Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Forward (+)

944051 .. 945222

Gene Structure 1172 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030965

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGTAGCAAACCACAAATATATATTACAAACTTGATTGTTTTGCTTGGTAATGGGATAACAAACAGGAGAAAAGCCATCAGACTCGCCACCCCCAAATTGAAACTCTCCAACCCGGAATACCCATGGGCCGTCCGATCCGCGACCAGGATCCGAGCCCAGGACGAGGACGAGCCTGCCCCGGAAACCTCGGAGGAGCCGTCCGACGTGGCAGCTGGAGCCGTGGCTGTGGCGGAGAAGCCGGCTGAGCCGGAGGAGATCTCGAAACTGAAGAAGGCTCTGGTGGACGCGTTTTACGGGACTGATCGTGGGCTCAGCGCCACCAGCGAGACCCGGGCCGAGATTGTCGAGCTTATTACCCAATTGGAGGCCCAAAACCCGACTCCGGCTCCGACCGAGGCCTTGCCTCTCCTAAACGGGAAATGGATTCTGGCGTACACATCATTTGCCGGTTTGTTTCCGTTGTTGTCCAGAGGAACTCTTCCTTTGGTGAAGGTTGATGAGGTTTCGCAGACTATCGACTCCCAGAACTTCACAGTGGAAAACTCTGTTCGGTTTTCCGGGCCTTTGGCCACAACTTCTTTCAGCACAAATGCCACATTTGATGTCCGAAGTCCTAAGCGTGTTCAGCTCAAGTTTGAGGAAGGGGTGATTGGCACTCCACAGCTAACAGACTCGCTAGTGATACCAGAAGATGTTGAGTTTTTGGGACAGAAGATAGACCTCGCACCCTTCAAGGGTTTGCTCACCTCCGTCCAAGACACTGCTTCCTCGGTTGCAAAGTCCATCTCCAGCCAACCCCCGTTTAAGTTTTCGATCTCAAGTAGCAAGGCCGAATCGTGGTTGCTAACCACATACCTTGATCAAGAGCTTCGGATTTCTAGGGGAGACAATGGCAGTGTGTTTGTGCTCATCAAGGAAGGCAGCTCCCTTTTGACTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

315

Amino Acids

34.05

Weight (kDa)

