Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000237.1

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Reverse (-)

18913 .. 20363

Gene Structure 1451 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000237.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

atgtcatctgtccatctaacccatgatttggggactttgagttccattcctgtcctcacaaccacagcacaaaactccaaaccagtcaccaaccctcgggacaacaacgtcttttcaaaaccccagactccgttttgcctaaaccaattcccctgcaagactctcttagtaactccacgtcacccccgcctgacctccaagcctttaactactttggcgccaaactccgtcggactcgccacccccaaattgacactctccaacccggaatacccacaagccatccgacccgcgacccggatccgagccattgacgaggacgagtcggccccggaaacctcggaggagccgtccggcgtggcagctggagccgtggctgtggcggagaagccggctgagccggaggagatctcgaaactgaagaaggttctggtggacgcgttttacgggactgatcttgggctcagcgccaccagcgagacccgggccgagattgtagagcttattacccaattggaggtccaaaacccgactccggctccgaccgaggccttgcctctccttaacgggaaatggattctggcgtacacatcttttgctggtttgtttccgttattgtccagaggaactcttcctttggtgaaggttgatgaggtttcgcagactatcgactcccagaacttcacagttgaaaactctgttcggttttccgggcctttggctacaacttctttcagcaccaatgccacttttgatgtccgaagtcctaagtgtgttcagctcaagtttgaggaaggggtgattggcactccacagctaacagactcgctagtgataccagaagatgttgagtttttgggacagaagatagaccttgcacccttcaagggtttgctcacctctgtccaagacactgcttcctcggttgcaaagtccatctccagccaacccccgtttaagttttcgatctcaagtagcaaggccgaatcgtggttgctaaccacataccttgatcaagagcttcggatttcgaggggagacaatggcagtgtgtttgtgctcatcaaggaaggcagctcccttttgactccttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

364

Amino Acids

39.16

Weight (kDa)

