Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Forward (+)

34484154 .. 34487052

Gene Structure 2899 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g44790.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGGCCACCGCCTTGAGCTGCGGCCAGACCATCCTCCTCGCTCCTCCTTCTTCCTCCTCCTCTTGGTACAAGGATGTGAATCTTAGAGGAGGCACCAAGCTCAACAGGGTTGCATTCAAGTTCAATCCAAAGTCACTGCCTATATTGTCAACCAGCAGACCACCTAATCAAGTTCTGCATGTACTGCCCAGAGAGTTGTCGGTTTCAGGACTGCCAAGCTTGGACCTTTCTGCGGTATCATCCACAGTGCTAAGGGGGAATGAAGCTGGCCGGTCACAAAAAACATCCATTCTACTCAGACAACGCAAATCTTCAACATTGGTACAAGCAAAGAAGGATAATAGTTCAATCACTATGCCTTTCCCGAAAATGACTGAGAAGCCAGAGTGGTGGTGGAGAACTTTAGCATGTCTTCCTTATTTAGCATCTTTGCAGATGTCCGAAGTTGGCTTTTATATTCAGCCATTTGCAGAACACTATCAACTCTTTGGAAATTTGATTTATTTTGTCCCCGGAGCAATAAAGAGGCTACCCTGGTGGTTCACATCTGCATATTGTGTAGGGGCATATTATGGAGTGGTGAAGAACAAACAGTGGCCTCACTTCTTTAGGTACCATGTGATTATGGCCATGTTGTTAGATACGATGCTGCAAGTGGTAGGGCAATCGAGCAATCTCTTTCCACTCATCAACTTCAATGGTACATTCGGCATAGAGTATTGGGCAGCCCTGGCATTCCTGTACATTTTGATCTTGTTGGAGTGCATAAGGTGTGCTCTTGCTGGCAAGTATGTTAAGTTCCCATTTTTCAGTATTTCTGCTCTAGTTCATACTTATTTTACCGTAGAAGGCAGGCTCAGACCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

290

Amino Acids

32.73

Weight (kDa)

9.79

Isoelectric Point (pI)

