Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0008813

Physical Location & Seq

Genomic Coordinates Reverse (-)

6919841 .. 6923044

Gene Structure 3204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1083300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCGATCGCCTTGGGCTGCCGCCTCAGCGTTCTTGCCTCCCGGTACAAGGATGTGAATCTAAAAACACAGAACAAGCGCAATGGGGTTGCATGCAGTTCTAATTTGAATGCAATGCCTATACTGTCAAGCAGCAGGAGCCTACAGCTTAGTCACAATCTGCATTCTTGGGCTCCGAAAGGATTGCCGAGCTTGCACATTTCTTCTACGTCATCCACACTGTTAAGAGGGGATCAAGGCAATCAGTCACACAACATATCCGTCTTACCAAGACAACGGAGATCTTCAACTTTGGCACAAGCACAGAAGAGTAACTCAATCAGTATACCTTTTCCGAAAATGAAAGAGAAGCCGGAATGGTGGTGGAGAACTTTAGCATGTCTCCCCTACTTAATCGCTTTGCAGATGTCTGATGCCGGGTTTTATATTCAACCCTTAGCAGAACACTATGAATTGTTTGGAGACTTGGTTTATTATGTCCCAGGAGCAATAAAGAGGTTACCGTATTGGTTCACAATGATATATTTCTTCTTCGCATACTTTGGAGTGGTGAAGAGAAAAGAGTGGCCTCACTTCTTCAGGTACCACGTAATCATGGCAATGCTATTAGAAACAATGCTGCAAGTAGTGTGGTACTCGAGCAATTTTTTCCCGCTTATACACTTCAACGGCACATTCGGCATAGAATACTGGGCGGTCGTGGCAGTCGTGTACGTTTCGGTCTTGCTCGAGTGTATAAGGTGTGCTCTTGCCGGCAAGTATGTTAAACTCCCATTCTTTAGTACCCCTGCTTTAGTCCATACTCTTTTCCAAGTAGAAGGATACCATAAACCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009507 GO:0009536 GO:0015031 GO:0015833 GO:0017038 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TIC20

Protein Analysis

280

Amino Acids

32.03

Weight (kDa)

