Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Forward (+)

1242077 .. 1243658

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG016300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCCTTCGTCTCTCAGCTAAACCAATTCCCCTGCAAGACTCTCTCACCAACTCCACGTCACCCCCGCCTCACCTCCAAGCCTTCAACTTTCGCGCCAAACTCCATCGGACTCGCCACCCCCAAACTGAAACTCTCCAACCCGGAATACCCACAAGCCATCCGACCCGCGACCCGGATCCGAGCCGTTGACGAGGACGAGTCGGCCCCGGAAACCTCGGAGGAGCCGTCCGACGTGGCAGCTGGAGCCGTGGCTGTGGCGGAGAAGCCGGCTGAGCCGGAGGAGATCTCGAAACTGAAGAAGGCTCTGGTGGACGCGTTTTACGGGACTGATCGTGGGCTCAGCGCCACCAGCGAGACCCGGGCCGAGATTGTCGAGCTTATTACCCAATTGGAGGCCCAAAACCCGACTCCGGCTCCGACCGAGGCCTTGCCTCTCCTAAACGGGAAATGGATTCTGGCGTACACATCTTTTGCCGGTTTGTTTCCGTTATTGTCCAGAGGAACTCTTCCTTTGGTGAAGGTTGATGAGGTTTCGCAGACTATCGACTCCCAGAACTTCACAGTTGAAAACTCTGTTCGGTTTTCTGGGCCTTTGGCTACAACTTCTTTCAGCACCAATGCCACATTTGATGTCCGAAGTCCTAAGCGTGTTCAGCTCAAGTTTGAGGAAGGGGTGATTGGCACTCCACAGCTAACAGACTCGCTAGTGATACCAGAAGATGTTGAGTTTTTGGGACAGAAGATAGACCTTGCACCCTTCAAGGGTTTGCTCACCTCTGTCCAAGACACTGCTTCCTCGGTTGCAAAGTCCATCTCCAGCCAACCCCCGTTTAAGTTTTCGATCTCAAGTAGCAAGGCTGAATCATGGTTGCTAACCACATACCTTGATCAAGAGCTTCGGATTTCGAGGGGAGACAATGGCAGTGTGTTTGTGCTCATCAAGGAAGGCAGCTCCCTTTTGACTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

323

Amino Acids

34.87

Weight (kDa)

5.05

Isoelectric Point (pI)

