AgsI	TTSAA	2 cut(s)	92, 328
AluBI	AGCT	2 cut(s)	430, 458
AluI	AGCT	2 cut(s)	430, 458
Alw21I	GWGCWC	1 cut(s)	409
Alw26I	GTCTC	1 cut(s)	47
AoxI	GGCC	2 cut(s)	227, 258
ApeKI	GCWGC	1 cut(s)	280
Asp718I	GGTACC	1 cut(s)	243
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	223, 463
BalI	TGGCCA	1 cut(s)	260
BanI	GGYRCC	1 cut(s)	243
Bbv12I	GWGCWC	1 cut(s)	409
BbvI	GCAGC	1 cut(s)	267
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	47
BfaI	CTAG	1 cut(s)	455
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	2 cut(s)	281, 357
BlsI	GCNGC	2 cut(s)	282, 358
BmcAI	AGTACT	1 cut(s)	445
Bme1390I	CCNGG	1 cut(s)	144
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	144
BmsI	GCATC	2 cut(s)	65, 267
BoxI	GACNNNNGTC	1 cut(s)	185
BpuMI	CCSGG	1 cut(s)	144
BsaJI	CCNNGG	2 cut(s)	72, 142
BseDI	CCNNGG	2 cut(s)	72, 142
BseXI	GCAGC	1 cut(s)	267
BshFI	GGCC	2 cut(s)	229, 260
BshNI	GGYRCC	1 cut(s)	243
BsiHKAI	GWGCWC	1 cut(s)	409
BsiSI	CCGG	1 cut(s)	144
BslFI	GGGAC	1 cut(s)	125
BsmAI	GTCTC	1 cut(s)	47
BsmFI	GGGAC	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	229, 260
Bsp1286I	GDGCHC	1 cut(s)	409
Bsp1407I	TGTACA	1 cut(s)	372
Bsp143I	GATC	1 cut(s)	381
BspACI	CCGC	2 cut(s)	314, 356
BspANI	GGCC	2 cut(s)	229, 260
BspLI	GGNNCC	1 cut(s)	245
BspMI	ACCTGC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	243
BsrGI	TGTACA	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	72, 142
BssMI	GATC	1 cut(s)	381
Bst4CI	ACNGT	4 cut(s)	168, 225, 297, 475
BstAUI	TGTACA	1 cut(s)	372
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	159
BstKTI	GATC	1 cut(s)	384
BstMAI	GTCTC	1 cut(s)	47
BstMBI	GATC	1 cut(s)	381
BstMWI	GCNNNNNNNGC	1 cut(s)	362
BstNSI	RCATGY	1 cut(s)	42
BstPAI	GACNNNNGTC	1 cut(s)	185
BstPI	GGTNACC	1 cut(s)	159
BstSCI	CCNGG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	267
BstXI	CCANNNNNNTGG	1 cut(s)	21
BsuRI	GGCC	2 cut(s)	229, 260
BtsIMutI	CAGTG	2 cut(s)	173, 230
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	1 cut(s)	415
Csp6I	GTAC	5 cut(s)	244, 333, 373, 444, 487
CviAII	CATG	4 cut(s)	39, 190, 248, 262
CviJI	RGCY	7 cut(s)	13, 81, 229, 260, 359, 430, 458
CviKI_1	RGCY	7 cut(s)	13, 81, 229, 260, 359, 430, 458
CviQI	GTAC	5 cut(s)	244, 333, 373, 444, 487
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	1 cut(s)	383
DpnII	GATC	1 cut(s)	381
EaeI	YGGCCR	1 cut(s)	258
Eco91I	GGTNACC	1 cut(s)	159
EcoO65I	GGTNACC	1 cut(s)	159
FaeI	CATG	4 cut(s)	42, 193, 251, 265
FaqI	GGGAC	1 cut(s)	125
FatI	CATG	4 cut(s)	38, 189, 247, 261
FauNDI	CATATG	1 cut(s)	184
Fnu4HI	GCNGC	2 cut(s)	281, 357
Fsp4HI	GCNGC	2 cut(s)	281, 357