51.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	95 - 269	2.7e-64	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	612
AccB1I	GGYRCC	2 cut(s)	92, 612
AciI	CCGC	3 cut(s)	9, 21, 233
AcoI	YGGCCR	4 cut(s)	3, 22, 268, 627
AcsI	RAATTY	1 cut(s)	493
AfaI	GTAC	6 cut(s)	68, 183, 324, 614, 703, 743
AfiI	CCNNNNNNNGG	2 cut(s)	63, 232
AgsI	TTSAA	5 cut(s)	118, 124, 315, 348, 697
AjnI	CCWGG	2 cut(s)	533, 729
AluBI	AGCT	4 cut(s)	18, 100, 219, 266
AluI	AGCT	4 cut(s)	18, 100, 219, 266
Alw21I	GWGCWC	1 cut(s)	778
AoxI	GGCC	5 cut(s)	3, 22, 268, 596, 627
ApeKI	GCWGC	3 cut(s)	18, 649, 725
ApoI	RAATTY	1 cut(s)	493
Asp718I	GGTACC	1 cut(s)	612
AspS9I	GGNCC	1 cut(s)	223
AsuC2I	CCSGG	1 cut(s)	513
AsuHPI	GGTGA	1 cut(s)	592
AvaII	GGWCC	1 cut(s)	223
BalI	TGGCCA	2 cut(s)	5, 629
BanI	GGYRCC	2 cut(s)	92, 612
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	778
BbvI	GCAGC	3 cut(s)	5, 636, 737
BccI	CCATC	1 cut(s)	38
BciT130I	CCWGG	2 cut(s)	535, 731
BcnI	CCSGG	1 cut(s)	513
BfaI	CTAG	1 cut(s)	824
BisI	GCNGC	4 cut(s)	19, 22, 650, 726
BlsI	GCNGC	4 cut(s)	20, 23, 651, 727
Bme1390I	CCNGG	3 cut(s)	513, 535, 731
Bme18I	GGWCC	1 cut(s)	223
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	94, 614
BmrFI	CCNGG	3 cut(s)	513, 535, 731
BmsI	GCATC	2 cut(s)	434, 636
BpiI	GAAGAC	1 cut(s)	404
Bpu10I	CCTNAGC	1 cut(s)	251
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	513
BsaBI	GATNNNNATC	1 cut(s)	78
BsaJI	CCNNGG	3 cut(s)	511, 533, 729
Bsc4I	CCNNNNNNNGG	2 cut(s)	63, 232
Bse118I	RCCGGY	1 cut(s)	270
Bse8I	GATNNNNATC	1 cut(s)	78
BseBI	CCWGG	2 cut(s)	535, 731
BseDI	CCNNGG	3 cut(s)	511, 533, 729
BseGI	GGATG	4 cut(s)	30, 79, 239, 284
BseJI	GATNNNNATC	1 cut(s)	78
BseLI	CCNNNNNNNGG	2 cut(s)	63, 232
BseMII	CTCAG	2 cut(s)	310, 366
BseRI	GAGGAG	5 cut(s)	26, 33, 46, 49, 102
BseXI	GCAGC	3 cut(s)	5, 636, 737
BshFI	GGCC	5 cut(s)	5, 24, 270, 598, 629
BshNI	GGYRCC	2 cut(s)	92, 612
BsiHKAI	GWGCWC	1 cut(s)	778
BsiSI	CCGG	2 cut(s)	271, 513
BslFI	GGGAC	1 cut(s)	494
BslI	CCNNNNNNNGG	2 cut(s)	63, 232
BsmFI	GGGAC	1 cut(s)	494
BsmI	GAATGC	2 cut(s)	113, 734
BsnI	GGCC	5 cut(s)	5, 24, 270, 598, 629
Bsp1286I	GDGCHC	1 cut(s)	778
Bsp1407I	TGTACA	1 cut(s)	741
Bsp143I	GATC	1 cut(s)	750
BspACI	CCGC	3 cut(s)	9, 21, 233
BspANI	GGCC	5 cut(s)	5, 24, 270, 598, 629
BspCNI	CTCAG	3 cut(s)	309, 367, 870
BspLI	GGNNCC	2 cut(s)	94, 614
BspT107I	GGYRCC	2 cut(s)	92, 612
BsrFI	RCCGGY	1 cut(s)	270
BsrGI	TGTACA	1 cut(s)	741
BssAI	RCCGGY	1 cut(s)	270
BssECI	CCNNGG	3 cut(s)	511, 533, 729
BssMI	GATC	1 cut(s)	750
Bst2UI	CCWGG	2 cut(s)	535, 731
Bst4CI	ACNGT	3 cut(s)	247, 594, 844
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstAUI	TGTACA	1 cut(s)	741
BstC8I	GCNNGC	3 cut(s)	268, 784, 854
BstDEI	CTNAG	5 cut(s)	83, 251, 296, 375, 857
BstF5I	GGATG	4 cut(s)	30, 79, 239, 284
BstKTI	GATC	1 cut(s)	753
BstMBI	GATC	1 cut(s)	750
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 731
BstNI	CCWGG	2 cut(s)	535, 731
BstNSI	RCATGY	2 cut(s)	182, 411
BstSCI	CCNGG	3 cut(s)	511, 533, 729
BstV1I	GCAGC	3 cut(s)	5, 636, 737
BstV2I	GAAGAC	1 cut(s)	404
BstXI	CCANNNNNNTGG	1 cut(s)	390
BsuRI	GGCC	5 cut(s)	5, 24, 270, 598, 629
BtsCI	GGATG	4 cut(s)	30, 79, 239, 284
BtsI	GCAGTG	1 cut(s)	134
BtsIMutI	CAGTG	3 cut(s)	134, 252, 599
Cac8I	GCNNGC	3 cut(s)	268, 784, 854
Cfr10I	RCCGGY	1 cut(s)	270
Cfr13I	GGNCC	1 cut(s)	223
Csp6I	GTAC	6 cut(s)	67, 182, 323, 613, 702, 742
CviAII	CATG	4 cut(s)	179, 408, 617, 631
CviQI	GTAC	6 cut(s)	67, 182, 323, 613, 702, 742
