Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8379131.1

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Reverse (-)

37 .. 1159

Gene Structure 1123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8379131.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 903 bp

acctccaagcctttaactactttggcgccaaactccgtcggactcgccacccccaaattgacactctccaacccggaatacccacaagccatccgacccgcgacccggatccgagccattgacgaggacgagtcggccccggaaacctcggaggagccgtccggcgtggcagctggagccgtggctgtggcggagaagccggctgagccggaggagatctcgaaactgaagaaggttctggtggacgcgttttacgggactgatcttgggctcagcgccaccagcgagacccgggccgagattgtagagcttattacccaattggaggtccaaaacccgactccggctccgaccgaggccttgcctctccttaacgggaaatggattctggcgtacacatcttttgctggtttgtttccgttattgtccagaggaactcttcctttggtgaaggttgatgaggtttcgcagactatcgactcccagaacttcacagttgaaaactctgttcggttttccgggcctttggctacaacttctttcagcaccaatgccacttttgatgtccgaagtcctaagtgtgttcagctcaagtttgaggaaggggtgattggcactccacagctaacagactcgctagtgataccagaagatgttgagtttttgggacagaagatagaccttgcacccttcaagggtttgctcacctctgtccaagacactgcttcctcggttgcaaagtccatctccagccaacccccgtttaagttttcgatctcaagtagcaaggccgaatcgtggttgctaaccacataccttgatcaagagcttcggatttcgaggggagacaatggcagtgtgtttgtgctcatcaaggaaggcagctcccttttgactccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

300

Amino Acids

32.08

Weight (kDa)

