Rroxscaffold_1G00071280

Plastid-lipid-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0012313
Physical Location & Seq
Forward (+)
92148715 .. 92150013
1299 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00071280.1

Sequence Viewer

Length: 972 bp
ATGGCCTTCGTCTCTCAGCTAAACCAATTCCCCTGCAAGACTCTCTCACCAACTCCACGTCACCCCCGCCTCACCTCCAAGCCTTCAACTTTGGCGCCAAACTCCATCGGACTCGCCACCCCCAAACTGAAACTCTCCAACCCGGAATACCCACAAGCCATCCGACCCGCGACCCGGATCCGAGCTGTTGACGAGGACGAGTCGGCCCCGGAAACCTCGGAGGAGCCGTCCGACGTAGCAGCTGGAGCCGTGGCTGTGGCGGAGAAGCCGGCTGAGCCGGAGGAGATCTCGAAACTGAAGAAGGCTCTGGTGAACGCGTTTTACGGGACTGATCGTGGGCTCAGCGCCACCAGCGAGACCCGGGCCGAGATTGTCGAGCTTATTACCCAATTGGAGGCCCAAAACCCGACTCCGGCTCCGACCGAGGCCTTGCCTCTCCTAAACGGGAAATGGATTCTGGCGTACACATCTTTTGCCGGTTTGTTTCCGTTATTGTCCAGAGGAACTCTTCCTTTGGTGAAGGTTGATGAGGTTTCGCAGACTATCGACTCCCAGAACTTCACAGTTGAAAACTCTGTTCGGTTTTCTGGGCCTTTGGCTACAACTTCTTTCAGCACCAATGCCACATTTGATGTCCGAAGTCCTAAGCGTGTTCAGCTCAAGTTTGAGGAAGGGGTGATTGGCACTCCACAGCTAACAGACTCGCTAGTGATACCAGAAGATGTCGAGTTTTTGGGACAGAAGATAGACCTTGCACCCTTCAAGGGTTTGCTCACCTCTGTCCAAGACACTGCTTCCTCGGTTGCAAAGTCCATCTCCAGCCAACCCCCGTTTAAGTTTTCGATCTCAAGTAGCAAGGCCGAATCGTGGTTGCTTACCACATACCTTGATCAAGAGCTTCGGATTTCGAGGGGAGACAATGGCAGTGTGTTTGTGCTCATCAAGGAAGCCAGCTCCCTTTTGACTCCTTGA

Protein Analysis

323

Amino Acids

34.85

Weight (kDa)

