Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018381.1

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Reverse (-)

1772 .. 5284

Gene Structure 3513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018381.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

atgcaaggttattcatttgaaaagcaagtgaagattgtcattgctaccatgacacttcataattatatacggatacatgcacatggtgatagacattttgtccgcagtgaagaaagagaaggttatgggtcaagtggtgagatagaaatggatgatgatgtacaagaagaatatcagggtaatcacaagaaaggcccagatgaagtatataatagagttttgggaccattcgtgcatgcaaagaaaagccgacggcgccgagtatctcagaacctctacacatccccagaaccaatggcgaccgccttgagctgcggccagaccatcttcctcgctcctccttctcgcatcacctctcggtacagggatgtgaagcttagacgactcaccaagccaaacagggttgcatgcaacttcactccaaagtcaatgcctatattttcaaccagcagaccacctaatcaacttctgcctgtactgcccagagtttcaggattgccaagcttggacctttctgctgcatcatccacagtgctaagggggaatgaagctggccggtcacagaaaatatccatcctactcagacaacgcaaatcttcaacattggtacaagcaaagaaggataatagttcaatcactatacctttcccgaaaatgactgagaagccagagtggtggtggagaactttagcatgtctcccttatttagcatctttgcagatgtccgaggttggcttttatattcaaccctttgcagaacactatcaactttttggagatttgatttattttgtccccggagcaataaagaggttaccacagtggttcacaatgacatatgtcatggtggcatattttggagtggtgaagaagaaacagtggcctcacttctttaggtaccatgttattatggccatgttattagaaacgatgctgcaagtggtagcacagtcgagcaatttctttccgcttatacacttcaatggtacatttggcatagagtattgggcggctgtggcattcttgtacattttgatcttgttggagtgcataaggtgtgctcttgctggcaagtatgttaagctcccgtttttcagtactcctgctctagctcatactcttttcaccgtagaaggcaggtacagacctttttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

384

Amino Acids

44.15

Weight (kDa)