40.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	98 - 313	1.1e-79	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	95, 170, 317
AciI	CCGC	3 cut(s)	67, 168, 260
AclWI	GGATC	2 cut(s)	172, 185
AcuI	CTGAAG	1 cut(s)	317
AfaI	GTAC	1 cut(s)	464
AfiI	CCNNNNNNNGG	4 cut(s)	174, 394, 412, 764
AflIII	ACRYGT	1 cut(s)	315
AgsI	TTSAA	3 cut(s)	87, 569, 763
AjiI	CACGTC	2 cut(s)	59, 235
AjuI	GAANNNNNNNTTGG	2 cut(s)	663, 695
AluBI	AGCT	7 cut(s)	19, 242, 379, 658, 694, 898, 954
AluI	AGCT	7 cut(s)	19, 242, 379, 658, 694, 898, 954
Alw21I	GWGCWC	1 cut(s)	939
Alw26I	GTCTC	3 cut(s)	16, 350, 909
AlwI	GGATC	2 cut(s)	172, 185
Ama87I	CYCGRG	1 cut(s)	360
AoxI	GGCC	6 cut(s)	3, 204, 363, 396, 426, 590
ApeKI	GCWGC	2 cut(s)	239, 951
AspLEI	GCGC	2 cut(s)	97, 347
AspS9I	GGNCC	4 cut(s)	205, 363, 397, 590
AsuC2I	CCSGG	5 cut(s)	143, 175, 209, 361, 362
AsuHPI	GGTGA	6 cut(s)	39, 53, 64, 529, 688, 766
AvaI	CYCGRG	1 cut(s)	360
BamHI	GGATCC	1 cut(s)	177
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	939
BbvI	GCAGC	2 cut(s)	251, 963
BccI	CCATC	3 cut(s)	113, 167, 821
BceAI	ACGGC	3 cut(s)	170, 211, 233
BclI	TGATCA	1 cut(s)	889
BcnI	CCSGG	5 cut(s)	143, 175, 209, 361, 362
BcoDI	GTCTC	3 cut(s)	16, 350, 909
BfaI	CTAG	1 cut(s)	707
BfoI	RGCGCY	1 cut(s)	348
BglII	AGATCT	1 cut(s)	285
BisI	GCNGC	2 cut(s)	240, 952
BlpI	GCTNAGC	2 cut(s)	273, 341
BlsI	GCNGC	2 cut(s)	241, 953
Bme1390I	CCNGG	5 cut(s)	143, 175, 209, 361, 362
BmeT110I	CYCGRG	1 cut(s)	360
BmgBI	CACGTC	2 cut(s)	59, 235
BmgT120I	GGNCC	4 cut(s)	205, 363, 397, 590
BmiI	GGNNCC	5 cut(s)	179, 207, 225, 247, 417
BmrFI	CCNGG	5 cut(s)	143, 175, 209, 361, 362
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	2 cut(s)	264, 802
Bpu10I	CCTNAGC	1 cut(s)	645
Bpu1102I	GCTNAGC	2 cut(s)	273, 341
BpuEI	CTTGAG	2 cut(s)	644, 832
BpuMI	CCSGG	5 cut(s)	143, 175, 209, 361, 362
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	6 cut(s)	207, 216, 249, 360, 423, 798
BsaXI	ACNNNNNCTCC	4 cut(s)	212, 242, 400, 430
Bsc4I	CCNNNNNNNGG	4 cut(s)	174, 394, 412, 764
Bse118I	RCCGGY	2 cut(s)	268, 476
BseDI	CCNNGG	6 cut(s)	207, 216, 249, 360, 423, 798
BseGI	GGATG	1 cut(s)	159
BseLI	CCNNNNNNNGG	4 cut(s)	174, 394, 412, 764
BseMII	CTCAG	3 cut(s)	29, 264, 355
BseRI	GAGGAG	2 cut(s)	236, 296
BseXI	GCAGC	2 cut(s)	251, 963
Bsh1236I	CGCG	3 cut(s)	95, 170, 317
Bsh1285I	CGRYCG	1 cut(s)	423
BshFI	GGCC	6 cut(s)	5, 206, 365, 398, 428, 592
BsiEI	CGRYCG	1 cut(s)	423
BsiHKAI	GWGCWC	1 cut(s)	939
BsiHKCI	CYCGRG	1 cut(s)	360
BsiSI	CCGG	8 cut(s)	143, 175, 209, 269, 278, 361, 413, 477
BslFI	GGGAC	2 cut(s)	340, 750
BslI	CCNNNNNNNGG	4 cut(s)	174, 394, 412, 764
BsmAI	GTCTC	3 cut(s)	16, 350, 909
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	340, 750
BsnI	GGCC	6 cut(s)	5, 206, 365, 398, 428, 592
Bso31I	GGTCTC	1 cut(s)	350
BsoBI	CYCGRG	1 cut(s)	360
Bsp1286I	GDGCHC	2 cut(s)	342, 939
Bsp143I	GATC	5 cut(s)	177, 285, 331, 843, 889
Bsp1720I	GCTNAGC	2 cut(s)	273, 341
BspACI	CCGC	3 cut(s)	67, 168, 260
BspANI	GGCC	6 cut(s)	5, 206, 365, 398, 428, 592
BspCNI	CTCAG	3 cut(s)	28, 265, 354