4.65

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	25
AccII	CGCG	2 cut(s)	101, 248
AciI	CCGC	2 cut(s)	99, 191
AclWI	GGATC	2 cut(s)	103, 116
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	26
AfaI	GTAC	1 cut(s)	395
AfiI	CCNNNNNNNGG	5 cut(s)	105, 325, 343, 695, 798
AflIII	ACRYGT	1 cut(s)	246
AgsI	TTSAA	2 cut(s)	500, 694
AjuI	GAANNNNNNNTTGG	2 cut(s)	594, 626
AluBI	AGCT	6 cut(s)	173, 310, 589, 625, 829, 885
AluI	AGCT	6 cut(s)	173, 310, 589, 625, 829, 885
Alw21I	GWGCWC	1 cut(s)	870
Alw26I	GTCTC	2 cut(s)	281, 840
AlwI	GGATC	2 cut(s)	103, 116
Ama87I	CYCGRG	1 cut(s)	291
AoxI	GGCC	5 cut(s)	135, 294, 357, 521, 789
ApeKI	GCWGC	2 cut(s)	170, 882
AspLEI	GCGC	2 cut(s)	28, 278
AspS9I	GGNCC	4 cut(s)	136, 294, 328, 521
AsuC2I	CCSGG	6 cut(s)	74, 106, 140, 292, 293, 520
AsuHPI	GGTGA	3 cut(s)	460, 619, 697
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	328
BamHI	GGATCC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	25
BanII	GRGCYC	1 cut(s)	273
Bbv12I	GWGCWC	1 cut(s)	870
BbvI	GCAGC	2 cut(s)	182, 894
BccI	CCATC	2 cut(s)	98, 752
BceAI	ACGGC	2 cut(s)	142, 164
BclI	TGATCA	1 cut(s)	820
BcnI	CCSGG	6 cut(s)	74, 106, 140, 292, 293, 520
BcoDI	GTCTC	2 cut(s)	281, 840
BfaI	CTAG	1 cut(s)	638
BfoI	RGCGCY	2 cut(s)	29, 279
BglII	AGATCT	1 cut(s)	216
BisI	GCNGC	2 cut(s)	171, 883
BlpI	GCTNAGC	2 cut(s)	204, 272
BlsI	GCNGC	2 cut(s)	172, 884
Bme1390I	CCNGG	6 cut(s)	74, 106, 140, 292, 293, 520
Bme18I	GGWCC	1 cut(s)	328
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	4 cut(s)	136, 294, 328, 521
BmiI	GGNNCC	6 cut(s)	27, 110, 138, 156, 178, 348
BmrFI	CCNGG	6 cut(s)	74, 106, 140, 292, 293, 520
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	2 cut(s)	195, 733
Bpu1102I	GCTNAGC	2 cut(s)	204, 272
BpuEI	CTTGAG	2 cut(s)	575, 763
BpuMI	CCSGG	6 cut(s)	74, 106, 140, 292, 293, 520
BsaHI	GRCGYC	1 cut(s)	26
BsaI	GGTCTC	1 cut(s)	281
BsaJI	CCNNGG	6 cut(s)	138, 147, 180, 291, 354, 729
BsaXI	ACNNNNNCTCC	4 cut(s)	143, 173, 331, 361
Bsc4I	CCNNNNNNNGG	5 cut(s)	105, 325, 343, 695, 798
Bse118I	RCCGGY	1 cut(s)	199
BseDI	CCNNGG	6 cut(s)	138, 147, 180, 291, 354, 729
BseGI	GGATG	1 cut(s)	90
BseLI	CCNNNNNNNGG	5 cut(s)	105, 325, 343, 695, 798
BseMII	CTCAG	2 cut(s)	195, 286
BseRI	GAGGAG	2 cut(s)	167, 227
BseXI	GCAGC	2 cut(s)	182, 894
Bsh1236I	CGCG	2 cut(s)	101, 248
Bsh1285I	CGRYCG	1 cut(s)	354
BshFI	GGCC	5 cut(s)	137, 296, 359, 523, 791
BshNI	GGYRCC	1 cut(s)	25
BsiEI	CGRYCG	1 cut(s)	354
BsiHKAI	GWGCWC	1 cut(s)	870
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	9 cut(s)	74, 106, 140, 162, 200, 209, 292, 344, 519
BslFI	GGGAC	2 cut(s)	271, 681
BslI	CCNNNNNNNGG	5 cut(s)	105, 325, 343, 695, 798
BsmAI	GTCTC	2 cut(s)	281, 840
BsmFI	GGGAC	2 cut(s)	271, 681
BsnI	GGCC	5 cut(s)	137, 296, 359, 523, 791
Bso31I	GGTCTC	1 cut(s)	281
BsoBI	CYCGRG	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	273, 870
Bsp143I	GATC	5 cut(s)	108, 216, 262, 774, 820
Bsp1720I	GCTNAGC	2 cut(s)	204, 272
BspACI	CCGC	2 cut(s)	99, 191