5.12

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	107
AccB1I	GGYRCC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	28
AccII	CGCG	2 cut(s)	293, 440
AciI	CCGC	3 cut(s)	187, 291, 383
AclWI	GGATC	2 cut(s)	295, 308
AcuI	CTGAAG	1 cut(s)	440
AcyI	GRCGYC	1 cut(s)	218
AfaI	GTAC	1 cut(s)	587
AfiI	CCNNNNNNNGG	7 cut(s)	28, 96, 297, 517, 535, 887, 990
AflIII	ACRYGT	1 cut(s)	438
AgsI	TTSAA	3 cut(s)	117, 692, 886
AjiI	CACGTC	1 cut(s)	179
AjuI	GAANNNNNNNTTGG	2 cut(s)	786, 818
AloI	GAACNNNNNNTCC	2 cut(s)	25, 57
AluBI	AGCT	6 cut(s)	365, 502, 781, 817, 1021, 1077
AluI	AGCT	6 cut(s)	365, 502, 781, 817, 1021, 1077
Alw21I	GWGCWC	1 cut(s)	1062
Alw26I	GTCTC	2 cut(s)	473, 1032
AlwI	GGATC	2 cut(s)	295, 308
Ama87I	CYCGRG	2 cut(s)	96, 483
AoxI	GGCC	5 cut(s)	327, 486, 549, 713, 981
ApeKI	GCWGC	2 cut(s)	362, 1074
AspLEI	GCGC	2 cut(s)	220, 470
AspS9I	GGNCC	4 cut(s)	328, 486, 520, 713
AsuC2I	CCSGG	6 cut(s)	266, 298, 332, 484, 485, 712
AsuHPI	GGTGA	5 cut(s)	79, 173, 652, 811, 889
AvaI	CYCGRG	2 cut(s)	96, 483
AvaII	GGWCC	1 cut(s)	520
BamHI	GGATCC	1 cut(s)	300
BanI	GGYRCC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	1062
BbvI	GCAGC	2 cut(s)	374, 1086
BccI	CCATC	3 cut(s)	21, 290, 944
BceAI	ACGGC	2 cut(s)	334, 356
BclI	TGATCA	1 cut(s)	1012
BcnI	CCSGG	6 cut(s)	266, 298, 332, 484, 485, 712
BcoDI	GTCTC	2 cut(s)	473, 1032
BfaI	CTAG	1 cut(s)	830
BfoI	RGCGCY	2 cut(s)	221, 471
BglII	AGATCT	1 cut(s)	408
BisI	GCNGC	2 cut(s)	363, 1075
BlpI	GCTNAGC	2 cut(s)	396, 464
BlsI	GCNGC	2 cut(s)	364, 1076
Bme1390I	CCNGG	6 cut(s)	266, 298, 332, 484, 485, 712
Bme18I	GGWCC	1 cut(s)	520
BmeT110I	CYCGRG	2 cut(s)	96, 483
BmgBI	CACGTC	1 cut(s)	179
BmgT120I	GGNCC	4 cut(s)	328, 486, 520, 713
BmiI	GGNNCC	6 cut(s)	219, 302, 330, 348, 370, 540
BmrFI	CCNGG	6 cut(s)	266, 298, 332, 484, 485, 712
BplI	GAGNNNNNCTC	2 cut(s)	395, 427
BpmI	CTGGAG	2 cut(s)	387, 925
Bpu1102I	GCTNAGC	2 cut(s)	396, 464
BpuEI	CTTGAG	2 cut(s)	767, 955
BpuMI	CCSGG	6 cut(s)	266, 298, 332, 484, 485, 712
BsaHI	GRCGYC	1 cut(s)	218
BsaI	GGTCTC	1 cut(s)	473
BsaJI	CCNNGG	7 cut(s)	95, 330, 339, 372, 483, 546, 921
BsaXI	ACNNNNNCTCC	4 cut(s)	335, 365, 523, 553
Bsc4I	CCNNNNNNNGG	7 cut(s)	28, 96, 297, 517, 535, 887, 990
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	83
BseDI	CCNNGG	7 cut(s)	95, 330, 339, 372, 483, 546, 921
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	7 cut(s)	28, 96, 297, 517, 535, 887, 990
BseMII	CTCAG	2 cut(s)	387, 478
BseNI	ACTGG	1 cut(s)	83
BseRI	GAGGAG	2 cut(s)	359, 419
BseXI	GCAGC	2 cut(s)	374, 1086
Bsh1236I	CGCG	2 cut(s)	293, 440
Bsh1285I	CGRYCG	1 cut(s)	546
BshFI	GGCC	5 cut(s)	329, 488, 551, 715, 983
BshNI	GGYRCC	1 cut(s)	217
BsiEI	CGRYCG	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	1062
BsiHKCI	CYCGRG	2 cut(s)	96, 483
BsiSI	CCGG	9 cut(s)	266, 298, 332, 354, 392, 401, 484, 536, 711
BslFI	GGGAC	4 cut(s)	46, 113, 463, 873
BslI	CCNNNNNNNGG	7 cut(s)	28, 96, 297, 517, 535, 887, 990
BsmAI	GTCTC	2 cut(s)	473, 1032
BsmFI	GGGAC	4 cut(s)	46, 113, 463, 873
BsnI	GGCC	5 cut(s)	329, 488, 551, 715, 983
Bso31I	GGTCTC	1 cut(s)	473
BsoBI	CYCGRG	2 cut(s)	96, 483
Bsp1286I	GDGCHC	2 cut(s)	465, 1062
Bsp143I	GATC	5 cut(s)	300, 408, 454, 966, 1012
Bsp1720I	GCTNAGC	2 cut(s)	396, 464
BspACI	CCGC	3 cut(s)	187, 291, 383
BspANI	GGCC	5 cut(s)	329, 488, 551, 715, 983
BspCNI	CTCAG	2 cut(s)	388, 477
BspFNI	CGCG	2 cut(s)	293, 440