9.64

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIC20	PF16166	90 - 263	5.5e-69	Chloroplast import apparatus Tic20-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008813)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G03320
fragaria_vesca	FvH4_6g44790 FvH4_6g44790 FvH4_6g44790
malus_domestica	MD09G1093200.v1.1 MD17G1083300.v1.1
prunus_persica	Prupe.3G232000_v2.0.a1
pyrus_communis	pycom09g01840 pycom17g08110
rosa_chinensis	RchiOBHm_Chr2g0161961
rosa_laevigata	RLG00000021311
rosa_multiflora	Rmu_sc0003711.1_g000024 Rmu_sc0008428.1_g000001 Rmu_sc0018381.1_g000001
rosa_roxburghii	Rroxscaffold_2G00088440
rosa_rugosa	Rorug02G0493500 Rorug02G0493500 Rorug02G0493600 Rorug02G0493600
rosa_samantha	Rh2AG559500 Rh2CG543000 Rh2DG582700
rosa_wichuraiana	Rw2G046300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	582
AccB1I	GGYRCC	1 cut(s)	582
AccI	GTMKAC	1 cut(s)	325
AciI	CCGC	3 cut(s)	22, 653, 695
AclWI	GGATC	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	562
AfaI	GTAC	5 cut(s)	47, 584, 635, 713, 784
AfiI	CCNNNNNNNGG	1 cut(s)	49
AgsI	TTSAA	4 cut(s)	109, 288, 431, 667
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	2 cut(s)	148, 192
AluI	AGCT	2 cut(s)	148, 192
Alw21I	GWGCWC	1 cut(s)	748
Alw26I	GTCTC	2 cut(s)	386, 456
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	2 cut(s)	637, 728
AoxI	GGCC	1 cut(s)	566
ApeKI	GCWGC	3 cut(s)	18, 132, 619
AsiSI	GCGATCGC	1 cut(s)	9
Asp718I	GGTACC	1 cut(s)	582
AspLEI	GCGC	1 cut(s)	81
AsuC2I	CCSGG	2 cut(s)	43, 418
AsuHPI	GGTGA	1 cut(s)	562
AvaI	CYCGRG	2 cut(s)	637, 728
BanI	GGYRCC	1 cut(s)	582
BanII	GRGCYC	1 cut(s)	175
Bbv12I	GWGCWC	1 cut(s)	748
BbvCI	CCTCAGC	1 cut(s)	26
BbvI	GCAGC	3 cut(s)	5, 144, 606
BceAI	ACGGC	1 cut(s)	685
BcgI	CGANNNNNNTGC	2 cut(s)	166, 200
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	815
BcnI	CCSGG	2 cut(s)	43, 418
BcoDI	GTCTC	2 cut(s)	386, 456
BfmI	CTRYAG	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	815
BglII	AGATCT	1 cut(s)	281
BisI	GCNGC	4 cut(s)	19, 22, 133, 620
BlsI	GCNGC	4 cut(s)	20, 23, 134, 621
Bme1390I	CCNGG	3 cut(s)	43, 418, 483
BmeT110I	CYCGRG	2 cut(s)	637, 728
BmiI	GGNNCC	3 cut(s)	140, 174, 584
BmrFI	CCNGG	3 cut(s)	43, 418, 483
BmrI	ACTGGG	1 cut(s)	700
BmsI	GCATC	1 cut(s)	403
BmuI	ACTGGG	1 cut(s)	700
Bpu10I	CCTNAGC	2 cut(s)	26, 436
BpuMI	CCSGG	2 cut(s)	43, 418
BsaAI	YACGTR	1 cut(s)	589
BsaBI	GATNNNNATC	1 cut(s)	57
BsaJI	CCNNGG	2 cut(s)	12, 481
BsaXI	ACNNNNNCTCC	2 cut(s)	453, 483
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	752
Bse1I	ACTGG	1 cut(s)	695
Bse3DI	GCAATG	3 cut(s)	88, 120, 606
Bse8I	GATNNNNATC	1 cut(s)	57
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	2 cut(s)	12, 481
BseGI	GGATG	2 cut(s)	58, 212
BseJI	GATNNNNATC	1 cut(s)	57
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMI	GCAATG	3 cut(s)	88, 120, 606
BseMII	CTCAG	1 cut(s)	40
BseNI	ACTGG	1 cut(s)	695
BseXI	GCAGC	3 cut(s)	5, 144, 606
Bsh1285I	CGRYCG	2 cut(s)	9, 699
BshFI	GGCC	1 cut(s)	568
BshNI	GGYRCC	1 cut(s)	582
BsiEI	CGRYCG	2 cut(s)	9, 699
BsiHKAI	GWGCWC	1 cut(s)	748
BsiHKCI	CYCGRG	2 cut(s)	637, 728
BsiSI	CCGG	4 cut(s)	43, 353, 417, 753
BslFI	GGGAC	1 cut(s)	464
