Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000378.1

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Forward (+)

7352 .. 8471

Gene Structure 1120 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000378.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

atggccttcgtctctcagctaaaccaattcccctgcaaaactctcttagtaactccacgtcacccccgcctcacctccaagcctttaactactttggcgccaaactccgtcggactcgccacccccaaattgacactctccaacccggaatacccacaagccatccgacccgcgacccggatccgagccattgacgaggacgagtcggccccggaaacctcggaggagccgtccggcgtggcagctggagccgtggctgtggcggagaagccggctgagccggaggagatctcgaaactgaagaaggttctggtggacgcgttttacgggactgatcttgggctcagcgccaccagcgagacccgggccgagattgtagagcttattacccaattggaggtccaaaacccgactccggctccgaccgaggccttgcctctccttaacgggaaatggattctggcgtacacatcttttgctggtttgtttccgttattgtccagaggaactcttcctttggtgaaggttgatgaggtttcgcagactatcgactcccagaacttcacagttgaaaactctgttcggttttccgggcctttggctacaacttctttcagcaccaatgccacttttgatgtccgaagtcctaagtgtgttcagctcaagtttgaggaaggggtgattggcactccacagctaacagactcgctagtgataccagaagatgttgagtttttgggacagaagatagaccttgcacccttcaagggtttgctcacctctgtccaagacactgcttcctcggttgcaaagtccatctccagccaacccccgtttaagttttcgatctcaagtagcaaggccggtactttcaggaacatgagatgtaattttctataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

299

Amino Acids

32.18

Weight (kDa)

5.17

Isoelectric Point (pI)

