AT4G04190

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0004781
Physical Location & Seq
Forward (+)
2024445 .. 2026517
2073 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G04190.3

Sequence Viewer

Length: 555 bp
ATGGATGTTGATTCACAACCAATGATGGAGGAGACTATACTGGTCGGTGATGACCTAATGACGGGTCCTCCATCTCCTGTTATCCCTCCTGAAATTGCTTCACATGTGCTTGAAGGTGTTGATTTGTGCGATGGGATTTTGAGGAATCTATTCCTGTGTTTGCAAATCAATGATATTGAACCATTTTGCCAAGATGAGCTTGCATTGTATCGACAATGTGCTGAAAAGAGGGACAAAATATTGAGAGTTAGACTTCAAGAGAGCGAACACAAGTTAGGATTGTCTATGCCCATTGAACTCGCTAAGGAAAGGATTACGCAGCTTGAAGCTGAAGCCACATCTTTTGAGAGGCACTTGATTCTAGCAAGTGGAGCTGAAGGAATAGAAGGATTTCGCCGGAGATGGAGTTTACACGGTCGGATGACGGATACCAAAAAAAGACTGGAGTCACTGAAGCAGGGAATGGAGAACAGGAACAAGGTTGAACATGAACATAACCAACACCATGATCAGTCCCCAAAACCTTCTGCTCCAAAAAGATGGTTCTTTTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

184

Amino Acids

21.25

Weight (kDa)

5.63

Isoelectric Point (pI)

