Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Forward (+)

652731 .. 654386

Gene Structure 1656 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G014000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCCTTCGCTTCGCAGCTAAACCAATTCCCCTGCAAGACGCTATCGCTAAACCCAGCGCACCACCGTCTCGCCTCCAAGCCCTTTTCCCTCTTGTTCGCGCCAAACTCTAACGTGCTCGCCGCCAAATTCAACAACCAACTGAAATTCTCCACCCATGAGTTCGTCGGGACCCGACCTGCTACCCGGCTCCGGGTGGTGGACGAGGACGAATGGGGCCCCGAGAAGGAGACCGAGTCGGCTGTGGCTGTGGCCGAGGATGACAAGCCGGCTGAGCCCGAGTCAGCCGAAACCAGTAGGCTGAAGAAGGCTCTGGTAGACTCGTTTTACGGAACTGATCGTGGACTGAGCGCTACCAGCGAGACCCGGGCCGAGATTGTGGAGCTTATTACTCAGTTGGAGGCCCAAAACCCGACCCCGGCTCCGACCGAGGCTTTGCCTCTGCTCAATGGCAAATGGATTCTAGCGTACACTTCGTTTGCAGGTCTGTTTCCATTGTTGTCCAGAGGAACGCTTCCATTGGTGAAGGTCGAGGAGGTTTCGCAGACGATTGACTCTGAGAATTTCACCGTACAAAATTCTGTTCAGTTTGCTGGGCCATTAGCTACCACTTCTTTCAGCACTAACGCCACATTTGAAGTTCGAAGCCCAAAGCGCGTCCAGATTAAGTTTGAAGAAGGCGTAATTGGGACTCCCCAGCTGACTGACTCGCTAGTGATACCAGAAAATGTTGAGTTTCTAGGACAAAAACTCGACCTCACAGTCTTCAAAAGTTTGCTCACCTCTGTTCAAGACACTGCTTCATCTGTTGTAAAGACCATATCCAGCCAACCCCCGTTTAAGTTTTCCATCTCAAACAGCAAAGCTGAATCATGGTTGCTAACCACATACCTTGATCCCGAGCTTCGGATTTCAAGGGGAGACAATGGCAGCGTGTTCGTGCTGATCAAGGAAGGCAGCTCCCTCTTGAGCCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

326

Amino Acids

35.51

Weight (kDa)

5.13

Isoelectric Point (pI)