BspLI	GGNNCC	6 cut(s)	219, 302, 330, 348, 370, 540
BspPI	GGATC	2 cut(s)	295, 308
BspT107I	GGYRCC	1 cut(s)	217
BspTNI	GGTCTC	1 cut(s)	473
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	83
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	7 cut(s)	95, 330, 339, 372, 483, 546, 921
BssMI	GATC	5 cut(s)	300, 408, 454, 966, 1012
BssNI	GRCGYC	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	1 cut(s)	636
BstACI	GRCGYC	1 cut(s)	218
BstC8I	GCNNGC	1 cut(s)	393
BstDEI	CTNAG	4 cut(s)	166, 396, 464, 768
BstDSI	CCRYGG	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	282
BstFNI	CGCG	2 cut(s)	293, 440
BstH2I	RGCGCY	2 cut(s)	221, 471
BstHHI	GCGC	2 cut(s)	220, 470
BstKTI	GATC	5 cut(s)	303, 411, 457, 969, 1015
BstMAI	GTCTC	2 cut(s)	473, 1032
BstMBI	GATC	5 cut(s)	300, 408, 454, 966, 1012
BstMCI	CGRYCG	1 cut(s)	546
BstMWI	GCNNNNNNNGC	3 cut(s)	368, 397, 474
BstSCI	CCNGG	6 cut(s)	264, 296, 330, 482, 483, 710
BstUI	CGCG	2 cut(s)	293, 440
BstV1I	GCAGC	2 cut(s)	374, 1086
BstX2I	RGATCY	2 cut(s)	300, 408
BstYI	RGATCY	2 cut(s)	300, 408
BsuRI	GGCC	5 cut(s)	329, 488, 551, 715, 983
BtgI	CCRYGG	1 cut(s)	372
BtrI	CACGTC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	282
BtsI	GCAGTG	2 cut(s)	912, 1054
BtsIMutI	CAGTG	2 cut(s)	912, 1054
Cac8I	GCNNGC	1 cut(s)	393
CfoI	GCGC	2 cut(s)	220, 470
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	4 cut(s)	328, 486, 520, 713
Cfr9I	CCCGGG	1 cut(s)	483
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	586
CspCI	CAANNNNNGTGG	2 cut(s)	991, 1026
CviAII	CATG	1 cut(s)	23
CviQI	GTAC	1 cut(s)	586
DdeI	CTNAG	4 cut(s)	166, 396, 464, 768
DinI	GGCGCC	1 cut(s)	219
DpnI	GATC	5 cut(s)	302, 410, 456, 968, 1014
DpnII	GATC	5 cut(s)	300, 408, 454, 966, 1012
DrdI	GACNNNNNNGTC	1 cut(s)	107
DseDI	GACNNNNNNGTC	1 cut(s)	107
Eam1104I	CTCTTC	1 cut(s)	636
EarI	CTCTTC	1 cut(s)	636
EciI	GGCGGA	1 cut(s)	398
Eco147I	AGGCCT	1 cut(s)	551
Eco24I	GRGCYC	1 cut(s)	465
Eco31I	GGTCTC	1 cut(s)	473
Eco47I	GGWCC	1 cut(s)	520
Eco57I	CTGAAG	1 cut(s)	440
Eco88I	CYCGRG	2 cut(s)	96, 483
EcoT38I	GRGCYC	1 cut(s)	465
EgeI	GGCGCC	1 cut(s)	219
EheI	GGCGCC	1 cut(s)	219
FaeI	CATG	1 cut(s)	26
FaiI	YATR	2 cut(s)	24, 1006
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FaqI	GGGAC	4 cut(s)	46, 113, 463, 873
FatI	CATG	1 cut(s)	22
FauI	CCCGC	2 cut(s)	194, 298
FbaI	TGATCA	1 cut(s)	1012
Fnu4HI	GCNGC	2 cut(s)	363, 1075
FokI	GGATG	1 cut(s)	269
FriOI	GRGCYC	1 cut(s)	465
Fsp4HI	GCNGC	2 cut(s)	363, 1075
FspBI	CTAG	1 cut(s)	830
GlaI	GCGC	2 cut(s)	219, 469
GluI	GCNGC	2 cut(s)	363, 1075
GsuI	CTGGAG	2 cut(s)	387, 925
HaeII	RGCGCY	2 cut(s)	221, 471
HaeIII	GGCC	5 cut(s)	329, 488, 551, 715, 983
HapII	CCGG	9 cut(s)	266, 298, 332, 354, 392, 401, 484, 536, 711
HgaI	GACGC	1 cut(s)	446
HhaI	GCGC	2 cut(s)	220, 470
Hin1I	GRCGYC	1 cut(s)	218
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	2 cut(s)	218, 468
HinP1I	GCGC	2 cut(s)	218, 468
HpaII	CCGG	9 cut(s)	266, 298, 332, 354, 392, 401, 484, 536, 711
HphI	GGTGA	5 cut(s)	79, 173, 652, 811, 889
Hpy166II	GTNNAC	2 cut(s)	436, 588
Hpy188I	TCNGA	7 cut(s)	233, 287, 305, 343, 543, 761, 1026
Hpy188III	TCNNGA	4 cut(s)	98, 412, 621, 1016
Hpy8I	GTNNAC	2 cut(s)	436, 588
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	5 cut(s)	418, 637, 788, 892, 1064
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	2 cut(s)	108, 178
HpyCH4V	TGCA	3 cut(s)	156, 878, 929
