Rorug05G0287600

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0004781
Physical Location & Seq
Reverse (-)
33016487 .. 33019426
2940 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0287600.1

Sequence Viewer

Length: 1359 bp
ATGGCCAAAGAATCGAACAATGTGATGCTTGGTGCAAGTTCAATCATGATTTGCCTTCTTACCATTGGTTTGCTTTATGCTGCATTGACCATAAACCCCTTTGAGACATGGAAGCACAAGGTATCCAATTTGGATGGTAAGAGCGTTGGAGGGGAAGAACCTCTGCGATTTCTCTTCAGAAGACTGGTTAGAGGAAAAGATCGAGTTCAGCTCGATACCACTGGGTTGTCTTGCCACTCTGACCTTCACTTTGAACTGTGTTTGACTAATAAACCAGTCATAATTGACAAGAATGCATCAACAGTTTATATACCTTCCAAAGAAGCCAAATCTGAATACAAGGTTAAGCCATATGCAAGAAAAGAGGATGAGACTGCAATGAAGATCGTCACACCAGTACGAATACTACATGGTAACATTACACCACCAGCCTGCGATTTTATTCACAGAGTTCCAGCAGTGATCTTCTCCTCAGGTGGCTTCACAGGAAACCTATTTCATGAGTTTAATGAGATCATCATCCCCTTGTTCCTCACCTGCCACCACTTTCGATCCCGCATTCAATTTGTTATAACTGACTTTAAGCCTTGGTGGGTGGAAAAGTACAGTCGAGTTCTATCCCATTTGTCCAGTCATGATGTTATAAATCCGGTTGAGAATGGTAGTGTTCACTGCTTTCCTGGAGCTGTCATGGGGCTGATATATCATGAAAACTTGGCTCTAAATTATACAGAAATTCCAGGAGGGTACTCTATGCTTGATTTCAAGCAATTCCTTAGAGAGTCATTTATGCTGAAAATGAAGCATGTCTCGGAGATGAAAAGGCAAAGGCCGATGCTAATGCATCTATCTCGTAGCGAAACAAGGAAGTTTCTGAATGAAGATAAAATAGTGGAAATGATGGAAGCATTAGGCTTTCAAGTCATTGTGGCAACGCCCAATCAGACATCAAATTTGGACACATTTTCCGGCTTGGTGAACTCATGCAGTGTCATTGTTGGAGCTCATGGTGCTGGCCTTACAAATGCAGTGTTCTTGCCAACCAAGGCAGTGATGGTGCAAGTGGTGCCTCTGGGGTTAGATTGGGCTTCGGCTGCCTATTATGGAGAAACGGTAGGTACTGGAATGGGGTTGGAATACTTGGAGTACAAAATTAAAGCAGAGGAAAGTTCCCTCTTTGATGTCTATGGTCCTGATCACCCAGTCATTACTGATCCCGAGTCTATATTCGCGAAGGGCTATGAGGCTGCCAGGGCTGTTTATGTTGATGGCCAGAATCTCAAGATTAACTTGGTCAGGTTCAGGAAAACCCTTGTTGAAGCCATGAAACTTCTAGGACACTCTACTTCCGAAAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00290 ko00650 ko00660 ko00770 ko01100 ko01110 ko01130 ko01210 ko01230 map00290 map00650 map00660 map00770 map01100 map01110 map01130 map01210 map01230
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

452

Amino Acids

50.69

Weight (kDa)

7.28

Isoelectric Point (pI)