5.13

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 98 - 313 4.4e-79 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012313)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G04020 AT4G22240
fragaria_vesca FvH4_3g01310
malus_domestica MD10G1327900.v1.1
prunus_persica Prupe.4G014000_v2.0.a1
pyrus_communis pycom10g27770
rosa_chinensis RchiOBHm_Chr5g0001851
rosa_laevigata RLG00000030965 RLG00000030977
rosa_multiflora Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa Rorug04G0393600
rosa_samantha Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana Rw5G001430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 94
AccII CGCG 2 cut(s) 170, 317
AciI CCGC 3 cut(s) 67, 168, 260
AclWI GGATC 2 cut(s) 172, 185
AcuI CTGAAG 1 cut(s) 317
AcyI GRCGYC 1 cut(s) 95
AfaI GTAC 1 cut(s) 464
AfiI CCNNNNNNNGG 5 cut(s) 174, 394, 412, 764, 867
AflIII ACRYGT 1 cut(s) 315
AgsI TTSAA 3 cut(s) 87, 569, 763
AjiI CACGTC 1 cut(s) 59
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
AluBI AGCT 8 cut(s) 19, 185, 242, 379, 658, 694, 898, 954
AluI AGCT 8 cut(s) 19, 185, 242, 379, 658, 694, 898, 954
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 3 cut(s) 16, 350, 909
AlwI GGATC 2 cut(s) 172, 185
Ama87I CYCGRG 1 cut(s) 360
AoxI GGCC 7 cut(s) 3, 204, 363, 396, 426, 590, 858
ApeKI GCWGC 1 cut(s) 239
AspLEI GCGC 2 cut(s) 97, 347
AspS9I GGNCC 4 cut(s) 205, 363, 397, 590
AsuC2I CCSGG 5 cut(s) 143, 175, 209, 361, 362
AsuHPI GGTGA 7 cut(s) 39, 53, 64, 322, 529, 688, 766
AvaI CYCGRG 1 cut(s) 360
BamHI GGATCC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 94
BanII GRGCYC 1 cut(s) 342
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 1 cut(s) 251
BccI CCATC 3 cut(s) 113, 167, 821
BceAI ACGGC 2 cut(s) 211, 233
BclI TGATCA 1 cut(s) 889
BcnI CCSGG 5 cut(s) 143, 175, 209, 361, 362
BcoDI GTCTC 3 cut(s) 16, 350, 909
BfaI CTAG 1 cut(s) 707
BfoI RGCGCY 2 cut(s) 98, 348
BglII AGATCT 1 cut(s) 285
BisI GCNGC 1 cut(s) 240
BlpI GCTNAGC 2 cut(s) 273, 341
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 5 cut(s) 143, 175, 209, 361, 362
BmeT110I CYCGRG 1 cut(s) 360
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 4 cut(s) 205, 363, 397, 590
BmiI GGNNCC 6 cut(s) 96, 179, 207, 225, 247, 417
BmrFI CCNGG 5 cut(s) 143, 175, 209, 361, 362
BplI GAGNNNNNCTC 2 cut(s) 272, 304
BpmI CTGGAG 2 cut(s) 264, 802
Bpu10I CCTNAGC 1 cut(s) 645
Bpu1102I GCTNAGC 2 cut(s) 273, 341
BpuEI CTTGAG 2 cut(s) 644, 832
BpuMI CCSGG 5 cut(s) 143, 175, 209, 361, 362
BsaHI GRCGYC 1 cut(s) 95
BsaI GGTCTC 1 cut(s) 350
BsaJI CCNNGG 6 cut(s) 207, 216, 249, 360, 423, 798
BsaXI ACNNNNNCTCC 4 cut(s) 212, 242, 400, 430
Bsc4I CCNNNNNNNGG 5 cut(s) 174, 394, 412, 764, 867
Bse118I RCCGGY 2 cut(s) 268, 476
BseDI CCNNGG 6 cut(s) 207, 216, 249, 360, 423, 798
BseGI GGATG 1 cut(s) 159
BseLI CCNNNNNNNGG 5 cut(s) 174, 394, 412, 764, 867
BseMII CTCAG 3 cut(s) 29, 264, 355
BseRI GAGGAG 2 cut(s) 236, 296
BseXI GCAGC 1 cut(s) 251
Bsh1236I CGCG 2 cut(s) 170, 317
Bsh1285I CGRYCG 1 cut(s) 423
BshFI GGCC 7 cut(s) 5, 206, 365, 398, 428, 592, 860
BshNI GGYRCC 1 cut(s) 94
BsiEI CGRYCG 1 cut(s) 423
BsiHKAI GWGCWC 1 cut(s) 939
BsiHKCI CYCGRG 1 cut(s) 360
BsiSI CCGG 8 cut(s) 143, 175, 209, 269, 278, 361, 413, 477
BslFI GGGAC 2 cut(s) 340, 750
BslI CCNNNNNNNGG 5 cut(s) 174, 394, 412, 764, 867