5.06

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	89 - 304	1e-79	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	143, 290
AciI	CCGC	2 cut(s)	141, 233
AclWI	GGATC	3 cut(s)	132, 145, 158
AcoI	YGGCCR	1 cut(s)	570
AcuI	CTGAAG	1 cut(s)	290
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	7 cut(s)	147, 160, 166, 367, 385, 737, 840
AflIII	ACRYGT	1 cut(s)	288
AgsI	TTSAA	2 cut(s)	103, 736
AjiI	CACGTC	1 cut(s)	208
AjnI	CCWGG	2 cut(s)	146, 159
AjuI	GAANNNNNNNTTGG	2 cut(s)	636, 668
AluBI	AGCT	6 cut(s)	215, 352, 631, 667, 871, 927
AluI	AGCT	6 cut(s)	215, 352, 631, 667, 871, 927
Alw21I	GWGCWC	1 cut(s)	912
Alw26I	GTCTC	2 cut(s)	323, 882
AlwI	GGATC	3 cut(s)	132, 145, 158
Ama87I	CYCGRG	1 cut(s)	333
AoxI	GGCC	7 cut(s)	129, 336, 369, 399, 563, 570, 831
ApeKI	GCWGC	2 cut(s)	212, 924
AspLEI	GCGC	1 cut(s)	320
AspS9I	GGNCC	4 cut(s)	129, 336, 370, 563
AsuC2I	CCSGG	5 cut(s)	116, 182, 334, 335, 562
AsuHPI	GGTGA	3 cut(s)	502, 661, 739
AvaI	CYCGRG	1 cut(s)	333
BalI	TGGCCA	1 cut(s)	572
BamHI	GGATCC	1 cut(s)	150
BanII	GRGCYC	2 cut(s)	160, 315
Bbv12I	GWGCWC	1 cut(s)	912
BbvI	GCAGC	2 cut(s)	224, 936
BccI	CCATC	2 cut(s)	86, 794
BceAI	ACGGC	3 cut(s)	116, 184, 206
BciT130I	CCWGG	2 cut(s)	148, 161
BclI	TGATCA	1 cut(s)	862
BcnI	CCSGG	5 cut(s)	116, 182, 334, 335, 562
BcoDI	GTCTC	2 cut(s)	323, 882
BfaI	CTAG	2 cut(s)	680, 882
BfoI	RGCGCY	1 cut(s)	321
BglII	AGATCT	1 cut(s)	258
BisI	GCNGC	2 cut(s)	213, 925
BlpI	GCTNAGC	2 cut(s)	246, 314
BlsI	GCNGC	2 cut(s)	214, 926
Bme1390I	CCNGG	7 cut(s)	116, 148, 161, 182, 334, 335, 562
BmeT110I	CYCGRG	1 cut(s)	333
BmgBI	CACGTC	1 cut(s)	208
BmgT120I	GGNCC	4 cut(s)	129, 336, 370, 563
BmiI	GGNNCC	4 cut(s)	152, 198, 220, 390
BmrFI	CCNGG	7 cut(s)	116, 148, 161, 182, 334, 335, 562
BplI	GAGNNNNNCTC	2 cut(s)	245, 277
BpmI	CTGGAG	2 cut(s)	237, 775
Bpu10I	CCTNAGC	1 cut(s)	618
Bpu1102I	GCTNAGC	2 cut(s)	246, 314
BpuEI	CTTGAG	2 cut(s)	617, 805
BpuMI	CCSGG	5 cut(s)	116, 182, 334, 335, 562
BsaI	GGTCTC	1 cut(s)	323
BsaJI	CCNNGG	8 cut(s)	125, 159, 180, 189, 222, 333, 396, 771
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 373, 403
Bsc4I	CCNNNNNNNGG	7 cut(s)	147, 160, 166, 367, 385, 737, 840
Bse118I	RCCGGY	2 cut(s)	241, 449
BseBI	CCWGG	2 cut(s)	148, 161
BseDI	CCNNGG	8 cut(s)	125, 159, 180, 189, 222, 333, 396, 771
BseLI	CCNNNNNNNGG	7 cut(s)	147, 160, 166, 367, 385, 737, 840
BseMII	CTCAG	2 cut(s)	237, 328
BseRI	GAGGAG	2 cut(s)	209, 269
BseXI	GCAGC	2 cut(s)	224, 936
Bsh1236I	CGCG	2 cut(s)	143, 290
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	7 cut(s)	131, 338, 371, 401, 565, 572, 833
BsiEI	CGRYCG	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	912
BsiHKCI	CYCGRG	1 cut(s)	333
BsiSI	CCGG	8 cut(s)	116, 182, 242, 251, 334, 386, 450, 561
BslFI	GGGAC	2 cut(s)	313, 723
BslI	CCNNNNNNNGG	7 cut(s)	147, 160, 166, 367, 385, 737, 840
BsmAI	GTCTC	2 cut(s)	323, 882
BsmFI	GGGAC	2 cut(s)	313, 723
BsnI	GGCC	7 cut(s)	131, 338, 371, 401, 565, 572, 833
Bso31I	GGTCTC	1 cut(s)	323
BsoBI	CYCGRG	1 cut(s)	333
Bsp1286I	GDGCHC	3 cut(s)	160, 315, 912
Bsp143I	GATC	6 cut(s)	137, 150, 258, 304, 816, 862
Bsp1720I	GCTNAGC	2 cut(s)	246, 314
Bsp19I	CCATGG	1 cut(s)	125
BspACI	CCGC	2 cut(s)	141, 233