29.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glyco_transf_61 PF04577 197 - 353 2.8e-12 Glycosyltransferase 61
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 572, 644
AarI CACCTGC 1 cut(s) 545
Acc36I ACCTGC 1 cut(s) 545
AccB1I GGYRCC 1 cut(s) 1066
AccII CGCG 1 cut(s) 1232
AciI CCGC 1 cut(s) 556
AclWI GGATC 2 cut(s) 546, 1208
AcoI YGGCCR 2 cut(s) 3, 1270
AcsI RAATTY 2 cut(s) 735, 952
AcuI CTGAAG 1 cut(s) 160
AfaI GTAC 5 cut(s) 399, 605, 749, 1120, 1148
AgsI TTSAA 6 cut(s) 42, 254, 563, 766, 920, 1319
AjnI CCWGG 3 cut(s) 679, 739, 1250
AluBI AGCT 3 cut(s) 211, 686, 1004
AluI AGCT 3 cut(s) 211, 686, 1004
Alw21I GWGCWC 1 cut(s) 1006
Alw26I GTCTC 3 cut(s) 98, 365, 814
AlwI GGATC 2 cut(s) 546, 1208
Ama87I CYCGRG 1 cut(s) 1217
AoxI GGCC 4 cut(s) 3, 830, 1015, 1270
ApeKI GCWGC 3 cut(s) 80, 1094, 1247
ApoI RAATTY 2 cut(s) 735, 952
ArsI GACNNNNNNTTYG 4 cut(s) 233, 265, 937, 969
AspS9I GGNCC 1 cut(s) 1190
AsuHPI GGTGA 3 cut(s) 526, 988, 1190
AvaI CYCGRG 1 cut(s) 1217
AvaII GGWCC 1 cut(s) 1190
AxyI CCTNAGG 1 cut(s) 472
BalI TGGCCA 2 cut(s) 5, 1272
BanI GGYRCC 1 cut(s) 1066
BanII GRGCYC 1 cut(s) 1006
BbsI GAAGAC 1 cut(s) 187
Bbv12I GWGCWC 1 cut(s) 1006
BbvI GCAGC 3 cut(s) 67, 1081, 1234
BccI CCATC 4 cut(s) 128, 895, 1048, 1262
BcgI CGANNNNNNTGC 4 cut(s) 823, 833, 857, 867
BciT130I CCWGG 3 cut(s) 681, 741, 1252
BciVI GTATCC 1 cut(s) 133
BclI TGATCA 1 cut(s) 1195
BcoDI GTCTC 3 cut(s) 98, 365, 814
BfaI CTAG 1 cut(s) 1334
BfuAI ACCTGC 1 cut(s) 545
BfuI GTATCC 1 cut(s) 133
BisI GCNGC 3 cut(s) 81, 1095, 1248
BlsI GCNGC 3 cut(s) 82, 1096, 1249
Bme1390I CCNGG 3 cut(s) 681, 741, 1252
Bme18I GGWCC 1 cut(s) 1190
BmeT110I CYCGRG 1 cut(s) 1217
BmgT120I GGNCC 1 cut(s) 1190
BmiI GGNNCC 1 cut(s) 1068
BmrFI CCNGG 3 cut(s) 681, 741, 1252
BmrI ACTGGG 2 cut(s) 231, 1196
BmsI GCATC 4 cut(s) 15, 305, 825, 853
BmuI ACTGGG 2 cut(s) 231, 1196
BpiI GAAGAC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 195, 227
BpmI CTGGAG 1 cut(s) 702
BpuEI CTTGAG 1 cut(s) 1265
BsaBI GATNNNNATC 1 cut(s) 518
BsaJI CCNNGG 3 cut(s) 587, 1044, 1251
BsaWI WCCGGW 1 cut(s) 649
BsaXI ACNNNNNCTCC 2 cut(s) 1098, 1128
Bse1I ACTGG 7 cut(s) 189, 226, 275, 395, 630, 1126, 1202
Bse21I CCTNAGG 1 cut(s) 472
Bse3DI GCAATG 1 cut(s) 384
Bse8I GATNNNNATC 1 cut(s) 518
BseBI CCWGG 3 cut(s) 681, 741, 1252
BseDI CCNNGG 3 cut(s) 587, 1044, 1251
BseGI GGATG 3 cut(s) 139, 373, 519
BseJI GATNNNNATC 1 cut(s) 518
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 1 cut(s) 486
BseNI ACTGG 7 cut(s) 189, 226, 275, 395, 630, 1126, 1202