HpyF10VI	GCNNNNNNNGC	3 cut(s)	368, 397, 474
HpyF3I	CTNAG	4 cut(s)	166, 396, 464, 768
HpySE526I	ACGT	2 cut(s)	108, 178
Hsp92I	GRCGYC	1 cut(s)	218
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	2 cut(s)	218, 468
KasI	GGCGCC	1 cut(s)	217
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Ksp22I	TGATCA	1 cut(s)	1012
Kzo9I	GATC	5 cut(s)	300, 408, 454, 966, 1012
LmnI	GCTCC	4 cut(s)	346, 368, 544, 1082
Lsp1109I	GCAGC	2 cut(s)	374, 1086
MaeI	CTAG	1 cut(s)	830
MaeII	ACGT	2 cut(s)	108, 178
MaeIII	GTNAC	3 cut(s)	85, 169, 179
MalI	GATC	5 cut(s)	302, 410, 456, 968, 1014
MboI	GATC	5 cut(s)	300, 408, 454, 966, 1012
MboII	GAAGA	4 cut(s)	433, 623, 854, 877
MfeI	CAATTG	1 cut(s)	512
MflI	RGATCY	2 cut(s)	300, 408
MhlI	GDGCHC	2 cut(s)	465, 1062
MluCI	AATT	3 cut(s)	146, 248, 512
MluI	ACGCGT	1 cut(s)	438
Mly113I	GGCGCC	1 cut(s)	218
MlyI	GAGTC	8 cut(s)	121, 154, 228, 332, 526, 665, 818, 1081
MmeI	TCCRAC	4 cut(s)	211, 285, 310, 566
MroNI	GCCGGC	1 cut(s)	391
MseI	TTAA	3 cut(s)	206, 564, 957
MspA1I	CMGCKG	1 cut(s)	365
MspI	CCGG	9 cut(s)	266, 298, 332, 354, 392, 401, 484, 536, 711
MspR9I	CCNGG	6 cut(s)	266, 298, 332, 484, 485, 712
MunI	CAATTG	1 cut(s)	512
MvnI	CGCG	2 cut(s)	293, 440
MwoI	GCNNNNNNNGC	3 cut(s)	368, 397, 474
NaeI	GCCGGC	1 cut(s)	393
NarI	GGCGCC	1 cut(s)	218
NciI	CCSGG	6 cut(s)	266, 298, 332, 484, 485, 712
NdeII	GATC	5 cut(s)	300, 408, 454, 966, 1012
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	6 cut(s)	219, 302, 330, 348, 370, 540
NmeAIII	GCCGAG	1 cut(s)	514
NmuCI	GTSAC	2 cut(s)	85, 179
PceI	AGGCCT	1 cut(s)	551
PcsI	WCGNNNNNNNCGW	1 cut(s)	347
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	2 cut(s)	577, 986
PflMI	CCANNNNNTGG	1 cut(s)	28
PkrI	GCNGC	2 cut(s)	364, 1076
PleI	GAGTC	8 cut(s)	121, 154, 228, 331, 526, 665, 818, 1081
PluTI	GGCGCC	1 cut(s)	221
PpsI	GAGTC	8 cut(s)	121, 154, 228, 331, 526, 665, 818, 1081
PspN4I	GGNNCC	6 cut(s)	219, 302, 330, 348, 370, 540
PspPI	GGNCC	4 cut(s)	328, 486, 520, 713
PsuI	RGATCY	2 cut(s)	300, 408
PvuII	CAGCTG	1 cut(s)	365
RsaI	GTAC	1 cut(s)	587
RsaNI	GTAC	1 cut(s)	586
SaqAI	TTAA	3 cut(s)	206, 564, 957
SatI	GCNGC	2 cut(s)	363, 1075
Sau3AI	GATC	5 cut(s)	300, 408, 454, 966, 1012
Sau96I	GGNCC	4 cut(s)	328, 486, 520, 713
SchI	GAGTC	8 cut(s)	121, 154, 228, 332, 526, 665, 818, 1081
ScrFI	CCNGG	6 cut(s)	266, 298, 332, 484, 485, 712
SduI	GDGCHC	2 cut(s)	465, 1062
SfoI	GGCGCC	1 cut(s)	219
SinI	GGWCC	1 cut(s)	520
SmaI	CCCGGG	1 cut(s)	485
SmlI	CTYRAG	2 cut(s)	782, 970
SmoI	CTYRAG	2 cut(s)	782, 970
Sse9I	AATT	3 cut(s)	146, 248, 512
SseBI	AGGCCT	1 cut(s)	551
SsiI	CCGC	3 cut(s)	187, 291, 383
SspDI	GGCGCC	1 cut(s)	217
SspMI	CTAG	1 cut(s)	830
StuI	AGGCCT	1 cut(s)	551
StyD4I	CCNGG	6 cut(s)	264, 296, 330, 482, 483, 710
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	2 cut(s)	111, 181
TaqI	TCGA	4 cut(s)	413, 669, 965, 1031
TaqII	GACCGA	1 cut(s)	560
TasI	AATT	3 cut(s)	146, 248, 512
TfiI	GAWTC	2 cut(s)	577, 986
Tru1I	TTAA	3 cut(s)	206, 564, 957
Tru9I	TTAA	3 cut(s)	206, 564, 957
TscAI	CASTG	2 cut(s)	919, 1054
TseFI	GTSAC	2 cut(s)	85, 179
TseI	GCWGC	2 cut(s)	362, 1074
Tsp45I	GTSAC	2 cut(s)	85, 179
TspGWI	ACGGA	3 cut(s)	120, 217, 600
TspMI	CCCGGG	1 cut(s)	483
TspRI	CASTG	2 cut(s)	919, 1054
Van91I	CCANNNNNTGG	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	520
XmaI	CCCGGG	1 cut(s)	483
XspI	CTAG	1 cut(s)	830

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.