9.78

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1128
Acc65I	GGTACC	1 cut(s)	897
AccB1I	GGYRCC	2 cut(s)	255, 897
AciI	CCGC	5 cut(s)	103, 303, 315, 968, 1010
AcoI	YGGCCR	3 cut(s)	316, 553, 912
AcyI	GRCGYC	1 cut(s)	256
AdeI	CACNNNGTG	1 cut(s)	86
AfaI	GTAC	9 cut(s)	162, 362, 477, 609, 899, 988, 1028, 1099, 1142
AgsI	TTSAA	6 cut(s)	20, 444, 600, 633, 746, 982
AhdI	GACNNNNNGTC	1 cut(s)	98
AluBI	AGCT	6 cut(s)	312, 376, 504, 551, 1084, 1112
AluI	AGCT	6 cut(s)	312, 376, 504, 551, 1084, 1112
Alw21I	GWGCWC	1 cut(s)	1063
Alw26I	GTCTC	1 cut(s)	701
AoxI	GGCC	5 cut(s)	193, 316, 553, 881, 912
ApeKI	GCWGC	3 cut(s)	312, 518, 934
Asp718I	GGTACC	1 cut(s)	897
AspLEI	GCGC	1 cut(s)	258
AspS9I	GGNCC	3 cut(s)	194, 224, 508
AsuC2I	CCSGG	1 cut(s)	798
AsuHPI	GGTGA	6 cut(s)	98, 149, 343, 379, 877, 1117
AvaII	GGWCC	2 cut(s)	224, 508
BalI	TGGCCA	1 cut(s)	914
BanI	GGYRCC	2 cut(s)	255, 897
Bbv12I	GWGCWC	1 cut(s)	1063
BbvI	GCAGC	3 cut(s)	299, 505, 921
BccI	CCATC	2 cut(s)	332, 581
BceAI	ACGGC	1 cut(s)	269
BciVI	GTATCC	1 cut(s)	66
BcnI	CCSGG	1 cut(s)	798
BcoDI	GTCTC	1 cut(s)	701
BfaI	CTAG	1 cut(s)	1109
BfoI	RGCGCY	1 cut(s)	259
BfuAI	ACCTGC	1 cut(s)	1128
BfuI	GTATCC	1 cut(s)	66
BisI	GCNGC	5 cut(s)	313, 316, 519, 935, 1011
BlsI	GCNGC	5 cut(s)	314, 317, 520, 936, 1012
BmcAI	AGTACT	1 cut(s)	1099
Bme1390I	CCNGG	1 cut(s)	798
Bme18I	GGWCC	2 cut(s)	224, 508
BmeRI	GACNNNNNGTC	1 cut(s)	98
BmgT120I	GGNCC	3 cut(s)	194, 224, 508
BmiI	GGNNCC	3 cut(s)	225, 257, 899
BmrFI	CCNGG	1 cut(s)	798
BmsI	GCATC	4 cut(s)	357, 530, 719, 921
BoxI	GACNNNNGTC	1 cut(s)	839
Bpu10I	CCTNAGC	1 cut(s)	536
BpuEI	CTTGAG	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	798
BsaHI	GRCGYC	1 cut(s)	256
BsaJI	CCNNGG	2 cut(s)	726, 796
Bse118I	RCCGGY	1 cut(s)	555
Bse3DI	GCAATG	1 cut(s)	39
BseDI	CCNNGG	2 cut(s)	726, 796
BseGI	GGATG	5 cut(s)	157, 281, 373, 524, 573
BseMI	GCAATG	1 cut(s)	39
BseMII	CTCAG	3 cut(s)	281, 595, 651
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	3 cut(s)	299, 505, 921
Bsh1285I	CGRYCG	1 cut(s)	303
BshFI	GGCC	5 cut(s)	195, 318, 555, 883, 914
BshNI	GGYRCC	2 cut(s)	255, 897
BsiEI	CGRYCG	1 cut(s)	303
BsiHKAI	GWGCWC	1 cut(s)	1063
BsiSI	CCGG	2 cut(s)	556, 798
BslFI	GGGAC	2 cut(s)	237, 779
BsmAI	GTCTC	1 cut(s)	701
BsmFI	GGGAC	2 cut(s)	237, 779
BsmI	GAATGC	1 cut(s)	1019
BsnI	GGCC	5 cut(s)	195, 318, 555, 883, 914
Bsp1286I	GDGCHC	1 cut(s)	1063
Bsp1407I	TGTACA	2 cut(s)	160, 1026
Bsp143I	GATC	1 cut(s)	1035
BspACI	CCGC	5 cut(s)	103, 303, 315, 968, 1010
BspANI	GGCC	5 cut(s)	195, 318, 555, 883, 914
BspCNI	CTCAG	3 cut(s)	280, 594, 652
BspLI	GGNNCC	3 cut(s)	225, 257, 899
BspMI	ACCTGC	1 cut(s)	1128
BspT107I	GGYRCC	2 cut(s)	255, 897
BsrDI	GCAATG	1 cut(s)	39
BsrFI	RCCGGY	1 cut(s)	555
BsrGI	TGTACA	2 cut(s)	160, 1026
BssAI	RCCGGY	1 cut(s)	555
BssECI	CCNNGG	2 cut(s)	726, 796
BssMI	GATC	1 cut(s)	1035
BssNI	GRCGYC	1 cut(s)	256
Bst4CI	ACNGT	5 cut(s)	532, 822, 879, 951, 1129
BstACI	GRCGYC	1 cut(s)	256
