Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Forward (+)

667865 .. 669760

Gene Structure 1896 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g01310.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTTTTGTCTCTCAGCTAAACCACTTCCCATGCAAGACTCTCTCACTAACTCCGCCCCAACCCCGCCTCACCTCCAAGCCTTCCATTTTGGCGCCAAACTCCATCTCCCTCGCCACCCACAAATTGAAACTCTCCAACCCGGAATCCCCACCGGCCGCCCGACCCGCCACCCGTGTCCGCGCCCTGGATGACGACTCGGCCCCGGAGAACTCGGAGGAGTCGTCCGACGTGGCAGCTGGAGCTGTGGCTGTGGCAGAGAAGCCGGATGAGCCGGAGGAGATCTCGAAACTAAAGAAGGCTTTGGTGGACTCGTTCTACGGGACTGATCGTGGGCTCAGCGCCACCAGCGAGACCCGGGCCGAGATTGTCGAGCTTATTACCCAATTAGAGGCCCAAAACCCGACTCCGGCTCCGACCGACGCGTTGCCTCTACTCAACGGGAAATGGATTCTGGCGTACACATCTTTTGCTGGTTTGTTTCCAATATTGTCCAGAGGAACTCTTCCTTTGGTGAAGGTTGCTGAGATTTCGCAGACTATAGACTCTGATAATTTCACAGTTGAAAACTCTGTTCGGTTTTCCGGGCCTTTGGCTACAACTTCTTTCAGCACCAATGCCACATTTGATGTCCGAAGTCCCAAGCGTGTTCAGCTCAAATTTGAGGAAGGGGTGATTGGGACTCCCCAGCTAACAGACTCGCTAGTGATACCGGAAGATGTTGAGTTTTTGGGACAGAAGATAGACCTTGCACCCTTCAAAGGTTTGCTCACTTCTGTCCAAGACACTGCTTCATCAGTTGCAAAGTCCATCTCTAGCCAACCCCCAATTAAGTTCTCGATTTCAAGCAGCAATGCCGAATCGTGGTTGCTAACCACATACCTTGATCAAGAGCTTCGGATTTCGAGGGGAGACAATGGCAGTGTGTTTGTGCTCATCAAGGAAGGCAGCTCCCTTTTGACTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

323

Amino Acids

34.54

Weight (kDa)