36.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccII	CGCG	2 cut(s)	173, 320
AciI	CCGC	3 cut(s)	67, 171, 263
AclWI	GGATC	2 cut(s)	175, 188
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	467, 868
AfiI	CCNNNNNNNGG	4 cut(s)	177, 397, 415, 767
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	572, 766
AjiI	CACGTC	1 cut(s)	59
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	5 cut(s)	19, 245, 382, 661, 697
AluI	AGCT	5 cut(s)	19, 245, 382, 661, 697
Alw26I	GTCTC	2 cut(s)	16, 353
AlwI	GGATC	2 cut(s)	175, 188
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	6 cut(s)	3, 207, 366, 429, 593, 861
ApeKI	GCWGC	1 cut(s)	242
AspLEI	GCGC	2 cut(s)	100, 350
AspS9I	GGNCC	4 cut(s)	208, 366, 400, 593
AsuC2I	CCSGG	6 cut(s)	146, 178, 212, 364, 365, 592
AsuHPI	GGTGA	5 cut(s)	53, 64, 532, 691, 769
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	400
BamHI	GGATCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	254
BccI	CCATC	2 cut(s)	170, 824
BceAI	ACGGC	2 cut(s)	214, 236
BcnI	CCSGG	6 cut(s)	146, 178, 212, 364, 365, 592
BcoDI	GTCTC	2 cut(s)	16, 353
BfaI	CTAG	1 cut(s)	710
BfoI	RGCGCY	2 cut(s)	101, 351
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	1 cut(s)	243
BlpI	GCTNAGC	2 cut(s)	276, 344
BlsI	GCNGC	1 cut(s)	244
Bme1390I	CCNGG	6 cut(s)	146, 178, 212, 364, 365, 592
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	363
BmgBI	CACGTC	1 cut(s)	59
BmgT120I	GGNCC	4 cut(s)	208, 366, 400, 593
BmiI	GGNNCC	6 cut(s)	99, 182, 210, 228, 250, 420
BmrFI	CCNGG	6 cut(s)	146, 178, 212, 364, 365, 592
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpmI	CTGGAG	2 cut(s)	267, 805
Bpu1102I	GCTNAGC	2 cut(s)	276, 344
BpuEI	CTTGAG	2 cut(s)	647, 835
BpuMI	CCSGG	6 cut(s)	146, 178, 212, 364, 365, 592
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	6 cut(s)	210, 219, 252, 363, 426, 801
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 403, 433
Bsc4I	CCNNNNNNNGG	4 cut(s)	177, 397, 415, 767
Bse118I	RCCGGY	2 cut(s)	271, 863
BseDI	CCNNGG	6 cut(s)	210, 219, 252, 363, 426, 801
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	4 cut(s)	177, 397, 415, 767
BseMII	CTCAG	3 cut(s)	29, 267, 358
BseRI	GAGGAG	2 cut(s)	239, 299
BseXI	GCAGC	1 cut(s)	254
Bsh1236I	CGCG	2 cut(s)	173, 320
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	363
BslFI	GGGAC	2 cut(s)	343, 753
BslI	CCNNNNNNNGG	4 cut(s)	177, 397, 415, 767
BsmAI	GTCTC	2 cut(s)	16, 353
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	343, 753
BsnI	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	180, 288, 334, 846
Bsp1720I	GCTNAGC	2 cut(s)	276, 344
BspACI	CCGC	3 cut(s)	67, 171, 263
BspANI	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
BspCNI	CTCAG	3 cut(s)	28, 268, 357
BspFNI	CGCG	2 cut(s)	173, 320
BspLI	GGNNCC	6 cut(s)	99, 182, 210, 228, 250, 420
BspPI	GGATC	2 cut(s)	175, 188
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	2 cut(s)	271, 863
BssAI	RCCGGY	2 cut(s)	271, 863
BssECI	CCNNGG	6 cut(s)	210, 219, 252, 363, 426, 801
BssMI	GATC	4 cut(s)	180, 288, 334, 846
BssNI	GRCGYC	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	1 cut(s)	516
BstACI	GRCGYC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	5 cut(s)	15, 46, 276, 344, 648
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	173, 320
BstH2I	RGCGCY	2 cut(s)	101, 351
BstHHI	GCGC	2 cut(s)	100, 350
BstKTI	GATC	4 cut(s)	183, 291, 337, 849
BstMAI	GTCTC	2 cut(s)	16, 353
BstMBI	GATC	4 cut(s)	180, 288, 334, 846
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 277, 354
BstSCI	CCNGG	6 cut(s)	144, 176, 210, 362, 363, 590
BstUI	CGCG	2 cut(s)	173, 320
BstV1I	GCAGC	1 cut(s)	254
BstX2I	RGATCY	2 cut(s)	180, 288
BstYI	RGATCY	2 cut(s)	180, 288
BsuRI	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
BtgI	CCRYGG	1 cut(s)	252
BtrI	CACGTC	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	1 cut(s)	792
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	2 cut(s)	100, 350
Cfr10I	RCCGGY	2 cut(s)	271, 863
Cfr13I	GGNCC	4 cut(s)	208, 366, 400, 593
Cfr9I	CCCGGG	1 cut(s)	363
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	466, 867
CviAII	CATG	1 cut(s)	880
CviQI	GTAC	2 cut(s)	466, 867
DdeI	CTNAG	5 cut(s)	15, 46, 276, 344, 648
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	4 cut(s)	182, 290, 336, 848
DpnII	GATC	4 cut(s)	180, 288, 334, 846
