Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Forward (+)

1931883 .. 1933950

Gene Structure 2068 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 957 bp

ATGGCGACGGTACCATTGTTCACCCAGTTTCCCTGCAAAACCCTAAATCCAAGCTCATCAAACACTAAACACCAATCGAAATCTCCGATCCTACTACCGATTAACTCAATAAATCGGCGATCGGAGATTGGAGTCTCTGTTCATCGGCCAGATTTCAAAATCCGAGCGACGGACATCGACGACGAATGGGGTCAAGATGGAGTGGAGAGAGTATTTGCCTCATCTTCAACCGTATCGGTAGCAGATAAAGCAATCGAATCCGTGGAGGAGACGGAGAGGCTAAAGAGATCACTAGCGGATTCGTTGTACGGAACAGATCGAGGTTTAAGCGTATCGAGTGATACGAGAGCTGAGATCAGCGAGCTCATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCTAACGAAGCTCTGTTTCTCCTCAACGGCAAATGGATCCTCGCCTACACGTCGTTCGTGGGGTTGTTCCCATTGCTCTCACGAAGAATTGAACCGTTGGTTAAAGTGGATGAGATCTCACAAACCATTGATTCCGATAGCTTCACCGTTCAAAACTCTGTCCGGTTCGCTGGTCCGTTTTCCACAACGTCGTTTAGCACCAACGCTAAGTTTGAAATCCGAAGTCCTAAACGTGTCCAGATTAAGTTCGAGCAAGGTGTTATAGGGACTCCTCAGCTAACGGATTCGATTGAAATACCGGAATCCGTGGAGGTTCTTGGTCAGAAAATCGATCTCAATCCCATTAAAGGTTTACTTACATCAGTCCAAGACACTGCTTCTTCAGTGGCTAGAACCATTTCAAACCAACCACCATTGAAGTTTTCTCTGCCTAGTGACAACACGCAGTCGTGGCTGCTCACAACTTATCTCGACAAGGACCTTCGGATCTCGAGAGGCGATGGTGGAAGCGTCTATGTGCTCATCAAAGAAGGAAGCTCTCTCTTAAACCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

318

Amino Acids

34.95

Weight (kDa)