BspANI	GGCC	7 cut(s)	131, 338, 371, 401, 565, 572, 833
BspCNI	CTCAG	2 cut(s)	238, 327
BspFNI	CGCG	2 cut(s)	143, 290
BspLI	GGNNCC	4 cut(s)	152, 198, 220, 390
BspPI	GGATC	3 cut(s)	132, 145, 158
BspTNI	GGTCTC	1 cut(s)	323
BsrFI	RCCGGY	2 cut(s)	241, 449
BssAI	RCCGGY	2 cut(s)	241, 449
BssECI	CCNNGG	8 cut(s)	125, 159, 180, 189, 222, 333, 396, 771
BssMI	GATC	6 cut(s)	137, 150, 258, 304, 816, 862
BssT1I	CCWWGG	1 cut(s)	125
Bst2UI	CCWGG	2 cut(s)	148, 161
Bst4CI	ACNGT	1 cut(s)	538
Bst6I	CTCTTC	1 cut(s)	486
BstC8I	GCNNGC	2 cut(s)	177, 243
BstDEI	CTNAG	3 cut(s)	246, 314, 618
BstDSI	CCRYGG	2 cut(s)	125, 222
BstFNI	CGCG	2 cut(s)	143, 290
BstH2I	RGCGCY	1 cut(s)	321
BstHHI	GCGC	1 cut(s)	320
BstKTI	GATC	6 cut(s)	140, 153, 261, 307, 819, 865
BstMAI	GTCTC	2 cut(s)	323, 882
BstMBI	GATC	6 cut(s)	137, 150, 258, 304, 816, 862
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	4 cut(s)	218, 247, 324, 628
BstNI	CCWGG	2 cut(s)	148, 161
BstSCI	CCNGG	7 cut(s)	114, 146, 159, 180, 332, 333, 560
BstUI	CGCG	2 cut(s)	143, 290
BstV1I	GCAGC	2 cut(s)	224, 936
BstX2I	RGATCY	2 cut(s)	150, 258
BstYI	RGATCY	2 cut(s)	150, 258
BsuRI	GGCC	7 cut(s)	131, 338, 371, 401, 565, 572, 833
BtgI	CCRYGG	2 cut(s)	125, 222
BtrI	CACGTC	1 cut(s)	208
BtsI	GCAGTG	2 cut(s)	762, 904
BtsIMutI	CAGTG	3 cut(s)	543, 762, 904
Cac8I	GCNNGC	2 cut(s)	177, 243
CfoI	GCGC	1 cut(s)	320
Cfr10I	RCCGGY	2 cut(s)	241, 449
Cfr13I	GGNCC	4 cut(s)	129, 336, 370, 563
Cfr9I	CCCGGG	1 cut(s)	333
CseI	GACGC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	436
CspCI	CAANNNNNGTGG	2 cut(s)	841, 876
CviAII	CATG	1 cut(s)	126
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	246, 314, 618
DpnI	GATC	6 cut(s)	139, 152, 260, 306, 818, 864
DpnII	GATC	6 cut(s)	137, 150, 258, 304, 816, 862
EaeI	YGGCCR	1 cut(s)	570
Eam1104I	CTCTTC	1 cut(s)	486
EarI	CTCTTC	1 cut(s)	486
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	1 cut(s)	125
Eco147I	AGGCCT	1 cut(s)	401
Eco24I	GRGCYC	2 cut(s)	160, 315
Eco31I	GGTCTC	1 cut(s)	323
Eco57I	CTGAAG	1 cut(s)	290
Eco88I	CYCGRG	1 cut(s)	333
EcoRII	CCWGG	2 cut(s)	146, 159
EcoT14I	CCWWGG	1 cut(s)	125
EcoT38I	GRGCYC	2 cut(s)	160, 315
ErhI	CCWWGG	1 cut(s)	125
FaeI	CATG	1 cut(s)	129
FaiI	YATR	4 cut(s)	22, 24, 127, 856
FaqI	GGGAC	2 cut(s)	313, 723
FatI	CATG	1 cut(s)	125
FbaI	TGATCA	1 cut(s)	862
Fnu4HI	GCNGC	2 cut(s)	213, 925
FriOI	GRGCYC	2 cut(s)	160, 315
Fsp4HI	GCNGC	2 cut(s)	213, 925
FspBI	CTAG	2 cut(s)	680, 882
GlaI	GCGC	1 cut(s)	319
GluI	GCNGC	2 cut(s)	213, 925
GsuI	CTGGAG	2 cut(s)	237, 775
HaeII	RGCGCY	1 cut(s)	321
HaeIII	GGCC	7 cut(s)	131, 338, 371, 401, 565, 572, 833
HapII	CCGG	8 cut(s)	116, 182, 242, 251, 334, 386, 450, 561
HgaI	GACGC	1 cut(s)	296
HhaI	GCGC	1 cut(s)	320
Hin1II	CATG	1 cut(s)	129
Hin6I	GCGC	1 cut(s)	318
HinP1I	GCGC	1 cut(s)	318
HinfI	GANTC	7 cut(s)	84, 382, 427, 521, 674, 836, 937
HpaII	CCGG	8 cut(s)	116, 182, 242, 251, 334, 386, 450, 561
HphI	GGTGA	3 cut(s)	502, 661, 739
Hpy166II	GTNNAC	2 cut(s)	286, 438
Hpy188I	TCNGA	8 cut(s)	83, 137, 155, 193, 205, 393, 611, 876
Hpy188III	TCNNGA	3 cut(s)	262, 471, 866
Hpy8I	GTNNAC	2 cut(s)	286, 438
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	5 cut(s)	268, 487, 638, 742, 914