BsmAI GTCTC 3 cut(s) 16, 350, 909
BsmBI CGTCTC 1 cut(s) 16
BsmFI GGGAC 2 cut(s) 340, 750
BsnI GGCC 7 cut(s) 5, 206, 365, 398, 428, 592, 860
Bso31I GGTCTC 1 cut(s) 350
BsoBI CYCGRG 1 cut(s) 360
Bsp1286I GDGCHC 2 cut(s) 342, 939
Bsp143I GATC 5 cut(s) 177, 285, 331, 843, 889
Bsp1720I GCTNAGC 2 cut(s) 273, 341
BspACI CCGC 3 cut(s) 67, 168, 260
BspANI GGCC 7 cut(s) 5, 206, 365, 398, 428, 592, 860
BspCNI CTCAG 3 cut(s) 28, 265, 354
BspFNI CGCG 2 cut(s) 170, 317
BspLI GGNNCC 6 cut(s) 96, 179, 207, 225, 247, 417
BspPI GGATC 2 cut(s) 172, 185
BspT107I GGYRCC 1 cut(s) 94
BspTNI GGTCTC 1 cut(s) 350
BsrFI RCCGGY 2 cut(s) 268, 476
BssAI RCCGGY 2 cut(s) 268, 476
BssECI CCNNGG 6 cut(s) 207, 216, 249, 360, 423, 798
BssMI GATC 5 cut(s) 177, 285, 331, 843, 889
BssNI GRCGYC 1 cut(s) 95
Bst4CI ACNGT 1 cut(s) 565
Bst6I CTCTTC 1 cut(s) 513
BstACI GRCGYC 1 cut(s) 95
BstC8I GCNNGC 2 cut(s) 270, 952
BstDEI CTNAG 4 cut(s) 15, 273, 341, 645
BstDSI CCRYGG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 159
BstFNI CGCG 2 cut(s) 170, 317
BstH2I RGCGCY 2 cut(s) 98, 348
BstHHI GCGC 2 cut(s) 97, 347
BstKTI GATC 5 cut(s) 180, 288, 334, 846, 892
BstMAI GTCTC 3 cut(s) 16, 350, 909
BstMBI GATC 5 cut(s) 177, 285, 331, 843, 889
BstMCI CGRYCG 1 cut(s) 423
BstMWI GCNNNNNNNGC 4 cut(s) 245, 274, 351, 655
BstSCI CCNGG 5 cut(s) 141, 173, 207, 359, 360
BstUI CGCG 2 cut(s) 170, 317
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 2 cut(s) 177, 285
BstYI RGATCY 2 cut(s) 177, 285
BsuRI GGCC 7 cut(s) 5, 206, 365, 398, 428, 592, 860
BtgI CCRYGG 1 cut(s) 249
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 1 cut(s) 159
BtsI GCAGTG 2 cut(s) 789, 931
BtsIMutI CAGTG 2 cut(s) 789, 931
Cac8I GCNNGC 2 cut(s) 270, 952
CfoI GCGC 2 cut(s) 97, 347
Cfr10I RCCGGY 2 cut(s) 268, 476
Cfr13I GGNCC 4 cut(s) 205, 363, 397, 590
Cfr9I CCCGGG 1 cut(s) 360
Csp6I GTAC 1 cut(s) 463
CspCI CAANNNNNGTGG 2 cut(s) 868, 903
CviQI GTAC 1 cut(s) 463
DdeI CTNAG 4 cut(s) 15, 273, 341, 645
DinI GGCGCC 1 cut(s) 96
DpnI GATC 5 cut(s) 179, 287, 333, 845, 891
DpnII GATC 5 cut(s) 177, 285, 331, 843, 889
Eam1104I CTCTTC 1 cut(s) 513
EarI CTCTTC 1 cut(s) 513
EciI GGCGGA 1 cut(s) 275
Eco147I AGGCCT 1 cut(s) 428
Eco24I GRGCYC 1 cut(s) 342
Eco31I GGTCTC 1 cut(s) 350
Eco57I CTGAAG 1 cut(s) 317
Eco88I CYCGRG 1 cut(s) 360
EcoT38I GRGCYC 1 cut(s) 342
EgeI GGCGCC 1 cut(s) 96
EheI GGCGCC 1 cut(s) 96
Esp3I CGTCTC 1 cut(s) 16
FaiI YATR 1 cut(s) 883
FaqI GGGAC 2 cut(s) 340, 750
FauI CCCGC 2 cut(s) 74, 175
FbaI TGATCA 1 cut(s) 889
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 342
Fsp4HI GCNGC 1 cut(s) 240
FspBI CTAG 1 cut(s) 707
GlaI GCGC 2 cut(s) 96, 346
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 2 cut(s) 264, 802
HaeII RGCGCY 2 cut(s) 98, 348
HaeIII GGCC 7 cut(s) 5, 206, 365, 398, 428, 592, 860
HapII CCGG 8 cut(s) 143, 175, 209, 269, 278, 361, 413, 477
HhaI GCGC 2 cut(s) 97, 347
Hin1I GRCGYC 1 cut(s) 95
Hin6I GCGC 2 cut(s) 95, 345
HinP1I GCGC 2 cut(s) 95, 345
HincII GTYRAC 1 cut(s) 190
HindII GTYRAC 1 cut(s) 190
HinfI GANTC 9 cut(s) 40, 111, 200, 409, 454, 548, 701, 863, 964
HpaII CCGG 8 cut(s) 143, 175, 209, 269, 278, 361, 413, 477
HphI GGTGA 7 cut(s) 39, 53, 64, 322, 529, 688, 766
Hpy166II GTNNAC 3 cut(s) 190, 313, 465
Hpy188I TCNGA 8 cut(s) 110, 164, 182, 220, 232, 420, 638, 903
Hpy188III TCNNGA 3 cut(s) 289, 498, 893
