Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012313

Physical Location & Seq

Genomic Coordinates Reverse (-)

40737712 .. 40740365

Gene Structure 2654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1327900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

ATGGCCTTCGTCTCGCAGCTAACCCTAAACCCTCTGTTGCTAAACCCGCCGCGCCACCGTCTCACCTCCAAGCCTTGCCTCCTCCTTTCGCGAAACTCCGTGGGGATCACCGCTGCCAAATCCACTAACAAATTCAATTTGATCGTCGGGGCCCGACCATCGACCCGGATCCGATCGGCGAACGATGACGAGTGGGGCAACGAGAGGGAGGTCGAGTCCGGCGGGGATGTAGCTGTGGCCGTGGAGGAGAAGCCGGCTGAGCCGGAGCCAGCGGAGATTAGTCAGCTGAAGAAGGCTTTGGTGGACTCGTTTTACGGGACTAATCGTGGGCTGAGCGCCACCAGCGAGACCCGGGCCGAGATTGTGGAGCTTATTACCCAGTTGGAGGCCAAAAACCCGACTCCGGCTCCGACTGAGGCCTTGCCTCTCCTCAATGGCAAATGGATTCTAGCGTACACTTCATTTGCGGGTCTGTTTCCATTGTTGTCAAGAGGGACGCTTCCATTGGTGAAGGTTGAAGAGATATCTCAGACAATTGACTCTGAGAATTTTACCGTACAAAACTCTGTCCAGTTTGCTGGACCGCTGGCTACCACTTCCATCAGCACGAACGCGACATTTGAAGTCCGAAGCCCCAAGCGCGTCCAGATTAAGTTTGAAGAAGGCGTAATTGGCACCCCACAGCTAACAGACTCGCTGGTGATACCGGAAAATGTTGACTTTCTAGGACAAAAAATCGAACTCGCACCCTTCAAGGGTTTGCTCAATTCTGTTCAAGACACTGCTTCATCTGTTGTAAAGACCATCTCCAGTCAACCCCCTTTTAAGTTCTCCATCCCAAGTAGCAATGCCCAGTCGTGGTTGCTAACCACGTACCTCGACGGAGAGCTCCGGATTAGCAGGGGAGACAACGGCAGTGTGTTCGTGCTAATCAAGGCAGGCAGCCCCCTCTTGACTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009414 GO:0009415 GO:0009416 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009628 GO:0009642 GO:0009644 GO:0009719 GO:0009725 GO:0009737 GO:0009892 GO:0010033 GO:0010035 GO:0010109 GO:0010205 GO:0010287 GO:0010319 GO:0016020 GO:0019222 GO:0031323 GO:0031324 GO:0031967 GO:0031975 GO:0031976 GO:0031977 GO:0031984 GO:0033993 GO:0034357 GO:0042221 GO:0042548 GO:0042651 GO:0043155 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043467 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0055035 GO:0065007 GO:0097305 GO:1901700 GO:1905156

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAP_fibrillin

Protein Analysis

321

Amino Acids

34.63

Weight (kDa)

5.72

Isoelectric Point (pI)

