Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Reverse (-)

11765803 .. 11767422

Gene Structure 1620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGCGACGGTACAATTGTCCACCCAATTTAGCTGCCAAACCAGAGTTTCAATCTCACCGAACTCTAAATCTATCTCCAAGCCTCCGTTTCTGGTACCGGTGACCTCAATTATTCACCGCCCGATGATCTCCACCGGAGGAATCGCTGTTTCCCCCCGTAGAGTTTTCAAAGTCCGAGCCACAGATACGGGAGAGATAGGATCAGCTCTATTGGCGGCGGAGGAAGCAATTGAAGACGTGGAAGAGACGGAGCGGCTAAAGAGATCGCTCGTGGATTCGTTGTACGGAACAGATCGAGGTTTAAGCGCATCGAGCGAAACCAGAGCTGAAATCGGAGATCTAATCACACAGCTCGAGTCTAAGAACCCTACTCCAGCTCCGACGGAAGCTCTTTTCCTTCTCAACGGCAAATGGATCCTCGCCTACACATCGTTCGTGAATTTGTTCCCGTTGCTATCACGAGGAATCGTACCGTTAATAAAAGTCGATGAGATCTCTCAAACCATTGATTCAGATAACTTCACCGTCCAGAACTCTGTTCGTTTCGCTGGTCCTTTAGGTACAAACTCGATTAGCACCAACGCTAAATTCGAAATCCGAAGCCCTAAACGCGTCCAGATTAAGTTTGAGCAAGGCGTAATTGGGACGCCTCAGCTAACGGATTCTATTGAGATACCGGAATATGTAGAGGTTCTTGGTCAAAAGATTGATCTTAACCCGATCAGAGGGTTACTTACCTCGGTGCAAGACACAGCCTCGTCTGTGGCTAGAACCATATCAAGCCAACCACCGTTGAAATTCTCTTTGCCGGCGGACAATGCGCAGTCTTGGCTACTCACGACTTATCTAGACAAAGACATTCGGATCTCTAGAGGAGACGGTGGAAGTGTCTTTGTGCTTATCAAAGAAGGAAGCCCTCTCTTGAATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

310

Amino Acids

33.65

Weight (kDa)

5.67

Isoelectric Point (pI)