5.45

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	93 - 308	9.3e-79	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	10
AccB1I	GGYRCC	1 cut(s)	10
AciI	CCGC	1 cut(s)	296
AclWI	GGATC	4 cut(s)	82, 433, 446, 896
AcoI	YGGCCR	1 cut(s)	146
AcuI	CTGAAG	1 cut(s)	768
AfaI	GTAC	2 cut(s)	12, 308
AfiI	CCNNNNNNNGG	2 cut(s)	169, 749
AflIII	ACRYGT	2 cut(s)	450, 634
AgsI	TTSAA	8 cut(s)	157, 228, 494, 554, 617, 695, 804, 820
AjiI	CACGTC	1 cut(s)	453
AloI	GAACNNNNNNTCC	2 cut(s)	123, 155
AluBI	AGCT	9 cut(s)	54, 350, 364, 376, 401, 413, 543, 679, 939
AluI	AGCT	9 cut(s)	54, 350, 364, 376, 401, 413, 543, 679, 939
Alw21I	GWGCWC	2 cut(s)	366, 924
Alw26I	GTCTC	2 cut(s)	139, 263
AlwI	GGATC	4 cut(s)	82, 433, 446, 896
Ama87I	CYCGRG	2 cut(s)	377, 892
AoxI	GGCC	1 cut(s)	146
ApeKI	GCWGC	1 cut(s)	856
Asp700I	GAANNNNTTC	1 cut(s)	799
Asp718I	GGTACC	1 cut(s)	10
AspS9I	GGNCC	2 cut(s)	575, 880
AsuHPI	GGTGA	2 cut(s)	13, 538
AvaI	CYCGRG	2 cut(s)	377, 892
AvaII	GGWCC	2 cut(s)	575, 880
BaeI	ACNNNNGTAYC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	438
BanI	GGYRCC	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	366
Bbv12I	GWGCWC	2 cut(s)	366, 924
BbvCI	CCTCAGC	1 cut(s)	675
BbvI	GCAGC	1 cut(s)	843
BccI	CCATC	2 cut(s)	191, 896
BceAI	ACGGC	1 cut(s)	445
BcoDI	GTCTC	2 cut(s)	139, 263
BfaI	CTAG	3 cut(s)	293, 792, 834
BglII	AGATCT	1 cut(s)	516
BisI	GCNGC	1 cut(s)	857
BlsI	GCNGC	1 cut(s)	858
Bme18I	GGWCC	2 cut(s)	575, 880
BmeT110I	CYCGRG	2 cut(s)	377, 892
BmgBI	CACGTC	1 cut(s)	453
BmgT120I	GGNCC	2 cut(s)	575, 880
BmiI	GGNNCC	2 cut(s)	12, 440
BmrI	ACTGGG	1 cut(s)	19
BmuI	ACTGGG	1 cut(s)	19
BpmI	CTGGAG	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	675
Bsa29I	ATCGAT	1 cut(s)	732
BsaBI	GATNNNNATC	1 cut(s)	738
BsaJI	CCNNGG	2 cut(s)	261, 708
BsaWI	WCCGGW	2 cut(s)	564, 700
BsaXI	ACNNNNNCTCC	4 cut(s)	123, 153, 385, 415
Bsc4I	CCNNNNNNNGG	2 cut(s)	169, 749
Bse1I	ACTGG	1 cut(s)	25
Bse3DI	GCAATG	1 cut(s)	473
Bse8I	GATNNNNATC	1 cut(s)	738
BseCI	ATCGAT	1 cut(s)	732
BseDI	CCNNGG	2 cut(s)	261, 708
BseGI	GGATG	1 cut(s)	517
BseJI	GATNNNNATC	1 cut(s)	738
BseLI	CCNNNNNNNGG	2 cut(s)	169, 749
BseMI	GCAATG	1 cut(s)	473
BseMII	CTCAG	2 cut(s)	342, 689
BseNI	ACTGG	1 cut(s)	25
BseRI	GAGGAG	3 cut(s)	281, 413, 663
BseXI	GCAGC	1 cut(s)	843
Bsh1285I	CGRYCG	1 cut(s)	122
BshFI	GGCC	1 cut(s)	148
BshNI	GGYRCC	1 cut(s)	10
BshVI	ATCGAT	1 cut(s)	732
BsiEI	CGRYCG	1 cut(s)	122
BsiHKAI	GWGCWC	2 cut(s)	366, 924
BsiHKCI	CYCGRG	2 cut(s)	377, 892
BsiSI	CCGG	2 cut(s)	565, 701
BslFI	GGGAC	1 cut(s)	682
BslI	CCNNNNNNNGG	2 cut(s)	169, 749
BsmAI	GTCTC	2 cut(s)	139, 263
BsmBI	CGTCTC	1 cut(s)	263
BsmFI	GGGAC	1 cut(s)	682
BsnI	GGCC	1 cut(s)	148
BsoBI	CYCGRG	2 cut(s)	377, 892
Bsp1286I	GDGCHC	2 cut(s)	366, 924