39.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAP_fibrillin	PF04755	95 - 310	8.8e-81	PAP_fibrillin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04020 AT4G22240
fragaria_vesca	FvH4_3g01310
malus_domestica	MD10G1327900.v1.1
prunus_persica	Prupe.4G014000_v2.0.a1
pyrus_communis	pycom10g27770
rosa_chinensis	RchiOBHm_Chr5g0001851
rosa_laevigata	RLG00000030965 RLG00000030977
rosa_multiflora	Rmu_co8379131.1_g000001 Rmu_sc0000378.1_g000002 Rmu_ssc0000237.1_g000008
rosa_roxburghii	Rroxscaffold_1G00071280 Rroxscaffold_1G00074500
rosa_rugosa	Rorug04G0393600
rosa_samantha	Rh5BG018200 Rh5CG015900 Rh5DG016300
rosa_wichuraiana	Rw5G001430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	674
AccII	CGCG	4 cut(s)	52, 91, 614, 642
AccIII	TCCGGA	1 cut(s)	891
AciI	CCGC	7 cut(s)	47, 50, 111, 222, 272, 467, 584
AclWI	GGATC	3 cut(s)	113, 163, 176
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	131, 547
AcuI	CTGAAG	1 cut(s)	308
AfaI	GTAC	3 cut(s)	455, 558, 875
AfiI	CCNNNNNNNGG	4 cut(s)	385, 403, 755, 858
AgsI	TTSAA	6 cut(s)	136, 518, 623, 659, 754, 776
AjuI	GAANNNNNNNTTGG	4 cut(s)	281, 313, 654, 686
AluBI	AGCT	6 cut(s)	19, 233, 286, 370, 685, 889
AluI	AGCT	6 cut(s)	19, 233, 286, 370, 685, 889
Alw21I	GWGCWC	1 cut(s)	891
Alw26I	GTCTC	4 cut(s)	16, 65, 341, 900
AlwI	GGATC	3 cut(s)	113, 163, 176
Ama87I	CYCGRG	1 cut(s)	351
Aor13HI	TCCGGA	1 cut(s)	891
AoxI	GGCC	6 cut(s)	3, 150, 237, 354, 387, 417
ApaI	GGGCCC	1 cut(s)	154
ApeKI	GCWGC	3 cut(s)	16, 113, 942
ApoI	RAATTY	2 cut(s)	131, 547
AspLEI	GCGC	3 cut(s)	54, 338, 642
AspS9I	GGNCC	4 cut(s)	150, 151, 354, 581
AsuC2I	CCSGG	3 cut(s)	166, 352, 353
AsuHPI	GGTGA	4 cut(s)	55, 100, 520, 712
AvaI	CYCGRG	1 cut(s)	351
AvaII	GGWCC	1 cut(s)	581
BaeGI	GKGCMC	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	168
BanI	GGYRCC	1 cut(s)	674
BanII	GRGCYC	2 cut(s)	154, 891
Bbv12I	GWGCWC	1 cut(s)	891
BbvI	GCAGC	3 cut(s)	28, 100, 954
BccI	CCATC	4 cut(s)	166, 608, 812, 842
BceAI	ACGGC	2 cut(s)	224, 928
BcgI	CGANNNNNNTGC	2 cut(s)	904, 938
BcnI	CCSGG	3 cut(s)	166, 352, 353
BcoDI	GTCTC	4 cut(s)	16, 65, 341, 900
BfaI	CTAG	2 cut(s)	449, 725
BfoI	RGCGCY	1 cut(s)	339
BisI	GCNGC	4 cut(s)	17, 50, 114, 943
BlpI	GCTNAGC	2 cut(s)	258, 332
BlsI	GCNGC	4 cut(s)	18, 51, 115, 944
Bme1390I	CCNGG	3 cut(s)	166, 352, 353
Bme18I	GGWCC	1 cut(s)	581
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	4 cut(s)	150, 151, 354, 581
BmiI	GGNNCC	6 cut(s)	151, 152, 170, 267, 408, 676
BmrFI	CCNGG	3 cut(s)	166, 352, 353
BmrI	ACTGGG	2 cut(s)	373, 847
BmuI	ACTGGG	2 cut(s)	373, 847
BpmI	CTGGAG	1 cut(s)	793
Bpu1102I	GCTNAGC	2 cut(s)	258, 332
BpuMI	CCSGG	3 cut(s)	166, 352, 353
BsaAI	YACGTR	1 cut(s)	873