41.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	85 - 300	4.8e-81	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	822
Acc65I	GGTACC	1 cut(s)	94
AccB1I	GGYRCC	1 cut(s)	94
AccBSI	CCGCTC	1 cut(s)	253
AccII	CGCG	1 cut(s)	612
AciI	CCGC	5 cut(s)	118, 215, 218, 253, 812
AclWI	GGATC	4 cut(s)	208, 409, 422, 872
AcsI	RAATTY	3 cut(s)	439, 587, 797
AcyI	GRCGYC	1 cut(s)	647
AfaI	GTAC	5 cut(s)	12, 96, 284, 471, 562
AfiI	CCNNNNNNNGG	1 cut(s)	725
AflIII	ACRYGT	1 cut(s)	610
AgeI	ACCGGT	1 cut(s)	97
AgsI	TTSAA	5 cut(s)	51, 169, 233, 796, 925
AjiI	CACGTC	1 cut(s)	238
AjuI	GAANNNNNNNTTGG	2 cut(s)	572, 604
AluBI	AGCT	7 cut(s)	33, 206, 326, 352, 377, 389, 655
AluI	AGCT	7 cut(s)	33, 206, 326, 352, 377, 389, 655
Alw26I	GTCTC	2 cut(s)	239, 870
AlwI	GGATC	4 cut(s)	208, 409, 422, 872
Ama87I	CYCGRG	1 cut(s)	353
ApeKI	GCWGC	1 cut(s)	33
ApoI	RAATTY	3 cut(s)	439, 587, 797
AsiGI	ACCGGT	1 cut(s)	97
Asp700I	GAANNNNTTC	1 cut(s)	443
Asp718I	GGTACC	1 cut(s)	94
AspLEI	GCGC	2 cut(s)	308, 823
AspS9I	GGNCC	1 cut(s)	551
AsuHPI	GGTGA	4 cut(s)	48, 107, 112, 514
AsuII	TTCGAA	1 cut(s)	591
AvaI	CYCGRG	1 cut(s)	353
AvaII	GGWCC	1 cut(s)	551
BaeI	ACNNNNGTAYC	1 cut(s)	35
BamHI	GGATCC	1 cut(s)	414
BanI	GGYRCC	1 cut(s)	94
BauI	CACGAG	2 cut(s)	269, 459
BbsI	GAAGAC	1 cut(s)	240
BbvCI	CCTCAGC	1 cut(s)	651
BbvI	GCAGC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	421
BcoDI	GTCTC	2 cut(s)	239, 870
BfaI	CTAG	3 cut(s)	768, 848, 870
BglII	AGATCT	2 cut(s)	337, 492
BisI	GCNGC	3 cut(s)	34, 216, 254
BlsI	GCNGC	3 cut(s)	35, 217, 255
Bme18I	GGWCC	1 cut(s)	551
BmeT110I	CYCGRG	1 cut(s)	353
BmgBI	CACGTC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	551
BmiI	GGNNCC	2 cut(s)	96, 416
BmsI	GCATC	1 cut(s)	317
BpiI	GAAGAC	1 cut(s)	240
BpmI	CTGGAG	1 cut(s)	357
Bpu10I	CCTNAGC	1 cut(s)	651
Bpu14I	TTCGAA	1 cut(s)	591
BsaHI	GRCGYC	1 cut(s)	647
BsaJI	CCNNGG	1 cut(s)	738
BsaWI	WCCGGW	3 cut(s)	97, 134, 676
BsaXI	ACNNNNNCTCC	2 cut(s)	361, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse118I	RCCGGY	2 cut(s)	97, 808
BseDI	CCNNGG	1 cut(s)	738
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMII	CTCAG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	888
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	612
BshNI	GGYRCC	1 cut(s)	94
BshTI	ACCGGT	1 cut(s)	97
BsiHKCI	CYCGRG	1 cut(s)	353
BsiSI	CCGG	4 cut(s)	98, 135, 677, 809
BslFI	GGGAC	1 cut(s)	658
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	2 cut(s)	239, 870
BsmBI	CGTCTC	2 cut(s)	239, 870
BsmFI	GGGAC	1 cut(s)	658
BsoBI	CYCGRG	1 cut(s)	353
Bsp119I	TTCGAA	1 cut(s)	591
BspACI	CCGC	5 cut(s)	118, 215, 218, 253, 812