DdeI	CTNAG	5 cut(s)	83, 251, 296, 375, 857
DpnI	GATC	1 cut(s)	752
DpnII	GATC	1 cut(s)	750
EaeI	YGGCCR	4 cut(s)	3, 22, 268, 627
Eco47I	GGWCC	1 cut(s)	223
EcoRII	CCWGG	2 cut(s)	533, 729
FaeI	CATG	4 cut(s)	182, 411, 620, 634
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	4 cut(s)	178, 407, 616, 630
Fnu4HI	GCNGC	4 cut(s)	19, 22, 650, 726
FokI	GGATG	4 cut(s)	17, 86, 226, 271
Fsp4HI	GCNGC	4 cut(s)	19, 22, 650, 726
FspBI	CTAG	1 cut(s)	824
GluI	GCNGC	4 cut(s)	19, 22, 650, 726
HaeIII	GGCC	5 cut(s)	5, 24, 270, 598, 629
HapII	CCGG	2 cut(s)	271, 513
Hin1II	CATG	4 cut(s)	182, 411, 620, 634
HincII	GTYRAC	1 cut(s)	150
HindII	GTYRAC	1 cut(s)	150
HindIII	AAGCTT	1 cut(s)	217
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	2 cut(s)	271, 513
HphI	GGTGA	1 cut(s)	592
Hpy166II	GTNNAC	2 cut(s)	150, 543
Hpy188I	TCNGA	3 cut(s)	299, 442, 860
Hpy188III	TCNNGA	2 cut(s)	207, 364
Hpy8I	GTNNAC	2 cut(s)	150, 543
HpyAV	CCTTC	3 cut(s)	57, 328, 842
HpyCH4III	ACNGT	3 cut(s)	247, 594, 844
HpyCH4V	TGCA	7 cut(s)	113, 178, 433, 470, 551, 652, 765
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 731
HpyF3I	CTNAG	5 cut(s)	83, 251, 296, 375, 857
Hsp92II	CATG	4 cut(s)	182, 411, 620, 634
KpnI	GGTACC	1 cut(s)	616
Kzo9I	GATC	1 cut(s)	750
LmnI	GCTCC	2 cut(s)	46, 515
Lsp1109I	GCAGC	3 cut(s)	5, 636, 737
LweI	GCATC	2 cut(s)	434, 636
MaeI	CTAG	1 cut(s)	824
MaeIII	GTNAC	2 cut(s)	132, 273
MalI	GATC	1 cut(s)	752
MboI	GATC	1 cut(s)	750
MboII	GAAGA	4 cut(s)	42, 303, 404, 595
MhlI	GDGCHC	1 cut(s)	778
MlsI	TGGCCA	2 cut(s)	5, 629
MluCI	AATT	1 cut(s)	493
MluNI	TGGCCA	2 cut(s)	5, 629
MmeI	TCCRAC	1 cut(s)	738
Mox20I	TGGCCA	2 cut(s)	5, 629
MscI	TGGCCA	2 cut(s)	5, 629
MseI	TTAA	1 cut(s)	795
Msp20I	TGGCCA	2 cut(s)	5, 629
MspI	CCGG	2 cut(s)	271, 513
MspR9I	CCNGG	3 cut(s)	513, 535, 731
Mva1269I	GAATGC	2 cut(s)	113, 734
MvaI	CCWGG	2 cut(s)	535, 731
MwoI	GCNNNNNNNGC	2 cut(s)	184, 731
NciI	CCSGG	1 cut(s)	513
NdeII	GATC	1 cut(s)	750
NlaIII	CATG	4 cut(s)	182, 411, 620, 634
NlaIV	GGNNCC	2 cut(s)	94, 614
NmuCI	GTSAC	2 cut(s)	132, 273
NspI	RCATGY	2 cut(s)	182, 411
PctI	GAATGC	2 cut(s)	113, 734
PfeI	GAWTC	1 cut(s)	79
PkrI	GCNGC	4 cut(s)	20, 23, 651, 727
Psp6I	CCWGG	2 cut(s)	533, 729
PspGI	CCWGG	2 cut(s)	533, 729
PspN4I	GGNNCC	2 cut(s)	94, 614
PspPI	GGNCC	1 cut(s)	223
PsrI	GAACNNNNNNTAC	2 cut(s)	782, 814
RsaI	GTAC	6 cut(s)	68, 183, 324, 614, 703, 743
RsaNI	GTAC	6 cut(s)	67, 182, 323, 613, 702, 742
SaqAI	TTAA	1 cut(s)	795
SatI	GCNGC	4 cut(s)	19, 22, 650, 726
Sau3AI	GATC	1 cut(s)	750
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	513, 535, 731
SduI	GDGCHC	1 cut(s)	778
SetI	ASST	9 cut(s)	20, 102, 166, 221, 228, 268, 614, 773, 865
SfaNI	GCATC	2 cut(s)	434, 636
SinI	GGWCC	1 cut(s)	223
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	1 cut(s)	493
SsiI	CCGC	3 cut(s)	9, 21, 233
SspMI	CTAG	1 cut(s)	824
StyD4I	CCNGG	3 cut(s)	511, 533, 729
TaaI	ACNGT	3 cut(s)	247, 594, 844
TaqI	TCGA	1 cut(s)	668
TasI	AATT	1 cut(s)	493
TatI	WGTACW	2 cut(s)	181, 741
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	795
Tru9I	TTAA	1 cut(s)	795
TscAI	CASTG	3 cut(s)	141, 252, 599
TseFI	GTSAC	2 cut(s)	132, 273
TseI	GCWGC	3 cut(s)	18, 649, 725
Tsp45I	GTSAC	2 cut(s)	132, 273
TspDTI	ATGAA	2 cut(s)	276, 818
TspRI	CASTG	3 cut(s)	141, 252, 599
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	493
XceI	RCATGY	2 cut(s)	182, 411
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XspI	CTAG	1 cut(s)	824

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.