Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Forward (+)

983069 .. 985068

Gene Structure 2000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG015900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGCCTTCGTCTCTCAGCTAAACCAATTCCCCTGCAAGACTCTCTTAGTAACTCCACGTCACCCCCGCCTCACCTCCAAGCCTTTAACTACTTTGGCGCCAAACTCCGTCGGACTCGCCACCCCCAAATTGACACTCTCCAACCCGGAATACCCACAAGCCATCCGACCCGCGACCCGGATCCGAGCCATTGACGAGGACGAGTCGGCCCCGGAAACCTCGGAGGAGCCGTCCGGCGTGGCAGCTGGAGCCGTGGCAGTGGCGGAGAAGCCGGCTGAGCCGGAGGAGATCTCGAAACTGAAGAAGGTTCTGGTGGACGCGTTTTACGGGACTGATCTTGGGCTCAGCGCCACCAGCGAGACCCGGGCCGAGATTGTAGAGCTTATTACCCAATTGGAGGTCCAAAACCCGACTCCGGCTCCGACCGAGGCCTTGCCTCTCCTTAACGGGAAATGGATTCTGGCGTACACATCTTTTGCCGGTTTGTTTCCGTTATTGTCCAGAGGAACTCTTCCTTTGGTGAAGGTTGATGAGGTTTCGCAGACTATCGACTCCCAGAACTTCACAGTTGAAAACTCTGTTCGGTTTGCCGGGCCTTTGGCTACAACTTCTTTCAGCACCAATGCCACATTTGATGTCCGAAGTCCTAAGCGTGTTCAGCTCAAGTTTGAGGAAGGGGTGATTGGCACTCCACAGCTAACAGACTCGCTAGTGATACCAGAAGATGTTGAGTTTTTGGGACAGAAGATAGACCTTGCACCCTTCAAGGGTTTGCTCACGTCTGTCCAAGACACTGCTTCCTCAGTTGCAAAGTCCATCTCCAGCCAACCCCCGTTTAAGTTTTCGATCTCAAGTAGCAAGGCCGAATCGTGGTTGCTAACCACATACCTTGATCAAGAGCTTCGGATTTCGAGGGGAGACAATGGCAGTGTGTTTGTACTCATCAAGGAAGGCAGCTCCCTTTTGACTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

324

Amino Acids

34.9

Weight (kDa)

4.96

Isoelectric Point (pI)