BspFNI	CGCG	3 cut(s)	95, 170, 317
BspLI	GGNNCC	5 cut(s)	179, 207, 225, 247, 417
BspPI	GGATC	2 cut(s)	172, 185
BspTNI	GGTCTC	1 cut(s)	350
BsrFI	RCCGGY	2 cut(s)	268, 476
BssAI	RCCGGY	2 cut(s)	268, 476
BssECI	CCNNGG	6 cut(s)	207, 216, 249, 360, 423, 798
BssMI	GATC	5 cut(s)	177, 285, 331, 843, 889
Bst4CI	ACNGT	1 cut(s)	565
Bst6I	CTCTTC	1 cut(s)	513
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	4 cut(s)	15, 273, 341, 645
BstDSI	CCRYGG	1 cut(s)	249
BstF5I	GGATG	1 cut(s)	159
BstFNI	CGCG	3 cut(s)	95, 170, 317
BstH2I	RGCGCY	1 cut(s)	348
BstHHI	GCGC	2 cut(s)	97, 347
BstKTI	GATC	5 cut(s)	180, 288, 334, 846, 892
BstMAI	GTCTC	3 cut(s)	16, 350, 909
BstMBI	GATC	5 cut(s)	177, 285, 331, 843, 889
BstMCI	CGRYCG	1 cut(s)	423
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 274, 351, 655
BstSCI	CCNGG	5 cut(s)	141, 173, 207, 359, 360
BstUI	CGCG	3 cut(s)	95, 170, 317
BstV1I	GCAGC	2 cut(s)	251, 963
BstX2I	RGATCY	2 cut(s)	177, 285
BstYI	RGATCY	2 cut(s)	177, 285
BsuRI	GGCC	6 cut(s)	5, 206, 365, 398, 428, 592
BtgI	CCRYGG	1 cut(s)	249
BtrI	CACGTC	2 cut(s)	59, 235
BtsCI	GGATG	1 cut(s)	159
BtsI	GCAGTG	2 cut(s)	789, 931
BtsIMutI	CAGTG	2 cut(s)	789, 931
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	2 cut(s)	97, 347
Cfr10I	RCCGGY	2 cut(s)	268, 476
Cfr13I	GGNCC	4 cut(s)	205, 363, 397, 590
Cfr9I	CCCGGG	1 cut(s)	360
CseI	GACGC	1 cut(s)	323
Csp6I	GTAC	1 cut(s)	463
CspCI	CAANNNNNGTGG	2 cut(s)	868, 903
CviAII	CATG	1 cut(s)	867
CviQI	GTAC	1 cut(s)	463
DdeI	CTNAG	4 cut(s)	15, 273, 341, 645
DpnI	GATC	5 cut(s)	179, 287, 333, 845, 891
DpnII	GATC	5 cut(s)	177, 285, 331, 843, 889
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
EciI	GGCGGA	1 cut(s)	275
Eco147I	AGGCCT	1 cut(s)	428
Eco24I	GRGCYC	1 cut(s)	342
Eco31I	GGTCTC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	317
Eco88I	CYCGRG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	342
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	870
FaiI	YATR	2 cut(s)	868, 883
FaqI	GGGAC	2 cut(s)	340, 750
FatI	CATG	1 cut(s)	866
FauI	CCCGC	2 cut(s)	74, 175
FbaI	TGATCA	1 cut(s)	889
Fnu4HI	GCNGC	2 cut(s)	240, 952
FokI	GGATG	1 cut(s)	146
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	2 cut(s)	240, 952
FspBI	CTAG	1 cut(s)	707
GlaI	GCGC	2 cut(s)	96, 346
GluI	GCNGC	2 cut(s)	240, 952
GsuI	CTGGAG	2 cut(s)	264, 802
HaeII	RGCGCY	1 cut(s)	348
HaeIII	GGCC	6 cut(s)	5, 206, 365, 398, 428, 592
HapII	CCGG	8 cut(s)	143, 175, 209, 269, 278, 361, 413, 477
HgaI	GACGC	1 cut(s)	323
HhaI	GCGC	2 cut(s)	97, 347
Hin1II	CATG	1 cut(s)	870
Hin6I	GCGC	2 cut(s)	95, 345
HinP1I	GCGC	2 cut(s)	95, 345
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	9 cut(s)	40, 111, 200, 409, 454, 548, 701, 863, 964
HpaII	CCGG	8 cut(s)	143, 175, 209, 269, 278, 361, 413, 477
HphI	GGTGA	6 cut(s)	39, 53, 64, 529, 688, 766
Hpy166II	GTNNAC	3 cut(s)	190, 313, 465
Hpy188I	TCNGA	8 cut(s)	110, 164, 182, 220, 232, 420, 638, 903
Hpy188III	TCNNGA	3 cut(s)	289, 498, 893
Hpy8I	GTNNAC	3 cut(s)	190, 313, 465
Hpy99I	CGWCG	1 cut(s)	236
HpyAV	CCTTC	7 cut(s)	16, 93, 295, 514, 665, 769, 941