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	3 cut(s)	99, 240, 351
BsaWI	WCCGGW	2 cut(s)	706, 891
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 391, 421
Bsc4I	CCNNNNNNNGG	4 cut(s)	385, 403, 755, 858
Bse118I	RCCGGY	1 cut(s)	253
Bse1I	ACTGG	4 cut(s)	379, 571, 810, 853
Bse3DI	GCAATG	1 cut(s)	853
BseAI	TCCGGA	1 cut(s)	891
BseDI	CCNNGG	3 cut(s)	99, 240, 351
BseGI	GGATG	2 cut(s)	232, 834
BseLI	CCNNNNNNNGG	4 cut(s)	385, 403, 755, 858
BseMI	GCAATG	1 cut(s)	853
BseMII	CTCAG	5 cut(s)	249, 323, 405, 534, 542
BseNI	ACTGG	4 cut(s)	379, 571, 810, 853
BseRI	GAGGAG	3 cut(s)	71, 260, 419
BseSI	GKGCMC	1 cut(s)	154
BseXI	GCAGC	3 cut(s)	28, 100, 954
Bsh1236I	CGCG	4 cut(s)	52, 91, 614, 642
Bsh1285I	CGRYCG	1 cut(s)	176
BshFI	GGCC	6 cut(s)	5, 152, 239, 356, 389, 419
BshNI	GGYRCC	1 cut(s)	674
BsiEI	CGRYCG	1 cut(s)	176
BsiHKAI	GWGCWC	1 cut(s)	891
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	8 cut(s)	166, 219, 254, 263, 352, 404, 707, 892
BslFI	GGGAC	2 cut(s)	331, 508
BslI	CCNNNNNNNGG	4 cut(s)	385, 403, 755, 858
BsmAI	GTCTC	4 cut(s)	16, 65, 341, 900
BsmBI	CGTCTC	2 cut(s)	16, 65
BsmFI	GGGAC	2 cut(s)	331, 508
BsnI	GGCC	6 cut(s)	5, 152, 239, 356, 389, 419
Bso31I	GGTCTC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	351
Bsp120I	GGGCCC	1 cut(s)	150
Bsp1286I	GDGCHC	2 cut(s)	154, 891
Bsp13I	TCCGGA	1 cut(s)	891
Bsp143I	GATC	4 cut(s)	105, 141, 168, 173
Bsp1720I	GCTNAGC	2 cut(s)	258, 332
Bsp68I	TCGCGA	1 cut(s)	91
BspACI	CCGC	7 cut(s)	47, 50, 111, 222, 272, 467, 584
BspANI	GGCC	6 cut(s)	5, 152, 239, 356, 389, 419
BspCNI	CTCAG	5 cut(s)	250, 324, 406, 535, 541
BspEI	TCCGGA	1 cut(s)	891
BspFNI	CGCG	4 cut(s)	52, 91, 614, 642
BspLI	GGNNCC	6 cut(s)	151, 152, 170, 267, 408, 676
BspPI	GGATC	3 cut(s)	113, 163, 176
BspT107I	GGYRCC	1 cut(s)	674
BspTNI	GGTCTC	1 cut(s)	341
BsrDI	GCAATG	1 cut(s)	853
BsrFI	RCCGGY	1 cut(s)	253
BsrI	ACTGG	4 cut(s)	379, 571, 810, 853
BssAI	RCCGGY	1 cut(s)	253
BssECI	CCNNGG	3 cut(s)	99, 240, 351
BssMI	GATC	4 cut(s)	105, 141, 168, 173
Bst4CI	ACNGT	2 cut(s)	59, 556
Bst6I	CTCTTC	1 cut(s)	513
BstBAI	YACGTR	1 cut(s)	873
BstC8I	GCNNGC	4 cut(s)	255, 270, 588, 940
BstDEI	CTNAG	5 cut(s)	258, 332, 414, 528, 543
BstDSI	CCRYGG	2 cut(s)	99, 240
BstF5I	GGATG	2 cut(s)	232, 834
BstFNI	CGCG	4 cut(s)	52, 91, 614, 642
BstH2I	RGCGCY	1 cut(s)	339
BstHHI	GCGC	3 cut(s)	54, 338, 642
BstKTI	GATC	4 cut(s)	108, 144, 171, 176
BstMAI	GTCTC	4 cut(s)	16, 65, 341, 900
BstMBI	GATC	4 cut(s)	105, 141, 168, 173
BstMCI	CGRYCG	1 cut(s)	176
BstMWI	GCNNNNNNNGC	5 cut(s)	46, 259, 342, 639, 672
BstSCI	CCNGG	3 cut(s)	164, 350, 351
BstSLI	GKGCMC	1 cut(s)	154
BstUI	CGCG	4 cut(s)	52, 91, 614, 642
BstV1I	GCAGC	3 cut(s)	28, 100, 954