BspANI	GGCC	5 cut(s)	137, 296, 359, 523, 791
BspCNI	CTCAG	2 cut(s)	196, 285
BspFNI	CGCG	2 cut(s)	101, 248
BspLI	GGNNCC	6 cut(s)	27, 110, 138, 156, 178, 348
BspPI	GGATC	2 cut(s)	103, 116
BspT107I	GGYRCC	1 cut(s)	25
BspTNI	GGTCTC	1 cut(s)	281
BsrFI	RCCGGY	1 cut(s)	199
BssAI	RCCGGY	1 cut(s)	199
BssECI	CCNNGG	6 cut(s)	138, 147, 180, 291, 354, 729
BssMI	GATC	5 cut(s)	108, 216, 262, 774, 820
BssNI	GRCGYC	1 cut(s)	26
Bst4CI	ACNGT	1 cut(s)	496
Bst6I	CTCTTC	1 cut(s)	444
BstACI	GRCGYC	1 cut(s)	26
BstC8I	GCNNGC	1 cut(s)	201
BstDEI	CTNAG	3 cut(s)	204, 272, 576
BstDSI	CCRYGG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	90
BstFNI	CGCG	2 cut(s)	101, 248
BstH2I	RGCGCY	2 cut(s)	29, 279
BstHHI	GCGC	2 cut(s)	28, 278
BstKTI	GATC	5 cut(s)	111, 219, 265, 777, 823
BstMAI	GTCTC	2 cut(s)	281, 840
BstMBI	GATC	5 cut(s)	108, 216, 262, 774, 820
BstMCI	CGRYCG	1 cut(s)	354
BstMWI	GCNNNNNNNGC	3 cut(s)	176, 205, 282
BstSCI	CCNGG	6 cut(s)	72, 104, 138, 290, 291, 518
BstUI	CGCG	2 cut(s)	101, 248
BstV1I	GCAGC	2 cut(s)	182, 894
BstX2I	RGATCY	2 cut(s)	108, 216
BstYI	RGATCY	2 cut(s)	108, 216
BsuRI	GGCC	5 cut(s)	137, 296, 359, 523, 791
BtgI	CCRYGG	1 cut(s)	180
BtsCI	GGATG	1 cut(s)	90
BtsI	GCAGTG	2 cut(s)	720, 862
BtsIMutI	CAGTG	2 cut(s)	720, 862
Cac8I	GCNNGC	1 cut(s)	201
CfoI	GCGC	2 cut(s)	28, 278
Cfr10I	RCCGGY	1 cut(s)	199
Cfr13I	GGNCC	4 cut(s)	136, 294, 328, 521
Cfr9I	CCCGGG	1 cut(s)	291
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	1 cut(s)	394
CspCI	CAANNNNNGTGG	2 cut(s)	799, 834
CviQI	GTAC	1 cut(s)	394
DdeI	CTNAG	3 cut(s)	204, 272, 576
DinI	GGCGCC	1 cut(s)	27
DpnI	GATC	5 cut(s)	110, 218, 264, 776, 822
DpnII	GATC	5 cut(s)	108, 216, 262, 774, 820
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	206
Eco147I	AGGCCT	1 cut(s)	359
Eco24I	GRGCYC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	281
Eco47I	GGWCC	1 cut(s)	328
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	1 cut(s)	291
EcoT38I	GRGCYC	1 cut(s)	273
EgeI	GGCGCC	1 cut(s)	27
EheI	GGCGCC	1 cut(s)	27
FaiI	YATR	1 cut(s)	814
FaqI	GGGAC	2 cut(s)	271, 681
FauI	CCCGC	1 cut(s)	106
FbaI	TGATCA	1 cut(s)	820
Fnu4HI	GCNGC	2 cut(s)	171, 883
FokI	GGATG	1 cut(s)	77
FriOI	GRGCYC	1 cut(s)	273
Fsp4HI	GCNGC	2 cut(s)	171, 883
FspBI	CTAG	1 cut(s)	638
GlaI	GCGC	2 cut(s)	27, 277
GluI	GCNGC	2 cut(s)	171, 883
GsuI	CTGGAG	2 cut(s)	195, 733
HaeII	RGCGCY	2 cut(s)	29, 279
HaeIII	GGCC	5 cut(s)	137, 296, 359, 523, 791
HapII	CCGG	9 cut(s)	74, 106, 140, 162, 200, 209, 292, 344, 519
HgaI	GACGC	1 cut(s)	254
HhaI	GCGC	2 cut(s)	28, 278
Hin1I	GRCGYC	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	26, 276
HinP1I	GCGC	2 cut(s)	26, 276
HinfI	GANTC	8 cut(s)	42, 131, 340, 385, 479, 632, 794, 895
HpaII	CCGG	9 cut(s)	74, 106, 140, 162, 200, 209, 292, 344, 519
HphI	GGTGA	3 cut(s)	460, 619, 697
Hpy166II	GTNNAC	2 cut(s)	244, 396
Hpy188I	TCNGA	7 cut(s)	41, 95, 113, 151, 351, 569, 834
Hpy188III	TCNNGA	3 cut(s)	220, 429, 824
Hpy8I	GTNNAC	2 cut(s)	244, 396
Hpy99I	CGWCG	1 cut(s)	41