BspCNI	CTCAG	1 cut(s)	664
BspFNI	CGCG	1 cut(s)	612
BspLI	GGNNCC	2 cut(s)	96, 416
BspPI	GGATC	4 cut(s)	208, 409, 422, 872
BspT104I	TTCGAA	1 cut(s)	591
BspT107I	GGYRCC	1 cut(s)	94
BsrBI	CCGCTC	1 cut(s)	253
BsrFI	RCCGGY	2 cut(s)	97, 808
BssAI	RCCGGY	2 cut(s)	97, 808
BssECI	CCNNGG	1 cut(s)	738
BssNI	GRCGYC	1 cut(s)	647
BssSI	CACGAG	2 cut(s)	269, 459
Bst2BI	CACGAG	2 cut(s)	269, 459
Bst4CI	ACNGT	5 cut(s)	10, 474, 526, 792, 881
Bst6I	CTCTTC	1 cut(s)	237
BstACI	GRCGYC	1 cut(s)	647
BstBI	TTCGAA	1 cut(s)	591
BstC8I	GCNNGC	1 cut(s)	810
BstDEI	CTNAG	2 cut(s)	360, 651
BstEII	GGTNACC	1 cut(s)	100
BstFNI	CGCG	1 cut(s)	612
BstHHI	GCGC	2 cut(s)	308, 823
BstMAI	GTCTC	2 cut(s)	239, 870
BstMWI	GCNNNNNNNGC	6 cut(s)	212, 224, 312, 609, 818, 829
BstPI	GGTNACC	1 cut(s)	100
BstUI	CGCG	1 cut(s)	612
BstV1I	GCAGC	1 cut(s)	20
BstV2I	GAAGAC	1 cut(s)	240
BstX2I	RGATCY	4 cut(s)	337, 414, 492, 864
BstYI	RGATCY	4 cut(s)	337, 414, 492, 864
BtrI	CACGTC	1 cut(s)	238
Cac8I	GCNNGC	1 cut(s)	810
CfoI	GCGC	2 cut(s)	308, 823
Cfr10I	RCCGGY	2 cut(s)	97, 808
Cfr13I	GGNCC	1 cut(s)	551
CseI	GACGC	2 cut(s)	601, 655
Csp6I	GTAC	5 cut(s)	11, 95, 283, 470, 561
CspAI	ACCGGT	1 cut(s)	97
CviQI	GTAC	5 cut(s)	11, 95, 283, 470, 561
DdeI	CTNAG	2 cut(s)	360, 651
Eam1104I	CTCTTC	1 cut(s)	237
EarI	CTCTTC	1 cut(s)	237
EciI	GGCGGA	2 cut(s)	233, 827
Eco47I	GGWCC	1 cut(s)	551
Eco88I	CYCGRG	1 cut(s)	353
Eco91I	GGTNACC	1 cut(s)	100
EcoO65I	GGTNACC	1 cut(s)	100
Esp3I	CGTCTC	2 cut(s)	239, 870
FaiI	YATR	2 cut(s)	684, 776
FaqI	GGGAC	1 cut(s)	658
Fnu4HI	GCNGC	3 cut(s)	34, 216, 254
Fsp4HI	GCNGC	3 cut(s)	34, 216, 254
FspBI	CTAG	3 cut(s)	768, 848, 870
FspI	TGCGCA	1 cut(s)	822
GlaI	GCGC	2 cut(s)	307, 822
GluI	GCNGC	3 cut(s)	34, 216, 254
GsuI	CTGGAG	1 cut(s)	357
HapII	CCGG	4 cut(s)	98, 135, 677, 809
HgaI	GACGC	2 cut(s)	601, 655
HhaI	GCGC	2 cut(s)	308, 823
Hin1I	GRCGYC	1 cut(s)	647
Hin6I	GCGC	2 cut(s)	306, 821
HinP1I	GCGC	2 cut(s)	306, 821
HinfI	GANTC	7 cut(s)	141, 275, 356, 465, 509, 662, 925
HpaII	CCGG	4 cut(s)	98, 135, 677, 809
HphI	GGTGA	4 cut(s)	48, 107, 112, 514
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	7 cut(s)	176, 335, 381, 514, 599, 725, 864
Hpy188III	TCNNGA	8 cut(s)	436, 459, 529, 616, 838, 848, 870, 922
Hpy8I	GTNNAC	1 cut(s)	21
Hpy99I	CGWCG	2 cut(s)	10, 385
HpyAV	CCTTC	2 cut(s)	407, 902
HpyCH4III	ACNGT	5 cut(s)	10, 474, 526, 792, 881
HpyCH4IV	ACGT	1 cut(s)	237
HpyCH4V	TGCA	1 cut(s)	745
HpyF10VI	GCNNNNNNNGC	6 cut(s)	212, 224, 312, 609, 818, 829
HpyF3I	CTNAG	2 cut(s)	360, 651
HpySE526I	ACGT	1 cut(s)	237
Hsp92I	GRCGYC	1 cut(s)	647
HspAI	GCGC	2 cut(s)	306, 821