4.94

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	97 - 312	1.3e-79	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	94
AccII	CGCG	2 cut(s)	183, 425
AciI	CCGC	5 cut(s)	56, 67, 159, 168, 181
AcoI	YGGCCR	1 cut(s)	156
AcsI	RAATTY	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	95
AfaI	GTAC	1 cut(s)	461
AfiI	CCNNNNNNNGG	5 cut(s)	187, 391, 409, 761, 864
AflIII	ACRYGT	1 cut(s)	423
AgsI	TTSAA	4 cut(s)	130, 566, 760, 846
AjiI	CACGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	186
AjuI	GAANNNNNNNTTGG	2 cut(s)	660, 692
AluBI	AGCT	8 cut(s)	19, 239, 245, 376, 655, 691, 895, 951
AluI	AGCT	8 cut(s)	19, 239, 245, 376, 655, 691, 895, 951
Alw21I	GWGCWC	1 cut(s)	936
Alw26I	GTCTC	3 cut(s)	16, 347, 906
Ama87I	CYCGRG	1 cut(s)	357
AoxI	GGCC	5 cut(s)	156, 201, 360, 393, 587
ApeKI	GCWGC	3 cut(s)	236, 849, 948
ApoI	RAATTY	1 cut(s)	659
AspLEI	GCGC	3 cut(s)	97, 185, 344
AspS9I	GGNCC	4 cut(s)	202, 360, 394, 587
AsuC2I	CCSGG	5 cut(s)	143, 206, 358, 359, 586
AsuHPI	GGTGA	3 cut(s)	64, 526, 685
AvaI	CYCGRG	1 cut(s)	357
BanI	GGYRCC	1 cut(s)	94
BanII	GRGCYC	1 cut(s)	339
Bbv12I	GWGCWC	1 cut(s)	936
BbvI	GCAGC	3 cut(s)	248, 861, 960
BccI	CCATC	2 cut(s)	113, 818
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	1 cut(s)	886
BcnI	CCSGG	5 cut(s)	143, 206, 358, 359, 586
BcoDI	GTCTC	3 cut(s)	16, 347, 906
BfaI	CTAG	2 cut(s)	704, 816
BfmI	CTRYAG	1 cut(s)	540
BfoI	RGCGCY	2 cut(s)	98, 345
BglII	AGATCT	1 cut(s)	282
BisI	GCNGC	4 cut(s)	159, 237, 850, 949
BlpI	GCTNAGC	1 cut(s)	338
BlsI	GCNGC	4 cut(s)	160, 238, 851, 950
Bme1390I	CCNGG	6 cut(s)	143, 188, 206, 358, 359, 586
BmeT110I	CYCGRG	1 cut(s)	357
BmgBI	CACGTC	1 cut(s)	232
BmgT120I	GGNCC	4 cut(s)	202, 360, 394, 587
BmiI	GGNNCC	3 cut(s)	96, 204, 414
BmrFI	CCNGG	6 cut(s)	143, 188, 206, 358, 359, 586
BplI	GAGNNNNNCTC	2 cut(s)	269, 301
BpmI	CTGGAG	1 cut(s)	261
Bpu1102I	GCTNAGC	1 cut(s)	338
BpuMI	CCSGG	5 cut(s)	143, 206, 358, 359, 586
BsaHI	GRCGYC	1 cut(s)	95
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	186, 204, 357
BsaWI	WCCGGW	1 cut(s)	712
BsaXI	ACNNNNNCTCC	6 cut(s)	92, 122, 209, 239, 397, 427
Bsc4I	CCNNNNNNNGG	5 cut(s)	187, 391, 409, 761, 864
Bse118I	RCCGGY	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	859
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	186, 204, 357
BseGI	GGATG	2 cut(s)	196, 274
BseLI	CCNNNNNNNGG	5 cut(s)	187, 391, 409, 761, 864
BseMI	GCAATG	1 cut(s)	859
BseMII	CTCAG	3 cut(s)	29, 352, 516
BseRI	GAGGAG	2 cut(s)	233, 293
BseX3I	CGGCCG	1 cut(s)	156
BseXI	GCAGC	3 cut(s)	248, 861, 960
BseYI	CCCAGC	1 cut(s)	687
Bsh1236I	CGCG	2 cut(s)	183, 425
Bsh1285I	CGRYCG	2 cut(s)	159, 420
BshFI	GGCC	5 cut(s)	158, 203, 362, 395, 589
BshNI	GGYRCC	1 cut(s)	94
BsiEI	CGRYCG	2 cut(s)	159, 420
BsiHKAI	GWGCWC	1 cut(s)	936
BsiHKCI	CYCGRG	1 cut(s)	357
BsiSI	CCGG	9 cut(s)	143, 155, 206, 266, 275, 358, 410, 585, 713
BslFI	GGGAC	4 cut(s)	337, 624, 694, 747
BslI	CCNNNNNNNGG	5 cut(s)	187, 391, 409, 761, 864
BsmAI	GTCTC	3 cut(s)	16, 347, 906
BsmFI	GGGAC	4 cut(s)	337, 624, 694, 747
BsnI	GGCC	5 cut(s)	158, 203, 362, 395, 589
Bso31I	GGTCTC	1 cut(s)	347
BsoBI	CYCGRG	1 cut(s)	357
Bsp1286I	GDGCHC	2 cut(s)	339, 936
Bsp143I	GATC	3 cut(s)	282, 328, 886