BstAUI	TGTACA	2 cut(s)	160, 1026
BstC8I	GCNNGC	4 cut(s)	237, 409, 553, 1069
BstDEI	CTNAG	5 cut(s)	267, 377, 536, 581, 660
BstEII	GGTNACC	1 cut(s)	813
BstF5I	GGATG	5 cut(s)	157, 281, 373, 524, 573
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	1 cut(s)	1038
BstMAI	GTCTC	1 cut(s)	701
BstMBI	GATC	1 cut(s)	1035
BstMCI	CGRYCG	1 cut(s)	303
BstMWI	GCNNNNNNNGC	3 cut(s)	255, 478, 1016
BstNSI	RCATGY	4 cut(s)	80, 239, 411, 696
BstPAI	GACNNNNGTC	1 cut(s)	839
BstPI	GGTNACC	1 cut(s)	813
BstSCI	CCNGG	1 cut(s)	796
BstV1I	GCAGC	3 cut(s)	299, 505, 921
BstXI	CCANNNNNNTGG	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	66
BsuRI	GGCC	5 cut(s)	195, 318, 555, 883, 914
BtsCI	GGATG	5 cut(s)	157, 281, 373, 524, 573
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	4 cut(s)	112, 537, 827, 884
BveI	ACCTGC	1 cut(s)	1128
Cac8I	GCNNGC	4 cut(s)	237, 409, 553, 1069
CfoI	GCGC	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	555
Cfr13I	GGNCC	3 cut(s)	194, 224, 508
Csp6I	GTAC	9 cut(s)	161, 361, 476, 608, 898, 987, 1027, 1098, 1141
CviAII	CATG	9 cut(s)	49, 77, 83, 236, 408, 693, 844, 902, 916
CviQI	GTAC	9 cut(s)	161, 361, 476, 608, 898, 987, 1027, 1098, 1141
DdeI	CTNAG	5 cut(s)	267, 377, 536, 581, 660
DinI	GGCGCC	1 cut(s)	257
DpnI	GATC	1 cut(s)	1037
DpnII	GATC	1 cut(s)	1035
DraIII	CACNNNGTG	1 cut(s)	86
DriI	GACNNNNNGTC	1 cut(s)	98
EaeI	YGGCCR	3 cut(s)	316, 553, 912
Eam1105I	GACNNNNNGTC	1 cut(s)	98
Eco47I	GGWCC	2 cut(s)	224, 508
Eco91I	GGTNACC	1 cut(s)	813
EcoO65I	GGTNACC	1 cut(s)	813
EgeI	GGCGCC	1 cut(s)	257
EheI	GGCGCC	1 cut(s)	257
FaeI	CATG	9 cut(s)	52, 80, 86, 239, 411, 696, 847, 905, 919
FaqI	GGGAC	2 cut(s)	237, 779
FatI	CATG	9 cut(s)	48, 76, 82, 235, 407, 692, 843, 901, 915
FauNDI	CATATG	1 cut(s)	838
Fnu4HI	GCNGC	5 cut(s)	313, 316, 519, 935, 1011
FokI	GGATG	5 cut(s)	164, 268, 380, 511, 560
Fsp4HI	GCNGC	5 cut(s)	313, 316, 519, 935, 1011
FspBI	CTAG	1 cut(s)	1109
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	5 cut(s)	313, 316, 519, 935, 1011
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	5 cut(s)	195, 318, 555, 883, 914
HapII	CCGG	2 cut(s)	556, 798
HhaI	GCGC	1 cut(s)	258
Hin1I	GRCGYC	1 cut(s)	256
Hin1II	CATG	9 cut(s)	52, 80, 86, 239, 411, 696, 847, 905, 919
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	2 cut(s)	374, 502
HinfI	GANTC	1 cut(s)	384
HpaII	CCGG	2 cut(s)	556, 798
HphI	GGTGA	6 cut(s)	98, 149, 343, 379, 877, 1117
Hpy166II	GTNNAC	1 cut(s)	828
Hpy188I	TCNGA	3 cut(s)	270, 584, 727
Hpy188III	TCNNGA	2 cut(s)	492, 649
Hpy8I	GTNNAC	1 cut(s)	828
Hpy99I	CGWCG	1 cut(s)	255
HpyAV	CCTTC	4 cut(s)	113, 351, 613, 1127
HpyCH4III	ACNGT	5 cut(s)	532, 822, 879, 951, 1129
HpyF10VI	GCNNNNNNNGC	3 cut(s)	255, 478, 1016
HpyF3I	CTNAG	5 cut(s)	267, 377, 536, 581, 660
Hsp92I	GRCGYC	1 cut(s)	256
Hsp92II	CATG	9 cut(s)	52, 80, 86, 239, 411, 696, 847, 905, 919
HspAI	GCGC	1 cut(s)	256
KasI	GGCGCC	1 cut(s)	255
KpnI	GGTACC	1 cut(s)	901