34.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	761
Acc36I	ACCTGC	2 cut(s)	187, 473
AccI	GTMKAC	1 cut(s)	318
AccII	CGCG	2 cut(s)	101, 657
AciI	CCGC	1 cut(s)	123
AclWI	GGATC	1 cut(s)	890
AcoI	YGGCCR	1 cut(s)	252
AcsI	RAATTY	4 cut(s)	128, 146, 562, 577
AcuI	CTGAAG	1 cut(s)	323
AfaI	GTAC	2 cut(s)	470, 573
AfeI	AGCGCT	1 cut(s)	352
AfiI	CCNNNNNNNGG	6 cut(s)	192, 193, 199, 226, 418, 906
AgsI	TTSAA	6 cut(s)	133, 638, 674, 769, 791, 915
AjuI	GAANNNNNNNTTGG	2 cut(s)	669, 701
AluBI	AGCT	7 cut(s)	19, 385, 605, 700, 866, 904, 960
AluI	AGCT	7 cut(s)	19, 385, 605, 700, 866, 904, 960
Alw21I	GWGCWC	1 cut(s)	120
Alw26I	GTCTC	4 cut(s)	74, 224, 356, 915
AlwI	GGATC	1 cut(s)	890
Ama87I	CYCGRG	4 cut(s)	221, 278, 366, 899
Aor51HI	AGCGCT	1 cut(s)	352
AoxI	GGCC	6 cut(s)	3, 217, 252, 369, 402, 596
ApaI	GGGCCC	1 cut(s)	221
ApeKI	GCWGC	3 cut(s)	16, 930, 957
ApoI	RAATTY	4 cut(s)	128, 146, 562, 577
ArsI	GACNNNNNNTTYG	2 cut(s)	418, 450
AspLEI	GCGC	4 cut(s)	61, 103, 353, 657
AspS9I	GGNCC	6 cut(s)	171, 217, 218, 369, 403, 596
AsuC2I	CCSGG	5 cut(s)	187, 194, 367, 368, 419
AsuHPI	GGTGA	3 cut(s)	535, 559, 772
AsuII	TTCGAA	1 cut(s)	643
AvaI	CYCGRG	4 cut(s)	221, 278, 366, 899
AvaII	GGWCC	1 cut(s)	171
BaeGI	GKGCMC	1 cut(s)	221
BanII	GRGCYC	3 cut(s)	221, 279, 974
BbsI	GAAGAC	1 cut(s)	757
Bbv12I	GWGCWC	1 cut(s)	120
BbvI	GCAGC	3 cut(s)	28, 942, 969
BccI	CCATC	1 cut(s)	857
BcgI	CGANNNNNNTGC	2 cut(s)	919, 953
BclI	TGATCA	1 cut(s)	945
BcnI	CCSGG	5 cut(s)	187, 194, 367, 368, 419
BcoDI	GTCTC	4 cut(s)	74, 224, 356, 915
BfaI	CTAG	3 cut(s)	464, 713, 740
BfoI	RGCGCY	1 cut(s)	354
BfuAI	ACCTGC	2 cut(s)	187, 473
BisI	GCNGC	4 cut(s)	17, 123, 931, 958
BlpI	GCTNAGC	1 cut(s)	273
BlsI	GCNGC	4 cut(s)	18, 124, 932, 959
Bme1390I	CCNGG	5 cut(s)	187, 194, 367, 368, 419
Bme18I	GGWCC	1 cut(s)	171
BmeT110I	CYCGRG	4 cut(s)	221, 278, 366, 899
BmgT120I	GGNCC	6 cut(s)	171, 217, 218, 369, 403, 596
BmiI	GGNNCC	7 cut(s)	172, 173, 191, 218, 219, 220, 423
BmrFI	CCNGG	5 cut(s)	187, 194, 367, 368, 419
BpiI	GAAGAC	1 cut(s)	757
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	643
BpuMI	CCSGG	5 cut(s)	187, 194, 367, 368, 419
BsaI	GGTCTC	2 cut(s)	224, 356
BsaJI	CCNNGG	4 cut(s)	255, 366, 417, 429
BsaXI	ACNNNNNCTCC	4 cut(s)	221, 251, 406, 436
Bsc4I	CCNNNNNNNGG	6 cut(s)	192, 193, 199, 226, 418, 906
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	1 cut(s)	294
BseDI	CCNNGG	4 cut(s)	255, 366, 417, 429
BseGI	GGATG	1 cut(s)	265
BseLI	CCNNNNNNNGG	6 cut(s)	192, 193, 199, 226, 418, 906