Bsp1720I	GCTNAGC	1 cut(s)	338
BspACI	CCGC	5 cut(s)	56, 67, 159, 168, 181
BspANI	GGCC	5 cut(s)	158, 203, 362, 395, 589
BspCNI	CTCAG	3 cut(s)	28, 351, 517
BspFNI	CGCG	2 cut(s)	183, 425
BspLI	GGNNCC	3 cut(s)	96, 204, 414
BspT107I	GGYRCC	1 cut(s)	94
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	859
BsrFI	RCCGGY	1 cut(s)	154
BssAI	RCCGGY	1 cut(s)	154
BssECI	CCNNGG	3 cut(s)	186, 204, 357
BssMI	GATC	3 cut(s)	282, 328, 886
BssNI	GRCGYC	1 cut(s)	95
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	1 cut(s)	562
Bst6I	CTCTTC	1 cut(s)	510
BstACI	GRCGYC	1 cut(s)	95
BstDEI	CTNAG	3 cut(s)	15, 338, 525
BstF5I	GGATG	2 cut(s)	196, 274
BstFNI	CGCG	2 cut(s)	183, 425
BstH2I	RGCGCY	2 cut(s)	98, 345
BstHHI	GCGC	3 cut(s)	97, 185, 344
BstKTI	GATC	3 cut(s)	285, 331, 889
BstMAI	GTCTC	3 cut(s)	16, 347, 906
BstMBI	GATC	3 cut(s)	282, 328, 886
BstMCI	CGRYCG	2 cut(s)	159, 420
BstMWI	GCNNNNNNNGC	5 cut(s)	167, 242, 271, 348, 652
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	6 cut(s)	141, 186, 204, 356, 357, 584
BstSFI	CTRYAG	1 cut(s)	540
BstUI	CGCG	2 cut(s)	183, 425
BstV1I	GCAGC	3 cut(s)	248, 861, 960
BstX2I	RGATCY	1 cut(s)	282
BstYI	RGATCY	1 cut(s)	282
BstZI	CGGCCG	1 cut(s)	156
BsuRI	GGCC	5 cut(s)	158, 203, 362, 395, 589
BtrI	CACGTC	1 cut(s)	232
BtsCI	GGATG	2 cut(s)	196, 274
BtsI	GCAGTG	2 cut(s)	786, 928
BtsIMutI	CAGTG	2 cut(s)	786, 928
CfoI	GCGC	3 cut(s)	97, 185, 344
Cfr10I	RCCGGY	1 cut(s)	154
Cfr13I	GGNCC	4 cut(s)	202, 360, 394, 587
Cfr9I	CCCGGG	1 cut(s)	357
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	1 cut(s)	460
CspCI	CAANNNNNGTGG	2 cut(s)	865, 900
CviAII	CATG	1 cut(s)	33
CviQI	GTAC	1 cut(s)	460
DdeI	CTNAG	3 cut(s)	15, 338, 525
DinI	GGCGCC	1 cut(s)	96
DpnI	GATC	3 cut(s)	284, 330, 888
DpnII	GATC	3 cut(s)	282, 328, 886
EaeI	YGGCCR	1 cut(s)	156
EagI	CGGCCG	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	510
EarI	CTCTTC	1 cut(s)	510
EciI	GGCGGA	1 cut(s)	45
EclXI	CGGCCG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	339
Eco31I	GGTCTC	1 cut(s)	347
Eco52I	CGGCCG	1 cut(s)	156
Eco88I	CYCGRG	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	186
EcoT38I	GRGCYC	1 cut(s)	339
EgeI	GGCGCC	1 cut(s)	96
EheI	GGCGCC	1 cut(s)	96
FaeI	CATG	1 cut(s)	36
FaiI	YATR	3 cut(s)	34, 542, 880
FaqI	GGGAC	4 cut(s)	337, 624, 694, 747
FatI	CATG	1 cut(s)	32
FauI	CCCGC	2 cut(s)	74, 175
FbaI	TGATCA	1 cut(s)	886
Fnu4HI	GCNGC	4 cut(s)	159, 237, 850, 949
FokI	GGATG	2 cut(s)	203, 281
FriOI	GRGCYC	1 cut(s)	339
Fsp4HI	GCNGC	4 cut(s)	159, 237, 850, 949
FspBI	CTAG	2 cut(s)	704, 816
GlaI	GCGC	3 cut(s)	96, 184, 343
GluI	GCNGC	4 cut(s)	159, 237, 850, 949
GsaI	CCCAGC	1 cut(s)	691
GsuI	CTGGAG	1 cut(s)	261
HaeII	RGCGCY	2 cut(s)	98, 345
HaeIII	GGCC	5 cut(s)	158, 203, 362, 395, 589
HapII	CCGG	9 cut(s)	143, 155, 206, 266, 275, 358, 410, 585, 713
HgaI	GACGC	1 cut(s)	431
HhaI	GCGC	3 cut(s)	97, 185, 344
Hin1I	GRCGYC	1 cut(s)	95
Hin1II	CATG	1 cut(s)	36
Hin6I	GCGC	3 cut(s)	95, 183, 342
HinP1I	GCGC	3 cut(s)	95, 183, 342
HpaII	CCGG	9 cut(s)	143, 155, 206, 266, 275, 358, 410, 585, 713
HphI	GGTGA	3 cut(s)	64, 526, 685
Hpy166II	GTNNAC	2 cut(s)	310, 462
Hpy188I	TCNGA	6 cut(s)	217, 229, 417, 550, 635, 900