HpyCH4III	ACNGT	1 cut(s)	565
HpyCH4IV	ACGT	2 cut(s)	58, 234
HpyCH4V	TGCA	3 cut(s)	36, 755, 806
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 274, 351, 655
HpyF3I	CTNAG	4 cut(s)	15, 273, 341, 645
HpySE526I	ACGT	2 cut(s)	58, 234
Hsp92II	CATG	1 cut(s)	870
HspAI	GCGC	2 cut(s)	95, 345
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	889
Kzo9I	GATC	5 cut(s)	177, 285, 331, 843, 889
LmnI	GCTCC	4 cut(s)	223, 245, 421, 959
Lsp1109I	GCAGC	2 cut(s)	251, 963
MaeI	CTAG	1 cut(s)	707
MaeII	ACGT	2 cut(s)	58, 234
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	5 cut(s)	179, 287, 333, 845, 891
MboI	GATC	5 cut(s)	177, 285, 331, 843, 889
MboII	GAAGA	4 cut(s)	310, 500, 731, 754
MfeI	CAATTG	1 cut(s)	389
MflI	RGATCY	2 cut(s)	177, 285
MhlI	GDGCHC	2 cut(s)	342, 939
MluCI	AATT	2 cut(s)	26, 389
MluI	ACGCGT	1 cut(s)	315
MlyI	GAGTC	7 cut(s)	34, 105, 209, 403, 542, 695, 958
MmeI	TCCRAC	4 cut(s)	162, 187, 255, 443
MroNI	GCCGGC	1 cut(s)	268
MseI	TTAA	1 cut(s)	834
MspA1I	CMGCKG	1 cut(s)	242
MspI	CCGG	8 cut(s)	143, 175, 209, 269, 278, 361, 413, 477
MspR9I	CCNGG	5 cut(s)	143, 175, 209, 361, 362
MunI	CAATTG	1 cut(s)	389
MvnI	CGCG	3 cut(s)	95, 170, 317
MwoI	GCNNNNNNNGC	4 cut(s)	245, 274, 351, 655
NaeI	GCCGGC	1 cut(s)	270
NciI	CCSGG	5 cut(s)	143, 175, 209, 361, 362
NdeII	GATC	5 cut(s)	177, 285, 331, 843, 889
NgoMIV	GCCGGC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	870
NlaIV	GGNNCC	5 cut(s)	179, 207, 225, 247, 417
NmeAIII	GCCGAG	1 cut(s)	391
NmuCI	GTSAC	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	428
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	454, 863
PkrI	GCNGC	2 cut(s)	241, 953
PleI	GAGTC	7 cut(s)	34, 105, 208, 403, 542, 695, 958
PpsI	GAGTC	7 cut(s)	34, 105, 208, 403, 542, 695, 958
PspN4I	GGNNCC	5 cut(s)	179, 207, 225, 247, 417
PspPI	GGNCC	4 cut(s)	205, 363, 397, 590
PsuI	RGATCY	2 cut(s)	177, 285
PvuII	CAGCTG	1 cut(s)	242
RsaI	GTAC	1 cut(s)	464
RsaNI	GTAC	1 cut(s)	463
SaqAI	TTAA	1 cut(s)	834
SatI	GCNGC	2 cut(s)	240, 952
Sau3AI	GATC	5 cut(s)	177, 285, 331, 843, 889
Sau96I	GGNCC	4 cut(s)	205, 363, 397, 590
SchI	GAGTC	7 cut(s)	34, 105, 209, 403, 542, 695, 958
ScrFI	CCNGG	5 cut(s)	143, 175, 209, 361, 362
SduI	GDGCHC	2 cut(s)	342, 939
SmaI	CCCGGG	1 cut(s)	362
SmlI	CTYRAG	2 cut(s)	659, 847
SmoI	CTYRAG	2 cut(s)	659, 847
Sse9I	AATT	2 cut(s)	26, 389
SseBI	AGGCCT	1 cut(s)	428
SsiI	CCGC	3 cut(s)	67, 168, 260
SspMI	CTAG	1 cut(s)	707
StuI	AGGCCT	1 cut(s)	428
StyD4I	CCNGG	5 cut(s)	141, 173, 207, 359, 360
TaaI	ACNGT	1 cut(s)	565
TaiI	ACGT	2 cut(s)	61, 237
TaqI	TCGA	5 cut(s)	290, 375, 546, 842, 908
TaqII	GACCGA	1 cut(s)	437
TasI	AATT	2 cut(s)	26, 389
TfiI	GAWTC	2 cut(s)	454, 863
Tru1I	TTAA	1 cut(s)	834
Tru9I	TTAA	1 cut(s)	834
TscAI	CASTG	2 cut(s)	796, 931
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	239, 951
Tsp45I	GTSAC	1 cut(s)	59
TspGWI	ACGGA	1 cut(s)	477
TspMI	CCCGGG	1 cut(s)	360
TspRI	CASTG	2 cut(s)	796, 931
XmaI	CCCGGG	1 cut(s)	360
XspI	CTAG	1 cut(s)	707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.