BseMII	CTCAG	4 cut(s)	264, 338, 407, 549
BseNI	ACTGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	548
BseSI	GKGCMC	1 cut(s)	221
BseXI	GCAGC	3 cut(s)	28, 942, 969
BseYI	CCCAGC	3 cut(s)	55, 593, 696
Bsh1236I	CGCG	2 cut(s)	101, 657
Bsh1285I	CGRYCG	1 cut(s)	429
BshFI	GGCC	6 cut(s)	5, 219, 254, 371, 404, 598
BsiEI	CGRYCG	1 cut(s)	429
BsiHKAI	GWGCWC	1 cut(s)	120
BsiHKCI	CYCGRG	4 cut(s)	221, 278, 366, 899
BsiSI	CCGG	5 cut(s)	187, 193, 269, 367, 419
BslFI	GGGAC	2 cut(s)	184, 703
BslI	CCNNNNNNNGG	6 cut(s)	192, 193, 199, 226, 418, 906
BsmAI	GTCTC	4 cut(s)	74, 224, 356, 915
BsmBI	CGTCTC	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	184, 703
BsnI	GGCC	6 cut(s)	5, 219, 254, 371, 404, 598
Bso31I	GGTCTC	2 cut(s)	224, 356
BsoBI	CYCGRG	4 cut(s)	221, 278, 366, 899
Bsp119I	TTCGAA	1 cut(s)	643
Bsp120I	GGGCCC	1 cut(s)	217
Bsp1286I	GDGCHC	4 cut(s)	120, 221, 279, 974
Bsp143I	GATC	3 cut(s)	337, 895, 945
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	6 cut(s)	5, 219, 254, 371, 404, 598
BspCNI	CTCAG	4 cut(s)	265, 339, 406, 550
BspFNI	CGCG	2 cut(s)	101, 657
BspLI	GGNNCC	7 cut(s)	172, 173, 191, 218, 219, 220, 423
BspMI	ACCTGC	2 cut(s)	187, 473
BspPI	GGATC	1 cut(s)	890
BspT104I	TTCGAA	1 cut(s)	643
BspTNI	GGTCTC	2 cut(s)	224, 356
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	1 cut(s)	294
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	4 cut(s)	255, 366, 417, 429
BssMI	GATC	3 cut(s)	337, 895, 945
Bst4CI	ACNGT	3 cut(s)	68, 571, 763
BstBI	TTCGAA	1 cut(s)	643
BstC8I	GCNNGC	2 cut(s)	120, 270
BstDEI	CTNAG	4 cut(s)	273, 347, 393, 558
BstF5I	GGATG	1 cut(s)	265
BstFNI	CGCG	2 cut(s)	101, 657
BstH2I	RGCGCY	1 cut(s)	354
BstHHI	GCGC	4 cut(s)	61, 103, 353, 657
BstKTI	GATC	3 cut(s)	340, 898, 948
BstMAI	GTCTC	4 cut(s)	74, 224, 356, 915
BstMBI	GATC	3 cut(s)	337, 895, 945
BstMCI	CGRYCG	1 cut(s)	429
BstMWI	GCNNNNNNNGC	3 cut(s)	274, 357, 654
BstSCI	CCNGG	5 cut(s)	185, 192, 365, 366, 417
BstSLI	GKGCMC	1 cut(s)	221
BstUI	CGCG	2 cut(s)	101, 657
BstV1I	GCAGC	3 cut(s)	28, 942, 969
BstV2I	GAAGAC	1 cut(s)	757
BsuRI	GGCC	6 cut(s)	5, 219, 254, 371, 404, 598
BtsCI	GGATG	1 cut(s)	265
BtsI	GCAGTG	1 cut(s)	795
BtsIMutI	CAGTG	1 cut(s)	795
BveI	ACCTGC	2 cut(s)	187, 473
Cac8I	GCNNGC	2 cut(s)	120, 270
CfoI	GCGC	4 cut(s)	61, 103, 353, 657
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	6 cut(s)	171, 217, 218, 369, 403, 596
Cfr9I	CCCGGG	1 cut(s)	366
CseI	GACGC	2 cut(s)	49, 646
Csp6I	GTAC	2 cut(s)	469, 572
CspCI	CAANNNNNGTGG	2 cut(s)	874, 909