HpyAV	CCTTC	5 cut(s)	226, 445, 596, 700, 872
HpyCH4III	ACNGT	1 cut(s)	496
HpyCH4V	TGCA	2 cut(s)	686, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	176, 205, 282
HpyF3I	CTNAG	3 cut(s)	204, 272, 576
Hsp92I	GRCGYC	1 cut(s)	26
HspAI	GCGC	2 cut(s)	26, 276
KasI	GGCGCC	1 cut(s)	25
KroI	GCCGGC	1 cut(s)	199
KroNI	GCCGGC	1 cut(s)	201
Ksp22I	TGATCA	1 cut(s)	820
Kzo9I	GATC	5 cut(s)	108, 216, 262, 774, 820
LmnI	GCTCC	4 cut(s)	154, 176, 352, 890
Lsp1109I	GCAGC	2 cut(s)	182, 894
MaeI	CTAG	1 cut(s)	638
MalI	GATC	5 cut(s)	110, 218, 264, 776, 822
MboI	GATC	5 cut(s)	108, 216, 262, 774, 820
MboII	GAAGA	4 cut(s)	241, 431, 662, 685
MfeI	CAATTG	1 cut(s)	320
MflI	RGATCY	2 cut(s)	108, 216
MhlI	GDGCHC	2 cut(s)	273, 870
MluCI	AATT	2 cut(s)	56, 320
MluI	ACGCGT	1 cut(s)	246
Mly113I	GGCGCC	1 cut(s)	26
MlyI	GAGTC	6 cut(s)	36, 140, 334, 473, 626, 889
MmeI	TCCRAC	4 cut(s)	19, 93, 118, 374
MroNI	GCCGGC	1 cut(s)	199
MseI	TTAA	3 cut(s)	14, 372, 765
MspA1I	CMGCKG	1 cut(s)	173
MspI	CCGG	9 cut(s)	74, 106, 140, 162, 200, 209, 292, 344, 519
MspR9I	CCNGG	6 cut(s)	74, 106, 140, 292, 293, 520
MunI	CAATTG	1 cut(s)	320
MvnI	CGCG	2 cut(s)	101, 248
MwoI	GCNNNNNNNGC	3 cut(s)	176, 205, 282
NaeI	GCCGGC	1 cut(s)	201
NarI	GGCGCC	1 cut(s)	26
NciI	CCSGG	6 cut(s)	74, 106, 140, 292, 293, 520
NdeII	GATC	5 cut(s)	108, 216, 262, 774, 820
NgoMIV	GCCGGC	1 cut(s)	199
NlaIV	GGNNCC	6 cut(s)	27, 110, 138, 156, 178, 348
NmeAIII	GCCGAG	1 cut(s)	322
PceI	AGGCCT	1 cut(s)	359
PcsI	WCGNNNNNNNCGW	1 cut(s)	155
PdiI	GCCGGC	1 cut(s)	201
PfeI	GAWTC	2 cut(s)	385, 794
PkrI	GCNGC	2 cut(s)	172, 884
PleI	GAGTC	6 cut(s)	36, 139, 334, 473, 626, 889
PluTI	GGCGCC	1 cut(s)	29
PpsI	GAGTC	6 cut(s)	36, 139, 334, 473, 626, 889
PspN4I	GGNNCC	6 cut(s)	27, 110, 138, 156, 178, 348
PspPI	GGNCC	4 cut(s)	136, 294, 328, 521
PsuI	RGATCY	2 cut(s)	108, 216
PvuII	CAGCTG	1 cut(s)	173
RsaI	GTAC	1 cut(s)	395
RsaNI	GTAC	1 cut(s)	394
SaqAI	TTAA	3 cut(s)	14, 372, 765
SatI	GCNGC	2 cut(s)	171, 883
Sau3AI	GATC	5 cut(s)	108, 216, 262, 774, 820
Sau96I	GGNCC	4 cut(s)	136, 294, 328, 521
SchI	GAGTC	6 cut(s)	36, 140, 334, 473, 626, 889
ScrFI	CCNGG	6 cut(s)	74, 106, 140, 292, 293, 520
SduI	GDGCHC	2 cut(s)	273, 870
SfoI	GGCGCC	1 cut(s)	27
SinI	GGWCC	1 cut(s)	328
SmaI	CCCGGG	1 cut(s)	293
SmlI	CTYRAG	2 cut(s)	590, 778
SmoI	CTYRAG	2 cut(s)	590, 778
Sse9I	AATT	2 cut(s)	56, 320
SseBI	AGGCCT	1 cut(s)	359
SsiI	CCGC	2 cut(s)	99, 191
SspDI	GGCGCC	1 cut(s)	25
SspMI	CTAG	1 cut(s)	638
StuI	AGGCCT	1 cut(s)	359
StyD4I	CCNGG	6 cut(s)	72, 104, 138, 290, 291, 518
TaaI	ACNGT	1 cut(s)	496
TaqI	TCGA	4 cut(s)	221, 477, 773, 839
TaqII	GACCGA	1 cut(s)	368
TasI	AATT	2 cut(s)	56, 320
TfiI	GAWTC	2 cut(s)	385, 794
Tru1I	TTAA	3 cut(s)	14, 372, 765
Tru9I	TTAA	3 cut(s)	14, 372, 765
TscAI	CASTG	2 cut(s)	727, 862
TseI	GCWGC	2 cut(s)	170, 882
TspGWI	ACGGA	2 cut(s)	25, 408
TspMI	CCCGGG	1 cut(s)	291
TspRI	CASTG	2 cut(s)	727, 862
VpaK11BI	GGWCC	1 cut(s)	328
XmaI	CCCGGG	1 cut(s)	291
XspI	CTAG	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.