Kzo9I	GATC	1 cut(s)	1035
LmnI	GCTCC	3 cut(s)	340, 800, 1089
Lsp1109I	GCAGC	3 cut(s)	299, 505, 921
LweI	GCATC	4 cut(s)	357, 530, 719, 921
MaeI	CTAG	1 cut(s)	1109
MaeIII	GTNAC	2 cut(s)	558, 813
MalI	GATC	1 cut(s)	1037
MboI	GATC	1 cut(s)	1035
MboII	GAAGA	7 cut(s)	43, 122, 179, 319, 588, 880, 883
MhlI	GDGCHC	1 cut(s)	1063
MlsI	TGGCCA	1 cut(s)	914
MluCI	AATT	2 cut(s)	61, 958
MluNI	TGGCCA	1 cut(s)	914
Mly113I	GGCGCC	1 cut(s)	256
MlyI	GAGTC	1 cut(s)	378
MmeI	TCCRAC	1 cut(s)	1023
MnlI	CCTC	7 cut(s)	284, 341, 348, 364, 721, 804, 894
Mox20I	TGGCCA	1 cut(s)	914
MscI	TGGCCA	1 cut(s)	914
MseI	TTAA	2 cut(s)	1080, 1153
MslI	CAYNNNNRTG	2 cut(s)	81, 981
Msp20I	TGGCCA	1 cut(s)	914
MspI	CCGG	2 cut(s)	556, 798
MspR9I	CCNGG	1 cut(s)	798
Mva1269I	GAATGC	1 cut(s)	1019
MwoI	GCNNNNNNNGC	3 cut(s)	255, 478, 1016
NarI	GGCGCC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	798
NdeI	CATATG	1 cut(s)	838
NdeII	GATC	1 cut(s)	1035
NlaIII	CATG	9 cut(s)	52, 80, 86, 239, 411, 696, 847, 905, 919
NlaIV	GGNNCC	3 cut(s)	225, 257, 899
NmeAIII	GCCGAG	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	558
NspI	RCATGY	4 cut(s)	80, 239, 411, 696
PaeI	GCATGC	2 cut(s)	239, 411
PctI	GAATGC	1 cut(s)	1019
PkrI	GCNGC	5 cut(s)	314, 317, 520, 936, 1012
PleI	GAGTC	1 cut(s)	378
PluTI	GGCGCC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	378
PshAI	GACNNNNGTC	1 cut(s)	839
PspEI	GGTNACC	1 cut(s)	813
PspN4I	GGNNCC	3 cut(s)	225, 257, 899
PspPI	GGNCC	3 cut(s)	194, 224, 508
RsaI	GTAC	9 cut(s)	162, 362, 477, 609, 899, 988, 1028, 1099, 1142
RsaNI	GTAC	9 cut(s)	161, 361, 476, 608, 898, 987, 1027, 1098, 1141
RseI	CAYNNNNRTG	2 cut(s)	81, 981
SaqAI	TTAA	2 cut(s)	1080, 1153
SatI	GCNGC	5 cut(s)	313, 316, 519, 935, 1011
Sau3AI	GATC	1 cut(s)	1035
Sau96I	GGNCC	3 cut(s)	194, 224, 508
ScaI	AGTACT	1 cut(s)	1099
SchI	GAGTC	1 cut(s)	378
ScrFI	CCNGG	1 cut(s)	798
SduI	GDGCHC	1 cut(s)	1063
SfaNI	GCATC	4 cut(s)	357, 530, 719, 921
SfoI	GGCGCC	1 cut(s)	257
SinI	GGWCC	2 cut(s)	224, 508
SmiMI	CAYNNNNRTG	2 cut(s)	81, 981
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
SphI	GCATGC	2 cut(s)	239, 411
Sse9I	AATT	2 cut(s)	61, 958
SsiI	CCGC	5 cut(s)	103, 303, 315, 968, 1010
SspDI	GGCGCC	1 cut(s)	255
SspMI	CTAG	1 cut(s)	1109
StyD4I	CCNGG	1 cut(s)	796
TaaI	ACNGT	5 cut(s)	532, 822, 879, 951, 1129
TaqI	TCGA	1 cut(s)	953
TasI	AATT	2 cut(s)	61, 958
TatI	WGTACW	4 cut(s)	160, 475, 1026, 1097
TauI	GCSGC	2 cut(s)	318, 1013
Tru1I	TTAA	2 cut(s)	1080, 1153
Tru9I	TTAA	2 cut(s)	1080, 1153
TscAI	CASTG	4 cut(s)	112, 537, 827, 884
TseFI	GTSAC	1 cut(s)	558
TseI	GCWGC	3 cut(s)	312, 518, 934
Tsp45I	GTSAC	1 cut(s)	558
TspDTI	ATGAA	3 cut(s)	47, 216, 561
TspGWI	ACGGA	1 cut(s)	85
TspRI	CASTG	4 cut(s)	112, 537, 827, 884
VpaK11BI	GGWCC	2 cut(s)	224, 508
XceI	RCATGY	4 cut(s)	80, 239, 411, 696
XcmI	CCANNNNNNNNNTGG	1 cut(s)	675
XspI	CTAG	1 cut(s)	1109
ZrmI	AGTACT	1 cut(s)	1099

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.