CviAII	CATG	2 cut(s)	158, 873
CviQI	GTAC	2 cut(s)	469, 572
DdeI	CTNAG	4 cut(s)	273, 347, 393, 558
DpnI	GATC	3 cut(s)	339, 897, 947
DpnII	GATC	3 cut(s)	337, 895, 945
DrdI	GACNNNNNNGTC	1 cut(s)	761
DseDI	GACNNNNNNGTC	1 cut(s)	761
EaeI	YGGCCR	1 cut(s)	252
Eco24I	GRGCYC	3 cut(s)	221, 279, 974
Eco31I	GGTCTC	2 cut(s)	224, 356
Eco47I	GGWCC	1 cut(s)	171
Eco47III	AGCGCT	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	323
Eco88I	CYCGRG	4 cut(s)	221, 278, 366, 899
EcoO109I	RGGNCCY	3 cut(s)	171, 217, 218
EcoT38I	GRGCYC	3 cut(s)	221, 279, 974
Esp3I	CGTCTC	1 cut(s)	74
FaeI	CATG	2 cut(s)	161, 876
FaiI	YATR	4 cut(s)	159, 821, 874, 889
FaqI	GGGAC	2 cut(s)	184, 703
FatI	CATG	2 cut(s)	157, 872
FbaI	TGATCA	1 cut(s)	945
FblI	GTMKAC	1 cut(s)	318
Fnu4HI	GCNGC	4 cut(s)	17, 123, 931, 958
FokI	GGATG	1 cut(s)	272
FriOI	GRGCYC	3 cut(s)	221, 279, 974
Fsp4HI	GCNGC	4 cut(s)	17, 123, 931, 958
FspBI	CTAG	3 cut(s)	464, 713, 740
GlaI	GCGC	4 cut(s)	60, 102, 352, 656
GluI	GCNGC	4 cut(s)	17, 123, 931, 958
GsaI	CCCAGC	3 cut(s)	59, 597, 700
HaeII	RGCGCY	1 cut(s)	354
HaeIII	GGCC	6 cut(s)	5, 219, 254, 371, 404, 598
HapII	CCGG	5 cut(s)	187, 193, 269, 367, 419
HgaI	GACGC	2 cut(s)	49, 646
HhaI	GCGC	4 cut(s)	61, 103, 353, 657
Hin1II	CATG	2 cut(s)	161, 876
Hin6I	GCGC	4 cut(s)	59, 101, 351, 655
HinP1I	GCGC	4 cut(s)	59, 101, 351, 655
HinfI	GANTC	8 cut(s)	236, 281, 320, 460, 554, 691, 707, 869
HpaII	CCGG	5 cut(s)	187, 193, 269, 367, 419
HphI	GGTGA	3 cut(s)	535, 559, 772
Hpy166II	GTNNAC	4 cut(s)	202, 319, 344, 471
Hpy188I	TCNGA	3 cut(s)	426, 559, 909
Hpy188III	TCNNGA	6 cut(s)	169, 504, 661, 791, 899, 967
Hpy8I	GTNNAC	4 cut(s)	202, 319, 344, 471
Hpy99I	CGWCG	1 cut(s)	170
HpyAV	CCTTC	6 cut(s)	16, 220, 301, 520, 671, 947
HpyCH4III	ACNGT	3 cut(s)	68, 571, 763
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	36, 482
HpyF10VI	GCNNNNNNNGC	3 cut(s)	274, 357, 654
HpyF3I	CTNAG	4 cut(s)	273, 347, 393, 558
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	161, 876
HspAI	GCGC	4 cut(s)	59, 101, 351, 655
KflI	GGGWCCC	1 cut(s)	171
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
Ksp22I	TGATCA	1 cut(s)	945
Kzo9I	GATC	3 cut(s)	337, 895, 945
LmnI	GCTCC	4 cut(s)	195, 382, 427, 965
Lsp1109I	GCAGC	3 cut(s)	28, 942, 969
MaeI	CTAG	3 cut(s)	464, 713, 740
MaeII	ACGT	1 cut(s)	114
MalI	GATC	3 cut(s)	339, 897, 947
MboI	GATC	3 cut(s)	337, 895, 945
MboII	GAAGA	3 cut(s)	316, 686, 757
MhlI	GDGCHC	4 cut(s)	120, 221, 279, 974
MluCI	AATT	6 cut(s)	26, 128, 146, 562, 577, 684