BstX2I	RGATCY	1 cut(s)	168
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	168
BsuRI	GGCC	6 cut(s)	5, 152, 239, 356, 389, 419
BtgI	CCRYGG	2 cut(s)	99, 240
BtsCI	GGATG	2 cut(s)	232, 834
BtsI	GCAGTG	2 cut(s)	780, 922
BtsIMutI	CAGTG	2 cut(s)	780, 922
BtuMI	TCGCGA	1 cut(s)	91
Cac8I	GCNNGC	4 cut(s)	255, 270, 588, 940
CfoI	GCGC	3 cut(s)	54, 338, 642
Cfr10I	RCCGGY	1 cut(s)	253
Cfr13I	GGNCC	4 cut(s)	150, 151, 354, 581
Cfr9I	CCCGGG	1 cut(s)	351
CseI	GACGC	2 cut(s)	505, 631
Csp6I	GTAC	3 cut(s)	454, 557, 874
CviQI	GTAC	3 cut(s)	454, 557, 874
DdeI	CTNAG	5 cut(s)	258, 332, 414, 528, 543
DpnI	GATC	4 cut(s)	107, 143, 170, 175
DpnII	GATC	4 cut(s)	105, 141, 168, 173
EaeI	YGGCCR	1 cut(s)	237
Eam1104I	CTCTTC	1 cut(s)	513
EarI	CTCTTC	1 cut(s)	513
Ecl136II	GAGCTC	1 cut(s)	889
Eco147I	AGGCCT	1 cut(s)	419
Eco24I	GRGCYC	2 cut(s)	154, 891
Eco31I	GGTCTC	1 cut(s)	341
Eco32I	GATATC	1 cut(s)	525
Eco47I	GGWCC	1 cut(s)	581
Eco53kI	GAGCTC	1 cut(s)	889
Eco57I	CTGAAG	1 cut(s)	308
Eco88I	CYCGRG	1 cut(s)	351
EcoICRI	GAGCTC	1 cut(s)	889
EcoO109I	RGGNCCY	1 cut(s)	150
EcoRV	GATATC	1 cut(s)	525
EcoT38I	GRGCYC	2 cut(s)	154, 891
Esp3I	CGTCTC	2 cut(s)	16, 65
FaqI	GGGAC	2 cut(s)	331, 508
FauI	CCCGC	3 cut(s)	54, 215, 460
Fnu4HI	GCNGC	4 cut(s)	17, 50, 114, 943
FokI	GGATG	2 cut(s)	239, 821
FriOI	GRGCYC	2 cut(s)	154, 891
Fsp4HI	GCNGC	4 cut(s)	17, 50, 114, 943
FspBI	CTAG	2 cut(s)	449, 725
GlaI	GCGC	3 cut(s)	53, 337, 641
GluI	GCNGC	4 cut(s)	17, 50, 114, 943
GsuI	CTGGAG	1 cut(s)	793
HaeII	RGCGCY	1 cut(s)	339
HaeIII	GGCC	6 cut(s)	5, 152, 239, 356, 389, 419
HapII	CCGG	8 cut(s)	166, 219, 254, 263, 352, 404, 707, 892
HgaI	GACGC	2 cut(s)	505, 631
HhaI	GCGC	3 cut(s)	54, 338, 642
Hin6I	GCGC	3 cut(s)	52, 336, 640
HinP1I	GCGC	3 cut(s)	52, 336, 640
HincII	GTYRAC	2 cut(s)	718, 815
HindII	GTYRAC	2 cut(s)	718, 815
HinfI	GANTC	7 cut(s)	215, 305, 400, 445, 539, 692, 955
HpaII	CCGG	8 cut(s)	166, 219, 254, 263, 352, 404, 707, 892
HphI	GGTGA	4 cut(s)	55, 100, 520, 712
Hpy166II	GTNNAC	4 cut(s)	304, 456, 718, 815
Hpy188I	TCNGA	5 cut(s)	173, 411, 531, 544, 629
Hpy188III	TCNNGA	6 cut(s)	90, 489, 646, 776, 892, 952
Hpy8I	GTNNAC	4 cut(s)	304, 456, 718, 815
Hpy99I	CGWCG	2 cut(s)	149, 884
HpyAV	CCTTC	5 cut(s)	16, 286, 505, 656, 760
HpyCH4III	ACNGT	2 cut(s)	59, 556
HpyCH4IV	ACGT	1 cut(s)	872
HpyF10VI	GCNNNNNNNGC	5 cut(s)	46, 259, 342, 639, 672
HpyF3I	CTNAG	5 cut(s)	258, 332, 414, 528, 543
HpySE526I	ACGT	1 cut(s)	872
HspAI	GCGC	3 cut(s)	52, 336, 640
Kpn2I	TCCGGA	1 cut(s)	891
KroI	GCCGGC	1 cut(s)	253
KroNI	GCCGGC	1 cut(s)	255
Kzo9I	GATC	4 cut(s)	105, 141, 168, 173
LmnI	GCTCC	4 cut(s)	265, 367, 412, 894
Lsp1109I	GCAGC	3 cut(s)	28, 100, 954