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
EciI	GGCGGA	1 cut(s)	278
Eco147I	AGGCCT	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	16
FaeI	CATG	1 cut(s)	883
FaiI	YATR	2 cut(s)	881, 898
FaqI	GGGAC	2 cut(s)	343, 753
FatI	CATG	1 cut(s)	879
FauI	CCCGC	2 cut(s)	74, 178
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	710
GlaI	GCGC	2 cut(s)	99, 349
GluI	GCNGC	1 cut(s)	243
GsuI	CTGGAG	2 cut(s)	267, 805
HaeII	RGCGCY	2 cut(s)	101, 351
HaeIII	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	2 cut(s)	100, 350
Hin1I	GRCGYC	1 cut(s)	98
Hin1II	CATG	1 cut(s)	883
Hin6I	GCGC	2 cut(s)	98, 348
HinP1I	GCGC	2 cut(s)	98, 348
HinfI	GANTC	6 cut(s)	114, 203, 412, 457, 551, 704
HphI	GGTGA	5 cut(s)	53, 64, 532, 691, 769
Hpy166II	GTNNAC	2 cut(s)	316, 468
Hpy188I	TCNGA	6 cut(s)	113, 167, 185, 223, 423, 641
Hpy188III	TCNNGA	3 cut(s)	292, 501, 874
Hpy8I	GTNNAC	2 cut(s)	316, 468
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	5 cut(s)	16, 298, 517, 668, 772
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	1 cut(s)	58
HpyCH4V	TGCA	3 cut(s)	36, 758, 809
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 277, 354
HpyF3I	CTNAG	5 cut(s)	15, 46, 276, 344, 648
HpySE526I	ACGT	1 cut(s)	58
Hsp92I	GRCGYC	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	883
HspAI	GCGC	2 cut(s)	98, 348
KasI	GGCGCC	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
Kzo9I	GATC	4 cut(s)	180, 288, 334, 846
LmnI	GCTCC	3 cut(s)	226, 248, 424
Lsp1109I	GCAGC	1 cut(s)	254
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	1 cut(s)	58
MaeIII	GTNAC	2 cut(s)	49, 59
MalI	GATC	4 cut(s)	182, 290, 336, 848
MboI	GATC	4 cut(s)	180, 288, 334, 846
MboII	GAAGA	4 cut(s)	313, 503, 734, 757
MfeI	CAATTG	1 cut(s)	392
MflI	RGATCY	2 cut(s)	180, 288
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	4 cut(s)	26, 128, 392, 889
MluI	ACGCGT	1 cut(s)	318
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	5 cut(s)	108, 212, 406, 545, 698
MmeI	TCCRAC	4 cut(s)	91, 165, 190, 446
MroNI	GCCGGC	1 cut(s)	271
MseI	TTAA	3 cut(s)	86, 444, 837
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	6 cut(s)	146, 178, 212, 364, 365, 592
MunI	CAATTG	1 cut(s)	392
MvnI	CGCG	2 cut(s)	173, 320
MwoI	GCNNNNNNNGC	3 cut(s)	248, 277, 354
NaeI	GCCGGC	1 cut(s)	273
NarI	GGCGCC	1 cut(s)	98
NciI	CCSGG	6 cut(s)	146, 178, 212, 364, 365, 592
NdeII	GATC	4 cut(s)	180, 288, 334, 846
NgoMIV	GCCGGC	1 cut(s)	271
NlaIII	CATG	1 cut(s)	883
NlaIV	GGNNCC	6 cut(s)	99, 182, 210, 228, 250, 420
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	273
PfeI	GAWTC	1 cut(s)	457
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	5 cut(s)	108, 211, 406, 545, 698
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	5 cut(s)	108, 211, 406, 545, 698
PspN4I	GGNNCC	6 cut(s)	99, 182, 210, 228, 250, 420
PspPI	GGNCC	4 cut(s)	208, 366, 400, 593
PsuI	RGATCY	2 cut(s)	180, 288
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	467, 868
RsaNI	GTAC	2 cut(s)	466, 867
SaqAI	TTAA	3 cut(s)	86, 444, 837
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	4 cut(s)	180, 288, 334, 846
Sau96I	GGNCC	4 cut(s)	208, 366, 400, 593
SchI	GAGTC	5 cut(s)	108, 212, 406, 545, 698
ScrFI	CCNGG	6 cut(s)	146, 178, 212, 364, 365, 592
SduI	GDGCHC	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	400
SmaI	CCCGGG	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	662, 850
SmoI	CTYRAG	2 cut(s)	662, 850
Sse9I	AATT	4 cut(s)	26, 128, 392, 889
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	3 cut(s)	67, 171, 263
SspDI	GGCGCC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	710
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	6 cut(s)	144, 176, 210, 362, 363, 590
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	1 cut(s)	61
TaqI	TCGA	3 cut(s)	293, 549, 845
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	4 cut(s)	26, 128, 392, 889
TfiI	GAWTC	1 cut(s)	457
Tru1I	TTAA	3 cut(s)	86, 444, 837
Tru9I	TTAA	3 cut(s)	86, 444, 837
TscAI	CASTG	1 cut(s)	799
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	1 cut(s)	242
Tsp45I	GTSAC	1 cut(s)	59
TspGWI	ACGGA	2 cut(s)	97, 480
TspMI	CCCGGG	1 cut(s)	363
TspRI	CASTG	1 cut(s)	799
VpaK11BI	GGWCC	1 cut(s)	400
XmaI	CCCGGG	1 cut(s)	363
XspI	CTAG	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.