HpyCH4III	ACNGT	1 cut(s)	538
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	1 cut(s)	779
HpyF10VI	GCNNNNNNNGC	4 cut(s)	218, 247, 324, 628
HpyF3I	CTNAG	3 cut(s)	246, 314, 618
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	1 cut(s)	129
HspAI	GCGC	1 cut(s)	318
KroI	GCCGGC	1 cut(s)	241
KroNI	GCCGGC	1 cut(s)	243
Ksp22I	TGATCA	1 cut(s)	862
Kzo9I	GATC	6 cut(s)	137, 150, 258, 304, 816, 862
LmnI	GCTCC	4 cut(s)	196, 218, 394, 932
Lsp1109I	GCAGC	2 cut(s)	224, 936
MaeI	CTAG	2 cut(s)	680, 882
MaeII	ACGT	1 cut(s)	207
MalI	GATC	6 cut(s)	139, 152, 260, 306, 818, 864
MboI	GATC	6 cut(s)	137, 150, 258, 304, 816, 862
MboII	GAAGA	4 cut(s)	283, 473, 704, 727
MfeI	CAATTG	1 cut(s)	362
MflI	RGATCY	2 cut(s)	150, 258
MhlI	GDGCHC	3 cut(s)	160, 315, 912
MlsI	TGGCCA	1 cut(s)	572
MluCI	AATT	2 cut(s)	98, 362
MluI	ACGCGT	1 cut(s)	288
MluNI	TGGCCA	1 cut(s)	572
MlyI	GAGTC	5 cut(s)	78, 376, 515, 668, 931
MmeI	TCCRAC	3 cut(s)	135, 228, 416
Mox20I	TGGCCA	1 cut(s)	572
MroNI	GCCGGC	1 cut(s)	241
MscI	TGGCCA	1 cut(s)	572
MseI	TTAA	1 cut(s)	807
Msp20I	TGGCCA	1 cut(s)	572
MspA1I	CMGCKG	1 cut(s)	215
MspI	CCGG	8 cut(s)	116, 182, 242, 251, 334, 386, 450, 561
MspR9I	CCNGG	7 cut(s)	116, 148, 161, 182, 334, 335, 562
MunI	CAATTG	1 cut(s)	362
MvaI	CCWGG	2 cut(s)	148, 161
MvnI	CGCG	2 cut(s)	143, 290
MwoI	GCNNNNNNNGC	4 cut(s)	218, 247, 324, 628
NaeI	GCCGGC	1 cut(s)	243
NciI	CCSGG	5 cut(s)	116, 182, 334, 335, 562
NcoI	CCATGG	1 cut(s)	125
NdeII	GATC	6 cut(s)	137, 150, 258, 304, 816, 862
NgoMIV	GCCGGC	1 cut(s)	241
NlaIII	CATG	1 cut(s)	129
NlaIV	GGNNCC	4 cut(s)	152, 198, 220, 390
NmeAIII	GCCGAG	1 cut(s)	364
PceI	AGGCCT	1 cut(s)	401
PcsI	WCGNNNNNNNCGW	1 cut(s)	197
PdiI	GCCGGC	1 cut(s)	243
PfeI	GAWTC	2 cut(s)	427, 836
PkrI	GCNGC	2 cut(s)	214, 926
PleI	GAGTC	5 cut(s)	78, 376, 515, 668, 931
PpsI	GAGTC	5 cut(s)	78, 376, 515, 668, 931
Psp6I	CCWGG	2 cut(s)	146, 159
PspGI	CCWGG	2 cut(s)	146, 159
PspN4I	GGNNCC	4 cut(s)	152, 198, 220, 390
PspPI	GGNCC	4 cut(s)	129, 336, 370, 563
PsuI	RGATCY	2 cut(s)	150, 258
PvuII	CAGCTG	1 cut(s)	215
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
SaqAI	TTAA	1 cut(s)	807
SatI	GCNGC	2 cut(s)	213, 925
Sau3AI	GATC	6 cut(s)	137, 150, 258, 304, 816, 862
Sau96I	GGNCC	4 cut(s)	129, 336, 370, 563
SchI	GAGTC	5 cut(s)	78, 376, 515, 668, 931
ScrFI	CCNGG	7 cut(s)	116, 148, 161, 182, 334, 335, 562
SduI	GDGCHC	3 cut(s)	160, 315, 912
SmaI	CCCGGG	1 cut(s)	335
SmlI	CTYRAG	2 cut(s)	632, 820
SmoI	CTYRAG	2 cut(s)	632, 820
Sse9I	AATT	2 cut(s)	98, 362
SseBI	AGGCCT	1 cut(s)	401
SsiI	CCGC	2 cut(s)	141, 233
SspMI	CTAG	2 cut(s)	680, 882
StuI	AGGCCT	1 cut(s)	401
StyD4I	CCNGG	7 cut(s)	114, 146, 159, 180, 332, 333, 560
StyI	CCWWGG	1 cut(s)	125
TaaI	ACNGT	1 cut(s)	538
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	263, 348, 519, 815
TaqII	GACCGA	1 cut(s)	410
TasI	AATT	2 cut(s)	98, 362
TfiI	GAWTC	2 cut(s)	427, 836
Tru1I	TTAA	1 cut(s)	807
Tru9I	TTAA	1 cut(s)	807
TscAI	CASTG	3 cut(s)	543, 769, 904
TseI	GCWGC	2 cut(s)	212, 924
TspGWI	ACGGA	2 cut(s)	450, 742
TspMI	CCCGGG	1 cut(s)	333
TspRI	CASTG	3 cut(s)	543, 769, 904
XmaI	CCCGGG	1 cut(s)	333
XspI	CTAG	2 cut(s)	680, 882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.