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	2 cut(s)	386, 456
BsmFI	GGGAC	1 cut(s)	464
BsmI	GAATGC	2 cut(s)	115, 163
BsnI	GGCC	1 cut(s)	568
BsoBI	CYCGRG	2 cut(s)	637, 728
Bsp1286I	GDGCHC	2 cut(s)	175, 748
Bsp143I	GATC	3 cut(s)	6, 232, 281
BspACI	CCGC	3 cut(s)	22, 653, 695
BspANI	GGCC	1 cut(s)	568
BspCNI	CTCAG	1 cut(s)	39
BspLI	GGNNCC	3 cut(s)	140, 174, 584
BspPI	GGATC	1 cut(s)	240
BspT107I	GGYRCC	1 cut(s)	582
BsrDI	GCAATG	3 cut(s)	88, 120, 606
BsrFI	RCCGGY	1 cut(s)	752
BsrI	ACTGG	1 cut(s)	695
BssAI	RCCGGY	1 cut(s)	752
BssECI	CCNNGG	2 cut(s)	12, 481
BssMI	GATC	3 cut(s)	6, 232, 281
BssNAI	GTATAC	1 cut(s)	326
BssT1I	CCWWGG	1 cut(s)	12
Bst1107I	GTATAC	1 cut(s)	326
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	3 cut(s)	126, 222, 504
Bst6I	CTCTTC	2 cut(s)	302, 548
BstBAI	YACGTR	1 cut(s)	589
BstC8I	GCNNGC	3 cut(s)	94, 194, 754
BstDEI	CTNAG	3 cut(s)	26, 149, 436
BstEII	GGTNACC	1 cut(s)	498
BstF5I	GGATG	2 cut(s)	58, 212
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	3 cut(s)	9, 235, 284
BstMAI	GTCTC	2 cut(s)	386, 456
BstMBI	GATC	3 cut(s)	6, 232, 281
BstMCI	CGRYCG	2 cut(s)	9, 699
BstMWI	GCNNNNNNNGC	5 cut(s)	27, 138, 193, 678, 701
BstNI	CCWGG	1 cut(s)	483
BstNSI	RCATGY	2 cut(s)	96, 381
BstPI	GGTNACC	1 cut(s)	498
BstSCI	CCNGG	3 cut(s)	41, 416, 481
BstSFI	CTRYAG	1 cut(s)	143
BstV1I	GCAGC	3 cut(s)	5, 144, 606
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BstZ17I	GTATAC	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	815
BsuRI	GGCC	1 cut(s)	568
BtsCI	GGATG	2 cut(s)	58, 212
BtsIMutI	CAGTG	1 cut(s)	218
Cac8I	GCNNGC	3 cut(s)	94, 194, 754
CfoI	GCGC	1 cut(s)	81
Cfr10I	RCCGGY	1 cut(s)	752
Csp6I	GTAC	5 cut(s)	46, 583, 634, 712, 783
CspCI	CAANNNNNGTGG	2 cut(s)	611, 646
CviAII	CATG	3 cut(s)	93, 378, 595
CviJI	RGCY	7 cut(s)	18, 141, 148, 173, 192, 352, 568
CviKI_1	RGCY	7 cut(s)	18, 141, 148, 173, 192, 352, 568
CviQI	GTAC	5 cut(s)	46, 583, 634, 712, 783
DdeI	CTNAG	3 cut(s)	26, 149, 436
DpnI	GATC	3 cut(s)	8, 234, 283
DpnII	GATC	3 cut(s)	6, 232, 281
Eam1104I	CTCTTC	2 cut(s)	302, 548
EarI	CTCTTC	2 cut(s)	302, 548
Eco130I	CCWWGG	1 cut(s)	12
Eco24I	GRGCYC	1 cut(s)	175
Eco57I	CTGAAG	1 cut(s)	562
Eco88I	CYCGRG	2 cut(s)	637, 728
Eco91I	GGTNACC	1 cut(s)	498
EcoO65I	GGTNACC	1 cut(s)	498
EcoRII	CCWGG	1 cut(s)	481
EcoT14I	CCWWGG	1 cut(s)	12
EcoT38I	GRGCYC	1 cut(s)	175
ErhI	CCWWGG	1 cut(s)	12
FaeI	CATG	3 cut(s)	96, 381, 598
FaqI	GGGAC	1 cut(s)	464
FatI	CATG	3 cut(s)	92, 377, 594
FauI	CCCGC	1 cut(s)	660
FblI	GTMKAC	1 cut(s)	325
Fnu4HI	GCNGC	4 cut(s)	19, 22, 133, 620
FokI	GGATG	2 cut(s)	65, 199
FriOI	GRGCYC	1 cut(s)	175
Fsp4HI	GCNGC	4 cut(s)	19, 22, 133, 620
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	4 cut(s)	19, 22, 133, 620
HaeIII	GGCC	1 cut(s)	568
HapII	CCGG	4 cut(s)	43, 353, 417, 753
HhaI	GCGC	1 cut(s)	81
Hin1II	CATG	3 cut(s)	96, 381, 598
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HinfI	GANTC	1 cut(s)	58
HpaII	CCGG	4 cut(s)	43, 353, 417, 753
HphI	GGTGA	1 cut(s)	562
Hpy166II	GTNNAC	3 cut(s)	326, 513, 712
Hpy188I	TCNGA	4 cut(s)	177, 336, 412, 839
Hpy8I	GTNNAC	3 cut(s)	326, 513, 712
HpyAV	CCTTC	1 cut(s)	812
HpyCH4III	ACNGT	3 cut(s)	126, 222, 504
HpyCH4IV	ACGT	3 cut(s)	209, 588, 714