MaeI	CTAG	2 cut(s)	449, 725
MaeII	ACGT	1 cut(s)	872
MalI	GATC	4 cut(s)	107, 143, 170, 175
MboI	GATC	4 cut(s)	105, 141, 168, 173
MboII	GAAGA	3 cut(s)	301, 530, 671
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	154, 891
MluCI	AATT	6 cut(s)	131, 136, 534, 547, 669, 766
MlyI	GAGTC	6 cut(s)	224, 299, 394, 533, 686, 949
MmeI	TCCRAC	2 cut(s)	363, 434
MroI	TCCGGA	1 cut(s)	891
MroNI	GCCGGC	1 cut(s)	253
MseI	TTAA	2 cut(s)	651, 825
MspA1I	CMGCKG	4 cut(s)	113, 272, 286, 586
MspI	CCGG	8 cut(s)	166, 219, 254, 263, 352, 404, 707, 892
MspR9I	CCNGG	3 cut(s)	166, 352, 353
MunI	CAATTG	1 cut(s)	534
MvnI	CGCG	4 cut(s)	52, 91, 614, 642
MwoI	GCNNNNNNNGC	5 cut(s)	46, 259, 342, 639, 672
NaeI	GCCGGC	1 cut(s)	255
NciI	CCSGG	3 cut(s)	166, 352, 353
NdeII	GATC	4 cut(s)	105, 141, 168, 173
NgoMIV	GCCGGC	1 cut(s)	253
NlaIV	GGNNCC	6 cut(s)	151, 152, 170, 267, 408, 676
NmeAIII	GCCGAG	1 cut(s)	382
NruI	TCGCGA	1 cut(s)	91
PceI	AGGCCT	1 cut(s)	419
PdiI	GCCGGC	1 cut(s)	255
PfeI	GAWTC	1 cut(s)	445
PkrI	GCNGC	4 cut(s)	18, 51, 115, 944
Ple19I	CGATCG	1 cut(s)	176
PleI	GAGTC	6 cut(s)	223, 299, 394, 533, 686, 949
PpsI	GAGTC	6 cut(s)	223, 299, 394, 533, 686, 949
Ppu21I	YACGTR	1 cut(s)	873
Psp124BI	GAGCTC	1 cut(s)	891
PspN4I	GGNNCC	6 cut(s)	151, 152, 170, 267, 408, 676
PspOMI	GGGCCC	1 cut(s)	150
PspPI	GGNCC	4 cut(s)	150, 151, 354, 581
PsuI	RGATCY	1 cut(s)	168
PvuI	CGATCG	1 cut(s)	176
PvuII	CAGCTG	1 cut(s)	286
RruI	TCGCGA	1 cut(s)	91
RsaI	GTAC	3 cut(s)	455, 558, 875
RsaNI	GTAC	3 cut(s)	454, 557, 874
SacI	GAGCTC	1 cut(s)	891
SaqAI	TTAA	2 cut(s)	651, 825
SatI	GCNGC	4 cut(s)	17, 50, 114, 943
Sau3AI	GATC	4 cut(s)	105, 141, 168, 173
Sau96I	GGNCC	4 cut(s)	150, 151, 354, 581
SchI	GAGTC	6 cut(s)	224, 299, 394, 533, 686, 949
ScrFI	CCNGG	3 cut(s)	166, 352, 353
SduI	GDGCHC	2 cut(s)	154, 891
SinI	GGWCC	1 cut(s)	581
SmaI	CCCGGG	1 cut(s)	353
Sse9I	AATT	6 cut(s)	131, 136, 534, 547, 669, 766
SseBI	AGGCCT	1 cut(s)	419
SsiI	CCGC	7 cut(s)	47, 50, 111, 222, 272, 467, 584
SspMI	CTAG	2 cut(s)	449, 725
SstI	GAGCTC	1 cut(s)	891
StuI	AGGCCT	1 cut(s)	419
StyD4I	CCNGG	3 cut(s)	164, 350, 351
TaaI	ACNGT	2 cut(s)	59, 556
TaiI	ACGT	1 cut(s)	875
TaqI	TCGA	4 cut(s)	161, 213, 738, 879
TasI	AATT	6 cut(s)	131, 136, 534, 547, 669, 766
TauI	GCSGC	1 cut(s)	52
TfiI	GAWTC	1 cut(s)	445
Tru1I	TTAA	2 cut(s)	651, 825
Tru9I	TTAA	2 cut(s)	651, 825
TscAI	CASTG	2 cut(s)	787, 922
TseI	GCWGC	3 cut(s)	16, 113, 942
TspDTI	ATGAA	2 cut(s)	450, 777
TspGWI	ACGGA	2 cut(s)	88, 897
TspMI	CCCGGG	1 cut(s)	351
TspRI	CASTG	2 cut(s)	787, 922
VpaK11BI	GGWCC	1 cut(s)	581
XapI	RAATTY	2 cut(s)	131, 547
XmaI	CCCGGG	1 cut(s)	351
XspI	CTAG	2 cut(s)	449, 725

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.