Bsp143I	GATC	9 cut(s)	87, 119, 287, 316, 354, 438, 516, 733, 888
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	148
BspCNI	CTCAG	2 cut(s)	343, 688
BspDI	ATCGAT	1 cut(s)	732
BspLI	GGNNCC	2 cut(s)	12, 440
BspPI	GGATC	4 cut(s)	82, 433, 446, 896
BspT107I	GGYRCC	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	473
BsrI	ACTGG	1 cut(s)	25
BssECI	CCNNGG	2 cut(s)	261, 708
BssMI	GATC	9 cut(s)	87, 119, 287, 316, 354, 438, 516, 733, 888
Bst4CI	ACNGT	4 cut(s)	10, 232, 498, 550
BstC8I	GCNNGC	1 cut(s)	362
BstDEI	CTNAG	4 cut(s)	351, 384, 609, 675
BstDSI	CCRYGG	2 cut(s)	261, 708
BstF5I	GGATG	1 cut(s)	517
BstKTI	GATC	9 cut(s)	90, 122, 290, 319, 357, 441, 519, 736, 891
BstMAI	GTCTC	2 cut(s)	139, 263
BstMBI	GATC	9 cut(s)	87, 119, 287, 316, 354, 438, 516, 733, 888
BstMCI	CGRYCG	1 cut(s)	122
BstMWI	GCNNNNNNNGC	2 cut(s)	248, 853
BstV1I	GCAGC	1 cut(s)	843
BstX2I	RGATCY	3 cut(s)	438, 516, 888
BstYI	RGATCY	3 cut(s)	438, 516, 888
Bsu15I	ATCGAT	1 cut(s)	732
BsuRI	GGCC	1 cut(s)	148
BsuTUI	ATCGAT	1 cut(s)	732
BtgI	CCRYGG	2 cut(s)	261, 708
BtgZI	GCGATG	1 cut(s)	915
BtrI	CACGTC	1 cut(s)	453
BtsCI	GGATG	1 cut(s)	517
BtsI	GCAGTG	1 cut(s)	774
BtsIMutI	CAGTG	2 cut(s)	774, 792
Cac8I	GCNNGC	1 cut(s)	362
Cfr13I	GGNCC	2 cut(s)	575, 880
ClaI	ATCGAT	1 cut(s)	732
CseI	GACGC	1 cut(s)	901
Csp6I	GTAC	2 cut(s)	11, 307
CviQI	GTAC	2 cut(s)	11, 307
DdeI	CTNAG	4 cut(s)	351, 384, 609, 675
DpnI	GATC	9 cut(s)	89, 121, 289, 318, 356, 440, 518, 735, 890
DpnII	GATC	9 cut(s)	87, 119, 287, 316, 354, 438, 516, 733, 888
EaeI	YGGCCR	1 cut(s)	146
Ecl136II	GAGCTC	1 cut(s)	364
Eco24I	GRGCYC	1 cut(s)	366
Eco47I	GGWCC	2 cut(s)	575, 880
Eco53kI	GAGCTC	1 cut(s)	364
Eco57I	CTGAAG	1 cut(s)	768
Eco88I	CYCGRG	2 cut(s)	377, 892
EcoICRI	GAGCTC	1 cut(s)	364
EcoO109I	RGGNCCY	1 cut(s)	880
EcoT38I	GRGCYC	1 cut(s)	366
Esp3I	CGTCTC	1 cut(s)	263
FaiI	YATR	2 cut(s)	665, 918
FalI	AAGNNNNNCTT	2 cut(s)	741, 773
FaqI	GGGAC	1 cut(s)	682
Fnu4HI	GCNGC	1 cut(s)	857
FokI	GGATG	1 cut(s)	524
FriOI	GRGCYC	1 cut(s)	366
Fsp4HI	GCNGC	1 cut(s)	857
FspBI	CTAG	3 cut(s)	293, 792, 834
GluI	GCNGC	1 cut(s)	857
GsuI	CTGGAG	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	148
HapII	CCGG	2 cut(s)	565, 701
HgaI	GACGC	1 cut(s)	901
HinfI	GANTC	8 cut(s)	132, 257, 299, 380, 533, 670, 686, 704
HpaII	CCGG	2 cut(s)	565, 701
HphI	GGTGA	2 cut(s)	13, 538
Hpy166II	GTNNAC	2 cut(s)	21, 755
Hpy188I	TCNGA	7 cut(s)	87, 124, 164, 538, 623, 726, 888
Hpy188III	TCNNGA	6 cut(s)	194, 483, 640, 872, 892, 894
Hpy8I	GTNNAC	2 cut(s)	21, 755
Hpy99I	CGWCG	6 cut(s)	10, 172, 182, 185, 457, 595
HpyAV	CCTTC	2 cut(s)	893, 926
HpyCH4III	ACNGT	4 cut(s)	10, 232, 498, 550
HpyCH4IV	ACGT	3 cut(s)	452, 590, 634
HpyCH4V	TGCA	1 cut(s)	36
HpyF10VI	GCNNNNNNNGC	2 cut(s)	248, 853
HpyF3I	CTNAG	4 cut(s)	351, 384, 609, 675