HpyCH4V	TGCA	7 cut(s)	92, 96, 113, 163, 196, 403, 622
HpyF10VI	GCNNNNNNNGC	5 cut(s)	27, 138, 193, 678, 701
HpyF3I	CTNAG	3 cut(s)	26, 149, 436
HpySE526I	ACGT	3 cut(s)	209, 588, 714
Hsp92II	CATG	3 cut(s)	96, 381, 598
HspAI	GCGC	1 cut(s)	79
KpnI	GGTACC	1 cut(s)	586
KroI	GCCGGC	1 cut(s)	752
KroNI	GCCGGC	1 cut(s)	754
Kzo9I	GATC	3 cut(s)	6, 232, 281
LmnI	GCTCC	3 cut(s)	138, 178, 485
Lsp1109I	GCAGC	3 cut(s)	5, 144, 606
LweI	GCATC	1 cut(s)	403
MaeII	ACGT	3 cut(s)	209, 588, 714
MaeIII	GTNAC	4 cut(s)	152, 246, 311, 498
MalI	GATC	3 cut(s)	8, 234, 283
MboI	GATC	3 cut(s)	6, 232, 281
MboII	GAAGA	7 cut(s)	195, 276, 319, 520, 523, 565, 568
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	2 cut(s)	175, 748
MluCI	AATT	3 cut(s)	103, 452, 643
MnlI	CCTC	5 cut(s)	35, 49, 221, 489, 579
MroNI	GCCGGC	1 cut(s)	752
MseI	TTAA	3 cut(s)	224, 392, 765
MslI	CAYNNNNRTG	1 cut(s)	599
MspI	CCGG	4 cut(s)	43, 353, 417, 753
MspR9I	CCNGG	3 cut(s)	43, 418, 483
Mva1269I	GAATGC	2 cut(s)	115, 163
MvaI	CCWGG	1 cut(s)	483
MwoI	GCNNNNNNNGC	5 cut(s)	27, 138, 193, 678, 701
NaeI	GCCGGC	1 cut(s)	754
NciI	CCSGG	2 cut(s)	43, 418
NdeII	GATC	3 cut(s)	6, 232, 281
NgoMIV	GCCGGC	1 cut(s)	752
NlaIII	CATG	3 cut(s)	96, 381, 598
NlaIV	GGNNCC	3 cut(s)	140, 174, 584
NmeAIII	GCCGAG	1 cut(s)	213
NmuCI	GTSAC	2 cut(s)	152, 246
NspI	RCATGY	2 cut(s)	96, 381
PaeI	GCATGC	1 cut(s)	96
PaeR7I	CTCGAG	2 cut(s)	637, 728
PcsI	WCGNNNNNNNCGW	1 cut(s)	705
PctI	GAATGC	2 cut(s)	115, 163
PdiI	GCCGGC	1 cut(s)	754
PfeI	GAWTC	1 cut(s)	58
PkrI	GCNGC	4 cut(s)	20, 23, 134, 621
Ple19I	CGATCG	1 cut(s)	9
Ppu21I	YACGTR	1 cut(s)	589
Psp6I	CCWGG	1 cut(s)	481
PspEI	GGTNACC	1 cut(s)	498
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	3 cut(s)	140, 174, 584
PspXI	VCTCGAGB	2 cut(s)	637, 728
PsuI	RGATCY	1 cut(s)	281
PvuI	CGATCG	1 cut(s)	9
RgaI	GCGATCGC	1 cut(s)	9
RsaI	GTAC	5 cut(s)	47, 584, 635, 713, 784
RsaNI	GTAC	5 cut(s)	46, 583, 634, 712, 783
RseI	CAYNNNNRTG	1 cut(s)	599
SaqAI	TTAA	3 cut(s)	224, 392, 765
SatI	GCNGC	4 cut(s)	19, 22, 133, 620
Sau3AI	GATC	3 cut(s)	6, 232, 281
ScrFI	CCNGG	3 cut(s)	43, 418, 483
SduI	GDGCHC	2 cut(s)	175, 748
SfaAI	GCGATCGC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	403
SfcI	CTRYAG	1 cut(s)	143
Sfr274I	CTCGAG	2 cut(s)	637, 728
SgfI	GCGATCGC	1 cut(s)	9
SlaI	CTCGAG	2 cut(s)	637, 728
SmiMI	CAYNNNNRTG	1 cut(s)	599
SmlI	CTYRAG	2 cut(s)	637, 728
SmoI	CTYRAG	2 cut(s)	637, 728
SphI	GCATGC	1 cut(s)	96
Sse9I	AATT	3 cut(s)	103, 452, 643
SsiI	CCGC	3 cut(s)	22, 653, 695
StyD4I	CCNGG	3 cut(s)	41, 416, 481
StyI	CCWWGG	1 cut(s)	12
TaaI	ACNGT	3 cut(s)	126, 222, 504
TaiI	ACGT	3 cut(s)	212, 591, 717
TaqI	TCGA	2 cut(s)	638, 729
TaqII	GACCGA	1 cut(s)	709
TasI	AATT	3 cut(s)	103, 452, 643
TauI	GCSGC	1 cut(s)	24
TfiI	GAWTC	1 cut(s)	58
Tru1I	TTAA	3 cut(s)	224, 392, 765
Tru9I	TTAA	3 cut(s)	224, 392, 765
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	152, 246
TseI	GCWGC	3 cut(s)	18, 132, 619
Tsp45I	GTSAC	2 cut(s)	152, 246
TspDTI	ATGAA	2 cut(s)	356, 465
TspGWI	ACGGA	2 cut(s)	250, 292
TspRI	CASTG	1 cut(s)	225
XceI	RCATGY	2 cut(s)	96, 381
XhoI	CTCGAG	2 cut(s)	637, 728
XmiI	GTMKAC	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.