KpnI	GGTACC	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	808
KroNI	GCCGGC	1 cut(s)	810
LmnI	GCTCC	2 cut(s)	250, 382
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	1 cut(s)	317
MaeI	CTAG	3 cut(s)	768, 848, 870
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	100, 729
MbiI	CCGCTC	1 cut(s)	253
MboII	GAAGA	2 cut(s)	245, 254
MfeI	CAATTG	2 cut(s)	14, 228
MflI	RGATCY	4 cut(s)	337, 414, 492, 864
MluCI	AATT	8 cut(s)	14, 26, 108, 228, 439, 587, 639, 797
MluI	ACGCGT	1 cut(s)	610
MlyI	GAGTC	1 cut(s)	365
MmeI	TCCRAC	1 cut(s)	404
MroNI	GCCGGC	1 cut(s)	808
MroXI	GAANNNNTTC	1 cut(s)	443
MseI	TTAA	4 cut(s)	302, 476, 621, 714
MspI	CCGG	4 cut(s)	98, 135, 677, 809
MunI	CAATTG	2 cut(s)	14, 228
MvnI	CGCG	1 cut(s)	612
MwoI	GCNNNNNNNGC	6 cut(s)	212, 224, 312, 609, 818, 829
NaeI	GCCGGC	1 cut(s)	810
NgoMIV	GCCGGC	1 cut(s)	808
NlaIV	GGNNCC	2 cut(s)	96, 416
NmuCI	GTSAC	1 cut(s)	100
NsbI	TGCGCA	1 cut(s)	822
NspV	TTCGAA	1 cut(s)	591
PaeR7I	CTCGAG	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	588
PdiI	GCCGGC	1 cut(s)	810
PdmI	GAANNNNTTC	1 cut(s)	443
PfeI	GAWTC	6 cut(s)	141, 275, 465, 509, 662, 925
PinAI	ACCGGT	1 cut(s)	97
PkrI	GCNGC	3 cut(s)	35, 217, 255
PleI	GAGTC	1 cut(s)	364
PpsI	GAGTC	1 cut(s)	364
PspEI	GGTNACC	1 cut(s)	100
PspN4I	GGNNCC	2 cut(s)	96, 416
PspPI	GGNCC	1 cut(s)	551
PspXI	VCTCGAGB	1 cut(s)	353
PsuI	RGATCY	4 cut(s)	337, 414, 492, 864
RsaI	GTAC	5 cut(s)	12, 96, 284, 471, 562
RsaNI	GTAC	5 cut(s)	11, 95, 283, 470, 561
SaqAI	TTAA	4 cut(s)	302, 476, 621, 714
SatI	GCNGC	3 cut(s)	34, 216, 254
Sau96I	GGNCC	1 cut(s)	551
SchI	GAGTC	1 cut(s)	365
SfaNI	GCATC	1 cut(s)	317
Sfr274I	CTCGAG	1 cut(s)	353
SfuI	TTCGAA	1 cut(s)	591
SinI	GGWCC	1 cut(s)	551
SlaI	CTCGAG	1 cut(s)	353
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	8 cut(s)	14, 26, 108, 228, 439, 587, 639, 797
SsiI	CCGC	5 cut(s)	118, 215, 218, 253, 812
SspMI	CTAG	3 cut(s)	768, 848, 870
TaaI	ACNGT	5 cut(s)	10, 474, 526, 792, 881
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	6 cut(s)	295, 311, 354, 486, 569, 591
TasI	AATT	8 cut(s)	14, 26, 108, 228, 439, 587, 639, 797
TauI	GCSGC	2 cut(s)	218, 256
TfiI	GAWTC	6 cut(s)	141, 275, 465, 509, 662, 925
Tru1I	TTAA	4 cut(s)	302, 476, 621, 714
Tru9I	TTAA	4 cut(s)	302, 476, 621, 714
TseFI	GTSAC	1 cut(s)	100
TseI	GCWGC	1 cut(s)	33
Tsp45I	GTSAC	1 cut(s)	100
TspGWI	ACGGA	5 cut(s)	75, 263, 300, 398, 674
VpaK11BI	GGWCC	1 cut(s)	551
XapI	RAATTY	3 cut(s)	439, 587, 797
XbaI	TCTAGA	2 cut(s)	847, 869
XhoI	CTCGAG	1 cut(s)	353
XmnI	GAANNNNTTC	1 cut(s)	443
XspI	CTAG	3 cut(s)	768, 848, 870

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.