38.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	99 - 314	5.4e-78	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	97
AccII	CGCG	2 cut(s)	173, 320
AciI	CCGC	3 cut(s)	67, 171, 263
AclWI	GGATC	2 cut(s)	175, 188
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	98
AfaI	GTAC	2 cut(s)	467, 939
AfiI	CCNNNNNNNGG	5 cut(s)	177, 397, 415, 767, 870
AflIII	ACRYGT	1 cut(s)	318
AgsI	TTSAA	2 cut(s)	572, 766
AjiI	CACGTC	2 cut(s)	59, 780
AjuI	GAANNNNNNNTTGG	2 cut(s)	666, 698
AluBI	AGCT	7 cut(s)	19, 245, 382, 661, 697, 901, 957
AluI	AGCT	7 cut(s)	19, 245, 382, 661, 697, 901, 957
Alw26I	GTCTC	3 cut(s)	16, 353, 912
AlwI	GGATC	2 cut(s)	175, 188
Ama87I	CYCGRG	1 cut(s)	363
AoxI	GGCC	6 cut(s)	3, 207, 366, 429, 593, 861
ApeKI	GCWGC	2 cut(s)	242, 954
AspLEI	GCGC	2 cut(s)	100, 350
AspS9I	GGNCC	4 cut(s)	208, 366, 400, 593
AsuC2I	CCSGG	6 cut(s)	146, 178, 212, 364, 365, 592
AsuHPI	GGTGA	4 cut(s)	53, 64, 532, 691
AvaI	CYCGRG	1 cut(s)	363
AvaII	GGWCC	1 cut(s)	400
BamHI	GGATCC	1 cut(s)	180
BanI	GGYRCC	1 cut(s)	97
BanII	GRGCYC	1 cut(s)	345
BbvI	GCAGC	2 cut(s)	254, 966
BccI	CCATC	2 cut(s)	170, 824
BceAI	ACGGC	2 cut(s)	214, 236
BclI	TGATCA	1 cut(s)	892
BcnI	CCSGG	6 cut(s)	146, 178, 212, 364, 365, 592
BcoDI	GTCTC	3 cut(s)	16, 353, 912
BfaI	CTAG	1 cut(s)	710
BfoI	RGCGCY	2 cut(s)	101, 351
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	2 cut(s)	243, 955
BlpI	GCTNAGC	2 cut(s)	276, 344
BlsI	GCNGC	2 cut(s)	244, 956
Bme1390I	CCNGG	6 cut(s)	146, 178, 212, 364, 365, 592
Bme18I	GGWCC	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	363
BmgBI	CACGTC	2 cut(s)	59, 780
BmgT120I	GGNCC	4 cut(s)	208, 366, 400, 593
BmiI	GGNNCC	6 cut(s)	99, 182, 210, 228, 250, 420
BmrFI	CCNGG	6 cut(s)	146, 178, 212, 364, 365, 592
BplI	GAGNNNNNCTC	2 cut(s)	275, 307
BpmI	CTGGAG	2 cut(s)	267, 805
Bpu10I	CCTNAGC	1 cut(s)	648
Bpu1102I	GCTNAGC	2 cut(s)	276, 344
BpuEI	CTTGAG	2 cut(s)	647, 835
BpuMI	CCSGG	6 cut(s)	146, 178, 212, 364, 365, 592
BsaHI	GRCGYC	1 cut(s)	98
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	5 cut(s)	210, 219, 252, 363, 426
BsaXI	ACNNNNNCTCC	4 cut(s)	215, 245, 403, 433
Bsc4I	CCNNNNNNNGG	5 cut(s)	177, 397, 415, 767, 870
Bse118I	RCCGGY	2 cut(s)	271, 479
BseDI	CCNNGG	5 cut(s)	210, 219, 252, 363, 426
BseGI	GGATG	1 cut(s)	162
BseLI	CCNNNNNNNGG	5 cut(s)	177, 397, 415, 767, 870
BseMII	CTCAG	4 cut(s)	29, 267, 358, 816
BseRI	GAGGAG	2 cut(s)	239, 299
BseXI	GCAGC	2 cut(s)	254, 966
Bsh1236I	CGCG	2 cut(s)	173, 320
Bsh1285I	CGRYCG	1 cut(s)	426
BshFI	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
BshNI	GGYRCC	1 cut(s)	97
BsiEI	CGRYCG	1 cut(s)	426
BsiHKCI	CYCGRG	1 cut(s)	363
BslFI	GGGAC	2 cut(s)	343, 753
BslI	CCNNNNNNNGG	5 cut(s)	177, 397, 415, 767, 870
BsmAI	GTCTC	3 cut(s)	16, 353, 912
BsmBI	CGTCTC	1 cut(s)	16
BsmFI	GGGAC	2 cut(s)	343, 753
BsnI	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
Bso31I	GGTCTC	1 cut(s)	353
BsoBI	CYCGRG	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	5 cut(s)	180, 288, 334, 846, 892
Bsp1720I	GCTNAGC	2 cut(s)	276, 344
BspACI	CCGC	3 cut(s)	67, 171, 263
BspANI	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
BspCNI	CTCAG	4 cut(s)	28, 268, 357, 815