HpySE526I	ACGT	3 cut(s)	452, 590, 634
KpnI	GGTACC	1 cut(s)	14
Kzo9I	GATC	9 cut(s)	87, 119, 287, 316, 354, 438, 516, 733, 888
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	8 cut(s)	38, 46, 162, 411, 558, 578, 653, 714
Lsp1109I	GCAGC	1 cut(s)	843
MaeI	CTAG	3 cut(s)	293, 792, 834
MaeII	ACGT	3 cut(s)	452, 590, 634
MaeIII	GTNAC	1 cut(s)	836
MalI	GATC	9 cut(s)	89, 121, 289, 318, 356, 440, 518, 735, 890
MboI	GATC	9 cut(s)	87, 119, 287, 316, 354, 438, 516, 733, 888
MboII	GAAGA	3 cut(s)	216, 498, 774
MflI	RGATCY	3 cut(s)	438, 516, 888
MhlI	GDGCHC	2 cut(s)	366, 924
MluCI	AATT	1 cut(s)	489
MlyI	GAGTC	3 cut(s)	141, 389, 664
MnlI	CCTC	9 cut(s)	229, 259, 270, 314, 434, 452, 684, 706, 890
MroXI	GAANNNNTTC	1 cut(s)	799
MseI	TTAA	7 cut(s)	102, 326, 504, 645, 747, 947, 955
MspI	CCGG	2 cut(s)	565, 701
MwoI	GCNNNNNNNGC	2 cut(s)	248, 853
NdeII	GATC	9 cut(s)	87, 119, 287, 316, 354, 438, 516, 733, 888
NlaIV	GGNNCC	2 cut(s)	12, 440
NmuCI	GTSAC	1 cut(s)	836
PaeR7I	CTCGAG	2 cut(s)	377, 892
PcsI	WCGNNNNNNNCGW	2 cut(s)	83, 341
PdmI	GAANNNNTTC	1 cut(s)	799
PfeI	GAWTC	5 cut(s)	257, 299, 533, 686, 704
PkrI	GCNGC	1 cut(s)	858
Ple19I	CGATCG	1 cut(s)	122
PleI	GAGTC	3 cut(s)	140, 388, 664
PpsI	GAGTC	3 cut(s)	140, 388, 664
PpuMI	RGGWCCY	1 cut(s)	880
Psp124BI	GAGCTC	1 cut(s)	366
Psp5II	RGGWCCY	1 cut(s)	880
PspN4I	GGNNCC	2 cut(s)	12, 440
PspPI	GGNCC	2 cut(s)	575, 880
PspPPI	RGGWCCY	1 cut(s)	880
PspXI	VCTCGAGB	1 cut(s)	377
PsuI	RGATCY	3 cut(s)	438, 516, 888
PvuI	CGATCG	1 cut(s)	122
RsaI	GTAC	2 cut(s)	12, 308
RsaNI	GTAC	2 cut(s)	11, 307
SacI	GAGCTC	1 cut(s)	366
SaqAI	TTAA	7 cut(s)	102, 326, 504, 645, 747, 947, 955
SatI	GCNGC	1 cut(s)	857
Sau3AI	GATC	9 cut(s)	87, 119, 287, 316, 354, 438, 516, 733, 888
Sau96I	GGNCC	2 cut(s)	575, 880
SchI	GAGTC	3 cut(s)	141, 389, 664
SduI	GDGCHC	2 cut(s)	366, 924
Sfr274I	CTCGAG	2 cut(s)	377, 892
SinI	GGWCC	2 cut(s)	575, 880
SlaI	CTCGAG	2 cut(s)	377, 892
SmlI	CTYRAG	2 cut(s)	377, 892
SmoI	CTYRAG	2 cut(s)	377, 892
Sse9I	AATT	1 cut(s)	489
SsiI	CCGC	1 cut(s)	296
SspMI	CTAG	3 cut(s)	293, 792, 834
SstI	GAGCTC	1 cut(s)	366
TaaI	ACNGT	4 cut(s)	10, 232, 498, 550
TaiI	ACGT	3 cut(s)	455, 593, 637
TasI	AATT	1 cut(s)	489
TfiI	GAWTC	5 cut(s)	257, 299, 533, 686, 704
Tru1I	TTAA	7 cut(s)	102, 326, 504, 645, 747, 947, 955
Tru9I	TTAA	7 cut(s)	102, 326, 504, 645, 747, 947, 955
TscAI	CASTG	2 cut(s)	781, 792
TseFI	GTSAC	1 cut(s)	836
TseI	GCWGC	1 cut(s)	856
Tsp45I	GTSAC	1 cut(s)	836
TspDTI	ATGAA	1 cut(s)	131
TspGWI	ACGGA	7 cut(s)	185, 250, 287, 324, 567, 697, 698
TspRI	CASTG	2 cut(s)	781, 792
VpaK11BI	GGWCC	2 cut(s)	575, 880
XhoI	CTCGAG	2 cut(s)	377, 892
XmnI	GAANNNNTTC	1 cut(s)	799
XspI	CTAG	3 cut(s)	293, 792, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.