FspBI	CTAG	1 cut(s)	455
GluI	GCNGC	2 cut(s)	281, 357
HaeIII	GGCC	2 cut(s)	229, 260
HapII	CCGG	1 cut(s)	144
Hin1II	CATG	4 cut(s)	42, 193, 251, 265
HpaII	CCGG	1 cut(s)	144
HphI	GGTGA	2 cut(s)	223, 463
Hpy166II	GTNNAC	1 cut(s)	174
Hpy188I	TCNGA	1 cut(s)	73
Hpy8I	GTNNAC	1 cut(s)	174
HpyAV	CCTTC	1 cut(s)	473
HpyCH4III	ACNGT	4 cut(s)	168, 225, 297, 475
HpyCH4V	TGCA	4 cut(s)	64, 101, 283, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	362
HpyF3I	CTNAG	1 cut(s)	6
Hsp92II	CATG	4 cut(s)	42, 193, 251, 265
KpnI	GGTACC	1 cut(s)	247
Kzo9I	GATC	1 cut(s)	381
LmnI	GCTCC	2 cut(s)	146, 435
LpnPI	CCDG	5 cut(s)	27, 157, 399, 462, 469
Lsp1109I	GCAGC	1 cut(s)	267
LweI	GCATC	2 cut(s)	65, 267
MaeI	CTAG	1 cut(s)	455
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	383
MboI	GATC	1 cut(s)	381
MboII	GAAGA	2 cut(s)	226, 229
MhlI	GDGCHC	1 cut(s)	409
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	1 cut(s)	304
MluNI	TGGCCA	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	369
MnlI	CCTC	3 cut(s)	67, 150, 240
Mox20I	TGGCCA	1 cut(s)	260
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	2 cut(s)	426, 499
MslI	CAYNNNNRTG	1 cut(s)	327
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	1 cut(s)	144
MspR9I	CCNGG	1 cut(s)	144
Mva1269I	GAATGC	1 cut(s)	365
MwoI	GCNNNNNNNGC	1 cut(s)	362
NciI	CCSGG	1 cut(s)	144
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	1 cut(s)	381
NlaIII	CATG	4 cut(s)	42, 193, 251, 265
NlaIV	GGNNCC	1 cut(s)	245
NspI	RCATGY	1 cut(s)	42
PctI	GAATGC	1 cut(s)	365
PkrI	GCNGC	2 cut(s)	282, 358
PshAI	GACNNNNGTC	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	159
PspN4I	GGNNCC	1 cut(s)	245
RsaI	GTAC	5 cut(s)	245, 334, 374, 445, 488
RsaNI	GTAC	5 cut(s)	244, 333, 373, 444, 487
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	426, 499
SatI	GCNGC	2 cut(s)	281, 357
Sau3AI	GATC	1 cut(s)	381
ScaI	AGTACT	1 cut(s)	445
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	409
SetI	ASST	8 cut(s)	78, 161, 245, 404, 432, 460, 488, 496
SfaNI	GCATC	2 cut(s)	65, 267
SmiMI	CAYNNNNRTG	1 cut(s)	327
Sse9I	AATT	1 cut(s)	304
SsiI	CCGC	2 cut(s)	314, 356
SspMI	CTAG	1 cut(s)	455
StyD4I	CCNGG	1 cut(s)	142
TaaI	ACNGT	4 cut(s)	168, 225, 297, 475
TaqI	TCGA	1 cut(s)	299
TasI	AATT	1 cut(s)	304
TatI	WGTACW	2 cut(s)	372, 443
TauI	GCSGC	1 cut(s)	359
Tru1I	TTAA	2 cut(s)	426, 499
Tru9I	TTAA	2 cut(s)	426, 499
TscAI	CASTG	2 cut(s)	173, 230
TseI	GCWGC	1 cut(s)	280
TspRI	CASTG	2 cut(s)	173, 230
XceI	RCATGY	1 cut(s)	42
XcmI	CCANNNNNNNNNTGG	1 cut(s)	21
XspI	CTAG	1 cut(s)	455
ZrmI	AGTACT	1 cut(s)	445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.