BspFNI	CGCG	2 cut(s)	173, 320
BspLI	GGNNCC	6 cut(s)	99, 182, 210, 228, 250, 420
BspPI	GGATC	2 cut(s)	175, 188
BspT107I	GGYRCC	1 cut(s)	97
BspTNI	GGTCTC	1 cut(s)	353
BsrFI	RCCGGY	2 cut(s)	271, 479
BssAI	RCCGGY	2 cut(s)	271, 479
BssECI	CCNNGG	5 cut(s)	210, 219, 252, 363, 426
BssMI	GATC	5 cut(s)	180, 288, 334, 846, 892
BssNI	GRCGYC	1 cut(s)	98
Bst4CI	ACNGT	1 cut(s)	568
Bst6I	CTCTTC	1 cut(s)	516
BstACI	GRCGYC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	6 cut(s)	15, 46, 276, 344, 648, 802
BstDSI	CCRYGG	1 cut(s)	252
BstF5I	GGATG	1 cut(s)	162
BstFNI	CGCG	2 cut(s)	173, 320
BstH2I	RGCGCY	2 cut(s)	101, 351
BstHHI	GCGC	2 cut(s)	100, 350
BstKTI	GATC	5 cut(s)	183, 291, 337, 849, 895
BstMAI	GTCTC	3 cut(s)	16, 353, 912
BstMBI	GATC	5 cut(s)	180, 288, 334, 846, 892
BstMCI	CGRYCG	1 cut(s)	426
BstMWI	GCNNNNNNNGC	4 cut(s)	248, 277, 354, 658
BstSCI	CCNGG	6 cut(s)	144, 176, 210, 362, 363, 590
BstUI	CGCG	2 cut(s)	173, 320
BstV1I	GCAGC	2 cut(s)	254, 966
BstX2I	RGATCY	2 cut(s)	180, 288
BstYI	RGATCY	2 cut(s)	180, 288
BsuRI	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
BtgI	CCRYGG	1 cut(s)	252
BtrI	CACGTC	2 cut(s)	59, 780
BtsCI	GGATG	1 cut(s)	162
BtsI	GCAGTG	3 cut(s)	264, 792, 934
BtsIMutI	CAGTG	3 cut(s)	264, 792, 934
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	2 cut(s)	100, 350
Cfr10I	RCCGGY	2 cut(s)	271, 479
Cfr13I	GGNCC	4 cut(s)	208, 366, 400, 593
Cfr9I	CCCGGG	1 cut(s)	363
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	466, 938
CspCI	CAANNNNNGTGG	2 cut(s)	871, 906
CviQI	GTAC	2 cut(s)	466, 938
DdeI	CTNAG	6 cut(s)	15, 46, 276, 344, 648, 802
DinI	GGCGCC	1 cut(s)	99
DpnI	GATC	5 cut(s)	182, 290, 336, 848, 894
DpnII	GATC	5 cut(s)	180, 288, 334, 846, 892
Eam1104I	CTCTTC	1 cut(s)	516
EarI	CTCTTC	1 cut(s)	516
EciI	GGCGGA	1 cut(s)	278
Eco147I	AGGCCT	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	353
Eco47I	GGWCC	1 cut(s)	400
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	363
EcoT38I	GRGCYC	1 cut(s)	345
EgeI	GGCGCC	1 cut(s)	99
EheI	GGCGCC	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	16
FaiI	YATR	1 cut(s)	886
FalI	AAGNNNNNCTT	2 cut(s)	29, 61
FaqI	GGGAC	2 cut(s)	343, 753
FauI	CCCGC	2 cut(s)	74, 178
FbaI	TGATCA	1 cut(s)	892
Fnu4HI	GCNGC	2 cut(s)	243, 955
FokI	GGATG	1 cut(s)	149
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	243, 955
FspBI	CTAG	1 cut(s)	710
GlaI	GCGC	2 cut(s)	99, 349
GluI	GCNGC	2 cut(s)	243, 955
GsuI	CTGGAG	2 cut(s)	267, 805
HaeII	RGCGCY	2 cut(s)	101, 351
HaeIII	GGCC	6 cut(s)	5, 209, 368, 431, 595, 863
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	2 cut(s)	100, 350
Hin1I	GRCGYC	1 cut(s)	98
Hin6I	GCGC	2 cut(s)	98, 348
HinP1I	GCGC	2 cut(s)	98, 348
HinfI	GANTC	9 cut(s)	40, 114, 203, 412, 457, 551, 704, 866, 967
HphI	GGTGA	4 cut(s)	53, 64, 532, 691
Hpy166II	GTNNAC	2 cut(s)	316, 468
Hpy188I	TCNGA	7 cut(s)	113, 167, 185, 223, 423, 641, 906
Hpy188III	TCNNGA	3 cut(s)	292, 501, 896
Hpy8I	GTNNAC	2 cut(s)	316, 468
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	6 cut(s)	16, 298, 517, 668, 772, 944
HpyCH4III	ACNGT	1 cut(s)	568
HpyCH4IV	ACGT	2 cut(s)	58, 779
HpyCH4V	TGCA	3 cut(s)	36, 758, 809
HpyF10VI	GCNNNNNNNGC	4 cut(s)	248, 277, 354, 658