72.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 4 - 134 1.3e-59 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 3 cut(s) 351, 396, 473
AfiI CCNNNNNNNGG 1 cut(s) 61
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 6 cut(s) 113, 179, 257, 296, 326, 485
AluBI AGCT 4 cut(s) 199, 322, 329, 374
AluI AGCT 4 cut(s) 199, 322, 329, 374
Alw26I GTCTC 1 cut(s) 26
ApeKI GCWGC 1 cut(s) 319
Asp700I GAANNNNTTC 2 cut(s) 149, 390
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 1 cut(s) 65
BbvI GCAGC 1 cut(s) 331
BccI CCATC 5 cut(s) 19, 79, 125, 396, 534
BciVI GTATCC 1 cut(s) 421
BclI TGATCA 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 362
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 1 cut(s) 320
BlsI GCNGC 1 cut(s) 321
Bme18I GGWCC 1 cut(s) 65
BmgT120I GGNCC 1 cut(s) 65
BmiI GGNNCC 1 cut(s) 66
BoxI GACNNNNGTC 1 cut(s) 445
BpmI CTGGAG 1 cut(s) 464
Bpu10I CCTNAGC 1 cut(s) 303
BsaXI ACNNNNNCTCC 4 cut(s) 52, 82, 391, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 61
Bse1I ACTGG 2 cut(s) 45, 447
BseGI GGATG 2 cut(s) 10, 426
BseLI CCNNNNNNNGG 1 cut(s) 61
BseNI ACTGG 2 cut(s) 45, 447
BseRI GAGGAG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 331
Bsh1285I CGRYCG 1 cut(s) 418
BsiEI CGRYCG 1 cut(s) 418
BsiSI CCGG 1 cut(s) 397
BslFI GGGAC 2 cut(s) 245, 499
BslI CCNNNNNNNGG 1 cut(s) 61
BsmAI GTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 245, 499
Bsp143I GATC 1 cut(s) 508
BspLI GGNNCC 1 cut(s) 66
BsrI ACTGG 2 cut(s) 45, 447
BssMI GATC 1 cut(s) 508
Bst4CI ACNGT 1 cut(s) 416
BstC8I GCNNGC 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 303
BstF5I GGATG 2 cut(s) 10, 426
BstKTI GATC 1 cut(s) 511
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 1 cut(s) 508
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 1 cut(s) 371
BstNSI RCATGY 1 cut(s) 107
BstPAI GACNNNNGTC 1 cut(s) 445
BstV1I GCAGC 1 cut(s) 331
BstXI CCANNNNNNTGG 1 cut(s) 540
BsuI GTATCC 1 cut(s) 421
BtgZI GCGATG 1 cut(s) 144
BtsCI GGATG 2 cut(s) 10, 426
BtsIMutI CAGTG 1 cut(s) 449
Cac8I GCNNGC 1 cut(s) 201
Cfr13I GGNCC 1 cut(s) 65
CspCI CAANNNNNGTGG 2 cut(s) 325, 360
CviAII CATG 3 cut(s) 104, 488, 506
CviJI RGCY 5 cut(s) 199, 322, 329, 335, 374
CviKI_1 RGCY 5 cut(s) 199, 322, 329, 335, 374
DdeI CTNAG 1 cut(s) 303
DpnI GATC 1 cut(s) 510
DpnII GATC 1 cut(s) 508
Eco47I GGWCC 1 cut(s) 65
Eco57I CTGAAG 3 cut(s) 351, 396, 473
EcoO109I RGGNCCY 1 cut(s) 65
FaeI CATG 3 cut(s) 107, 491, 509
FaiI YATR 6 cut(s) 38, 105, 287, 489, 495, 507
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FaqI GGGAC 2 cut(s) 245, 499
FatI CATG 3 cut(s) 103, 487, 505
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 1 cut(s) 320
FokI GGATG 2 cut(s) 17, 433
Fsp4HI GCNGC 1 cut(s) 320
FspBI CTAG 1 cut(s) 362
GluI GCNGC 1 cut(s) 320
GsuI CTGGAG 1 cut(s) 464
HapII CCGG 1 cut(s) 397
Hin1II CATG 3 cut(s) 107, 491, 509
HinfI GANTC 4 cut(s) 11, 145, 358, 446
HpaII CCGG 1 cut(s) 397
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 1 cut(s) 420
Hpy188III TCNNGA 2 cut(s) 89, 257
Hpy8I GTNNAC 1 cut(s) 410
HpyAV CCTTC 4 cut(s) 107, 371, 380, 534
HpyCH4III ACNGT 1 cut(s) 416
HpyCH4V TGCA 2 cut(s) 163, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 371
HpyF3I CTNAG 1 cut(s) 303
Hsp92II CATG 3 cut(s) 107, 491, 509
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 1 cut(s) 508
LmnI GCTCC 2 cut(s) 371, 535
LpnPI CCDG 8 cut(s) 26, 90, 102, 167, 410, 428, 443, 457
Lsp1109I GCAGC 1 cut(s) 331
MaeI CTAG 1 cut(s) 362
MaeIII GTNAC 1 cut(s) 447
MalI GATC 1 cut(s) 510
MboI GATC 1 cut(s) 508
MluCI AATT 1 cut(s) 93
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 398
MnlI CCTC 6 cut(s) 22, 78, 96, 135, 222, 342
MroXI GAANNNNTTC 2 cut(s) 149, 390
MspI CCGG 1 cut(s) 397
MwoI GCNNNNNNNGC 1 cut(s) 371
NdeII GATC 1 cut(s) 508
NlaIII CATG 3 cut(s) 107, 491, 509
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 447
NspI RCATGY 1 cut(s) 107
PciI ACATGT 1 cut(s) 103
PdmI GAANNNNTTC 2 cut(s) 149, 390
PfeI GAWTC 3 cut(s) 11, 145, 358
PkrI GCNGC 1 cut(s) 321
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PpuMI RGGWCCY 1 cut(s) 65
PscI ACATGT 1 cut(s) 103
PshAI GACNNNNGTC 1 cut(s) 445
Psp5II RGGWCCY 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 66
PspPI GGNCC 1 cut(s) 65
PspPPI RGGWCCY 1 cut(s) 65
SatI GCNGC 1 cut(s) 320
Sau3AI GATC 1 cut(s) 508
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 455
SetI ASST 8 cut(s) 57, 118, 201, 324, 331, 376, 483, 526
SinI GGWCC 1 cut(s) 65
Sse9I AATT 1 cut(s) 93
SspI AATATT 1 cut(s) 240
SspMI CTAG 1 cut(s) 362
TaaI ACNGT 1 cut(s) 416
TaqI TCGA 1 cut(s) 211
TasI AATT 1 cut(s) 93
TfiI GAWTC 3 cut(s) 11, 145, 358
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 1 cut(s) 447
TseI GCWGC 1 cut(s) 319
Tsp45I GTSAC 1 cut(s) 447
TspDTI ATGAA 1 cut(s) 504
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 1 cut(s) 456
VpaK11BI GGWCC 1 cut(s) 65
XceI RCATGY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 2 cut(s) 149, 390
XspI CTAG 1 cut(s) 362
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.