Hpy188III	TCNNGA	4 cut(s)	286, 495, 838, 890
Hpy8I	GTNNAC	2 cut(s)	310, 462
Hpy99I	CGWCG	2 cut(s)	233, 425
HpyAV	CCTTC	6 cut(s)	93, 292, 511, 662, 766, 938
HpyCH4III	ACNGT	1 cut(s)	562
HpyCH4IV	ACGT	1 cut(s)	231
HpyCH4V	TGCA	3 cut(s)	36, 752, 803
HpyF10VI	GCNNNNNNNGC	5 cut(s)	167, 242, 271, 348, 652
HpyF3I	CTNAG	3 cut(s)	15, 338, 525
HpySE526I	ACGT	1 cut(s)	231
Hsp92I	GRCGYC	1 cut(s)	95
Hsp92II	CATG	1 cut(s)	36
HspAI	GCGC	3 cut(s)	95, 183, 342
KasI	GGCGCC	1 cut(s)	94
Ksp22I	TGATCA	1 cut(s)	886
Kzo9I	GATC	3 cut(s)	282, 328, 886
LmnI	GCTCC	3 cut(s)	242, 418, 956
Lsp1109I	GCAGC	3 cut(s)	248, 861, 960
MaeI	CTAG	2 cut(s)	704, 816
MaeII	ACGT	1 cut(s)	231
MalI	GATC	3 cut(s)	284, 330, 888
MboI	GATC	3 cut(s)	282, 328, 886
MboII	GAAGA	3 cut(s)	497, 728, 751
MflI	RGATCY	1 cut(s)	282
MhlI	GDGCHC	2 cut(s)	339, 936
MluCI	AATT	5 cut(s)	125, 386, 553, 659, 828
MluI	ACGCGT	1 cut(s)	423
Mly113I	GGCGCC	1 cut(s)	95
MlyI	GAGTC	9 cut(s)	34, 191, 230, 305, 400, 539, 676, 692, 955
MmeI	TCCRAC	3 cut(s)	162, 252, 440
MseI	TTAA	1 cut(s)	831
MspA1I	CMGCKG	1 cut(s)	239
MspI	CCGG	9 cut(s)	143, 155, 206, 266, 275, 358, 410, 585, 713
MspR9I	CCNGG	6 cut(s)	143, 188, 206, 358, 359, 586
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	2 cut(s)	183, 425
MwoI	GCNNNNNNNGC	5 cut(s)	167, 242, 271, 348, 652
NarI	GGCGCC	1 cut(s)	95
NciI	CCSGG	5 cut(s)	143, 206, 358, 359, 586
NdeII	GATC	3 cut(s)	282, 328, 886
NlaIII	CATG	1 cut(s)	36
NlaIV	GGNNCC	3 cut(s)	96, 204, 414
NmeAIII	GCCGAG	2 cut(s)	179, 388
PcsI	WCGNNNNNNNCGW	1 cut(s)	221
PfeI	GAWTC	3 cut(s)	146, 451, 860
PkrI	GCNGC	4 cut(s)	160, 238, 851, 950
PleI	GAGTC	9 cut(s)	34, 191, 229, 305, 400, 539, 676, 692, 955
PluTI	GGCGCC	1 cut(s)	98
PpsI	GAGTC	9 cut(s)	34, 191, 229, 305, 400, 539, 676, 692, 955
Psp6I	CCWGG	1 cut(s)	186
PspFI	CCCAGC	1 cut(s)	687
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	3 cut(s)	96, 204, 414
PspPI	GGNCC	4 cut(s)	202, 360, 394, 587
PsuI	RGATCY	1 cut(s)	282
PvuII	CAGCTG	1 cut(s)	239
RsaI	GTAC	1 cut(s)	461
RsaNI	GTAC	1 cut(s)	460
SaqAI	TTAA	1 cut(s)	831
SatI	GCNGC	4 cut(s)	159, 237, 850, 949
Sau3AI	GATC	3 cut(s)	282, 328, 886
Sau96I	GGNCC	4 cut(s)	202, 360, 394, 587
SchI	GAGTC	9 cut(s)	34, 191, 230, 305, 400, 539, 676, 692, 955
ScrFI	CCNGG	6 cut(s)	143, 188, 206, 358, 359, 586
SduI	GDGCHC	2 cut(s)	339, 936
SfcI	CTRYAG	1 cut(s)	540
SfoI	GGCGCC	1 cut(s)	96
SmaI	CCCGGG	1 cut(s)	359
Sse9I	AATT	5 cut(s)	125, 386, 553, 659, 828
SsiI	CCGC	5 cut(s)	56, 67, 159, 168, 181
SspDI	GGCGCC	1 cut(s)	94
SspI	AATATT	1 cut(s)	489
SspMI	CTAG	2 cut(s)	704, 816
StyD4I	CCNGG	6 cut(s)	141, 186, 204, 356, 357, 584
TaaI	ACNGT	1 cut(s)	562
TaiI	ACGT	1 cut(s)	234
TaqI	TCGA	4 cut(s)	287, 372, 839, 905
TaqII	GACCGA	1 cut(s)	434
TasI	AATT	5 cut(s)	125, 386, 553, 659, 828
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	3 cut(s)	146, 451, 860
Tru1I	TTAA	1 cut(s)	831
Tru9I	TTAA	1 cut(s)	831
TscAI	CASTG	2 cut(s)	793, 928
TseI	GCWGC	3 cut(s)	236, 849, 948
TspDTI	ATGAA	1 cut(s)	783
TspMI	CCCGGG	1 cut(s)	357
TspRI	CASTG	2 cut(s)	793, 928
XapI	RAATTY	1 cut(s)	659
XmaI	CCCGGG	1 cut(s)	357
XspI	CTAG	2 cut(s)	704, 816

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.