HpyF3I	CTNAG	6 cut(s)	15, 46, 276, 344, 648, 802
HpySE526I	ACGT	2 cut(s)	58, 779
Hsp92I	GRCGYC	1 cut(s)	98
HspAI	GCGC	2 cut(s)	98, 348
KasI	GGCGCC	1 cut(s)	97
KroI	GCCGGC	1 cut(s)	271
KroNI	GCCGGC	1 cut(s)	273
Ksp22I	TGATCA	1 cut(s)	892
Kzo9I	GATC	5 cut(s)	180, 288, 334, 846, 892
LmnI	GCTCC	4 cut(s)	226, 248, 424, 962
Lsp1109I	GCAGC	2 cut(s)	254, 966
MaeI	CTAG	1 cut(s)	710
MaeII	ACGT	2 cut(s)	58, 779
MaeIII	GTNAC	2 cut(s)	49, 59
MalI	GATC	5 cut(s)	182, 290, 336, 848, 894
MboI	GATC	5 cut(s)	180, 288, 334, 846, 892
MboII	GAAGA	4 cut(s)	313, 503, 734, 757
MfeI	CAATTG	1 cut(s)	392
MflI	RGATCY	2 cut(s)	180, 288
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	3 cut(s)	26, 128, 392
MluI	ACGCGT	1 cut(s)	318
Mly113I	GGCGCC	1 cut(s)	98
MlyI	GAGTC	7 cut(s)	34, 108, 212, 406, 545, 698, 961
MmeI	TCCRAC	4 cut(s)	91, 165, 190, 446
MroNI	GCCGGC	1 cut(s)	271
MseI	TTAA	3 cut(s)	86, 444, 837
MspA1I	CMGCKG	1 cut(s)	245
MspR9I	CCNGG	6 cut(s)	146, 178, 212, 364, 365, 592
MunI	CAATTG	1 cut(s)	392
MvnI	CGCG	2 cut(s)	173, 320
MwoI	GCNNNNNNNGC	4 cut(s)	248, 277, 354, 658
NaeI	GCCGGC	1 cut(s)	273
NarI	GGCGCC	1 cut(s)	98
NciI	CCSGG	6 cut(s)	146, 178, 212, 364, 365, 592
NdeII	GATC	5 cut(s)	180, 288, 334, 846, 892
NgoMIV	GCCGGC	1 cut(s)	271
NlaIV	GGNNCC	6 cut(s)	99, 182, 210, 228, 250, 420
NmeAIII	GCCGAG	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	59
PceI	AGGCCT	1 cut(s)	431
PcsI	WCGNNNNNNNCGW	1 cut(s)	227
PdiI	GCCGGC	1 cut(s)	273
PfeI	GAWTC	2 cut(s)	457, 866
PkrI	GCNGC	2 cut(s)	244, 956
PleI	GAGTC	7 cut(s)	34, 108, 211, 406, 545, 698, 961
PluTI	GGCGCC	1 cut(s)	101
PpsI	GAGTC	7 cut(s)	34, 108, 211, 406, 545, 698, 961
PspN4I	GGNNCC	6 cut(s)	99, 182, 210, 228, 250, 420
PspPI	GGNCC	4 cut(s)	208, 366, 400, 593
PsuI	RGATCY	2 cut(s)	180, 288
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	2 cut(s)	467, 939
RsaNI	GTAC	2 cut(s)	466, 938
SaqAI	TTAA	3 cut(s)	86, 444, 837
SatI	GCNGC	2 cut(s)	243, 955
Sau3AI	GATC	5 cut(s)	180, 288, 334, 846, 892
Sau96I	GGNCC	4 cut(s)	208, 366, 400, 593
SchI	GAGTC	7 cut(s)	34, 108, 212, 406, 545, 698, 961
ScrFI	CCNGG	6 cut(s)	146, 178, 212, 364, 365, 592
SduI	GDGCHC	1 cut(s)	345
SfoI	GGCGCC	1 cut(s)	99
SinI	GGWCC	1 cut(s)	400
SmaI	CCCGGG	1 cut(s)	365
SmlI	CTYRAG	2 cut(s)	662, 850
SmoI	CTYRAG	2 cut(s)	662, 850
Sse9I	AATT	3 cut(s)	26, 128, 392
SseBI	AGGCCT	1 cut(s)	431
SsiI	CCGC	3 cut(s)	67, 171, 263
SspDI	GGCGCC	1 cut(s)	97
SspMI	CTAG	1 cut(s)	710
StuI	AGGCCT	1 cut(s)	431
StyD4I	CCNGG	6 cut(s)	144, 176, 210, 362, 363, 590
TaaI	ACNGT	1 cut(s)	568
TaiI	ACGT	2 cut(s)	61, 782
TaqI	TCGA	4 cut(s)	293, 549, 845, 911
TaqII	GACCGA	1 cut(s)	440
TasI	AATT	3 cut(s)	26, 128, 392
TatI	WGTACW	1 cut(s)	937
TfiI	GAWTC	2 cut(s)	457, 866
Tru1I	TTAA	3 cut(s)	86, 444, 837
Tru9I	TTAA	3 cut(s)	86, 444, 837
TscAI	CASTG	3 cut(s)	264, 799, 934
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	2 cut(s)	242, 954
Tsp45I	GTSAC	1 cut(s)	59
TspGWI	ACGGA	2 cut(s)	97, 480
TspMI	CCCGGG	1 cut(s)	363
TspRI	CASTG	3 cut(s)	264, 799, 934
VpaK11BI	GGWCC	1 cut(s)	400
XmaI	CCCGGG	1 cut(s)	363
XspI	CTAG	1 cut(s)	710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.