Hpy8I GTNNAC 3 cut(s) 190, 313, 465
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 6 cut(s) 16, 93, 295, 514, 665, 769
HpyCH4III ACNGT 1 cut(s) 565
HpyCH4IV ACGT 2 cut(s) 58, 234
HpyCH4V TGCA 3 cut(s) 36, 755, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 245, 274, 351, 655
HpyF3I CTNAG 4 cut(s) 15, 273, 341, 645
HpySE526I ACGT 2 cut(s) 58, 234
Hsp92I GRCGYC 1 cut(s) 95
HspAI GCGC 2 cut(s) 95, 345
KasI GGCGCC 1 cut(s) 94
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
Ksp22I TGATCA 1 cut(s) 889
Kzo9I GATC 5 cut(s) 177, 285, 331, 843, 889
LmnI GCTCC 4 cut(s) 223, 245, 421, 959
Lsp1109I GCAGC 1 cut(s) 251
MaeI CTAG 1 cut(s) 707
MaeII ACGT 2 cut(s) 58, 234
MaeIII GTNAC 1 cut(s) 59
MalI GATC 5 cut(s) 179, 287, 333, 845, 891
MboI GATC 5 cut(s) 177, 285, 331, 843, 889
MboII GAAGA 4 cut(s) 310, 500, 731, 754
MfeI CAATTG 1 cut(s) 389
MflI RGATCY 2 cut(s) 177, 285
MhlI GDGCHC 2 cut(s) 342, 939
MluCI AATT 2 cut(s) 26, 389
MluI ACGCGT 1 cut(s) 315
Mly113I GGCGCC 1 cut(s) 95
MlyI GAGTC 7 cut(s) 34, 105, 209, 403, 542, 695, 958
MmeI TCCRAC 4 cut(s) 162, 187, 255, 443
MroNI GCCGGC 1 cut(s) 268
MseI TTAA 1 cut(s) 834
MspA1I CMGCKG 1 cut(s) 242
MspI CCGG 8 cut(s) 143, 175, 209, 269, 278, 361, 413, 477
MspR9I CCNGG 5 cut(s) 143, 175, 209, 361, 362
MunI CAATTG 1 cut(s) 389
MvnI CGCG 2 cut(s) 170, 317
MwoI GCNNNNNNNGC 4 cut(s) 245, 274, 351, 655
NaeI GCCGGC 1 cut(s) 270
NarI GGCGCC 1 cut(s) 95
NciI CCSGG 5 cut(s) 143, 175, 209, 361, 362
NdeII GATC 5 cut(s) 177, 285, 331, 843, 889
NgoMIV GCCGGC 1 cut(s) 268
NlaIV GGNNCC 6 cut(s) 96, 179, 207, 225, 247, 417
NmeAIII GCCGAG 1 cut(s) 391
NmuCI GTSAC 1 cut(s) 59
PceI AGGCCT 1 cut(s) 428
PcsI WCGNNNNNNNCGW 1 cut(s) 224
PdiI GCCGGC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 454, 863
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 7 cut(s) 34, 105, 208, 403, 542, 695, 958
PluTI GGCGCC 1 cut(s) 98
PpsI GAGTC 7 cut(s) 34, 105, 208, 403, 542, 695, 958
PspN4I GGNNCC 6 cut(s) 96, 179, 207, 225, 247, 417
PspPI GGNCC 4 cut(s) 205, 363, 397, 590
PsrI GAACNNNNNNTAC 2 cut(s) 305, 337
PsuI RGATCY 2 cut(s) 177, 285
PvuII CAGCTG 1 cut(s) 242
RsaI GTAC 1 cut(s) 464
RsaNI GTAC 1 cut(s) 463
SaqAI TTAA 1 cut(s) 834
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 5 cut(s) 177, 285, 331, 843, 889
Sau96I GGNCC 4 cut(s) 205, 363, 397, 590
SchI GAGTC 7 cut(s) 34, 105, 209, 403, 542, 695, 958
ScrFI CCNGG 5 cut(s) 143, 175, 209, 361, 362
SduI GDGCHC 2 cut(s) 342, 939
SfoI GGCGCC 1 cut(s) 96
SmaI CCCGGG 1 cut(s) 362
SmlI CTYRAG 2 cut(s) 659, 847
SmoI CTYRAG 2 cut(s) 659, 847
Sse9I AATT 2 cut(s) 26, 389
SseBI AGGCCT 1 cut(s) 428
SsiI CCGC 3 cut(s) 67, 168, 260
SspDI GGCGCC 1 cut(s) 94
SspMI CTAG 1 cut(s) 707
StuI AGGCCT 1 cut(s) 428
StyD4I CCNGG 5 cut(s) 141, 173, 207, 359, 360
TaaI ACNGT 1 cut(s) 565
TaiI ACGT 2 cut(s) 61, 237
TaqI TCGA 6 cut(s) 290, 375, 546, 726, 842, 908
TaqII GACCGA 1 cut(s) 437
TasI AATT 2 cut(s) 26, 389
TfiI GAWTC 2 cut(s) 454, 863
Tru1I TTAA 1 cut(s) 834
Tru9I TTAA 1 cut(s) 834
TscAI CASTG 2 cut(s) 796, 931
TseFI GTSAC 1 cut(s) 59
TseI GCWGC 1 cut(s) 239
Tsp45I GTSAC 1 cut(s) 59
TspGWI ACGGA 1 cut(s) 477
TspMI CCCGGG 1 cut(s) 360
TspRI CASTG 2 cut(s) 796, 931
XmaI CCCGGG 1 cut(s) 360
XspI CTAG 1 cut(s) 707
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.