MlyI	GAGTC	6 cut(s)	245, 290, 314, 548, 685, 701
MmeI	TCCRAC	2 cut(s)	378, 449
MroNI	GCCGGC	1 cut(s)	268
MseI	TTAA	2 cut(s)	666, 840
MspA1I	CMGCKG	1 cut(s)	700
MspI	CCGG	5 cut(s)	187, 193, 269, 367, 419
MspR9I	CCNGG	5 cut(s)	187, 194, 367, 368, 419
MvnI	CGCG	2 cut(s)	101, 657
MwoI	GCNNNNNNNGC	3 cut(s)	274, 357, 654
NaeI	GCCGGC	1 cut(s)	270
NciI	CCSGG	5 cut(s)	187, 194, 367, 368, 419
NdeII	GATC	3 cut(s)	337, 895, 945
NgoMIV	GCCGGC	1 cut(s)	268
NlaIII	CATG	2 cut(s)	161, 876
NlaIV	GGNNCC	7 cut(s)	172, 173, 191, 218, 219, 220, 423
NmeAIII	GCCGAG	2 cut(s)	280, 397
NspV	TTCGAA	1 cut(s)	643
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	2 cut(s)	460, 869
PflFI	GACNNNGTC	1 cut(s)	235
PkrI	GCNGC	4 cut(s)	18, 124, 932, 959
PleI	GAGTC	6 cut(s)	244, 289, 314, 548, 685, 701
PpsI	GAGTC	6 cut(s)	244, 289, 314, 548, 685, 701
PpuMI	RGGWCCY	1 cut(s)	171
Psp5II	RGGWCCY	1 cut(s)	171
PspFI	CCCAGC	3 cut(s)	55, 593, 696
PspN4I	GGNNCC	7 cut(s)	172, 173, 191, 218, 219, 220, 423
PspOMI	GGGCCC	1 cut(s)	217
PspPI	GGNCC	6 cut(s)	171, 217, 218, 369, 403, 596
PspPPI	RGGWCCY	1 cut(s)	171
PsyI	GACNNNGTC	1 cut(s)	235
PvuII	CAGCTG	1 cut(s)	700
RsaI	GTAC	2 cut(s)	470, 573
RsaNI	GTAC	2 cut(s)	469, 572
SaqAI	TTAA	2 cut(s)	666, 840
SatI	GCNGC	4 cut(s)	17, 123, 931, 958
Sau3AI	GATC	3 cut(s)	337, 895, 945
Sau96I	GGNCC	6 cut(s)	171, 217, 218, 369, 403, 596
SchI	GAGTC	6 cut(s)	245, 290, 314, 548, 685, 701
ScrFI	CCNGG	5 cut(s)	187, 194, 367, 368, 419
SduI	GDGCHC	4 cut(s)	120, 221, 279, 974
SfuI	TTCGAA	1 cut(s)	643
SinI	GGWCC	1 cut(s)	171
SmaI	CCCGGG	1 cut(s)	368
SmlI	CTYRAG	1 cut(s)	967
SmoI	CTYRAG	1 cut(s)	967
Sse9I	AATT	6 cut(s)	26, 128, 146, 562, 577, 684
SsiI	CCGC	1 cut(s)	123
SspMI	CTAG	3 cut(s)	464, 713, 740
StyD4I	CCNGG	5 cut(s)	185, 192, 365, 366, 417
TaaI	ACNGT	3 cut(s)	68, 571, 763
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	3 cut(s)	531, 643, 753
TaqII	GACCGA	2 cut(s)	248, 443
TasI	AATT	6 cut(s)	26, 128, 146, 562, 577, 684
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	460, 869
Tru1I	TTAA	2 cut(s)	666, 840
Tru9I	TTAA	2 cut(s)	666, 840
TscAI	CASTG	1 cut(s)	802
TseI	GCWGC	3 cut(s)	16, 930, 957
TspDTI	ATGAA	1 cut(s)	792
TspGWI	ACGGA	1 cut(s)	345
TspMI	CCCGGG	1 cut(s)	366
TspRI	CASTG	1 cut(s)	802
Tth111I	GACNNNGTC	1 cut(s)	235
VpaK11BI	GGWCC	1 cut(s)	171
XapI	RAATTY	4 cut(s)	128, 146, 562, 577
XmaI	CCCGGG	1 cut(s)	366
XmiI	GTMKAC	1 cut(s)	318
XspI	CTAG	3 cut(s)	464, 713, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.