BseRI GAGGAG 1 cut(s) 460
BseXI GCAGC 3 cut(s) 67, 1081, 1234
Bsh1236I CGCG 1 cut(s) 1232
BshFI GGCC 4 cut(s) 5, 832, 1017, 1272
BshNI GGYRCC 1 cut(s) 1066
BsiHKAI GWGCWC 1 cut(s) 1006
BsiHKCI CYCGRG 1 cut(s) 1217
BsiSI CCGG 2 cut(s) 650, 969
BsmAI GTCTC 3 cut(s) 98, 365, 814
BsmI GAATGC 2 cut(s) 298, 558
BsnI GGCC 4 cut(s) 5, 832, 1017, 1272
BsoBI CYCGRG 1 cut(s) 1217
Bsp1286I GDGCHC 1 cut(s) 1006
Bsp143I GATC 7 cut(s) 199, 384, 462, 513, 551, 1195, 1213
Bsp68I TCGCGA 1 cut(s) 1232
BspACI CCGC 1 cut(s) 556
BspANI GGCC 4 cut(s) 5, 832, 1017, 1272
BspCNI CTCAG 1 cut(s) 485
BspFNI CGCG 1 cut(s) 1232
BspHI TCATGA 4 cut(s) 45, 499, 634, 706
BspLI GGNNCC 1 cut(s) 1068
BspMI ACCTGC 1 cut(s) 545
BspPI GGATC 2 cut(s) 546, 1208
BspT107I GGYRCC 1 cut(s) 1066
BsrDI GCAATG 1 cut(s) 384
BsrI ACTGG 7 cut(s) 189, 226, 275, 395, 630, 1126, 1202
BssECI CCNNGG 3 cut(s) 587, 1044, 1251
BssMI GATC 7 cut(s) 199, 384, 462, 513, 551, 1195, 1213
BssT1I CCWWGG 2 cut(s) 587, 1044
Bst2UI CCWGG 3 cut(s) 681, 741, 1252
Bst4CI ACNGT 4 cut(s) 258, 304, 608, 1114
Bst6I CTCTTC 1 cut(s) 179
BstAPI GCANNNNNTGC 1 cut(s) 1066
BstC8I GCNNGC 2 cut(s) 433, 1015
BstDEI CTNAG 2 cut(s) 472, 776
BstF5I GGATG 3 cut(s) 139, 373, 519
BstFNI CGCG 1 cut(s) 1232
BstKTI GATC 7 cut(s) 202, 387, 465, 516, 554, 1198, 1216
BstMAI GTCTC 3 cut(s) 98, 365, 814
BstMBI GATC 7 cut(s) 199, 384, 462, 513, 551, 1195, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 1010, 1066, 1094, 1253
BstNI CCWGG 3 cut(s) 681, 741, 1252
BstNSI RCATGY 1 cut(s) 809
BstSCI CCNGG 3 cut(s) 679, 739, 1250
BstUI CGCG 1 cut(s) 1232
BstV1I GCAGC 3 cut(s) 67, 1081, 1234
BstV2I GAAGAC 1 cut(s) 187
Bsu36I CCTNAGG 1 cut(s) 472
BsuI GTATCC 1 cut(s) 133
BsuRI GGCC 4 cut(s) 5, 832, 1017, 1272
BtsCI GGATG 3 cut(s) 139, 373, 519
BtsI GCAGTG 5 cut(s) 465, 670, 994, 1035, 1056
BtsIMutI CAGTG 6 cut(s) 219, 465, 670, 994, 1035, 1056
BtuMI TCGCGA 1 cut(s) 1232
BveI ACCTGC 1 cut(s) 545
Cac8I GCNNGC 2 cut(s) 433, 1015
CciI TCATGA 4 cut(s) 45, 499, 634, 706
Cfr13I GGNCC 1 cut(s) 1190
Csp6I GTAC 5 cut(s) 398, 604, 748, 1119, 1147
CviQI GTAC 5 cut(s) 398, 604, 748, 1119, 1147
DdeI CTNAG 2 cut(s) 472, 776
DpnI GATC 7 cut(s) 201, 386, 464, 515, 553, 1197, 1215
DpnII GATC 7 cut(s) 199, 384, 462, 513, 551, 1195, 1213
EaeI YGGCCR 2 cut(s) 3, 1270
Eam1104I CTCTTC 1 cut(s) 179
EarI CTCTTC 1 cut(s) 179
Ecl136II GAGCTC 1 cut(s) 1004
Eco130I CCWWGG 2 cut(s) 587, 1044
Eco24I GRGCYC 1 cut(s) 1006
Eco47I GGWCC 1 cut(s) 1190
Eco53kI GAGCTC 1 cut(s) 1004
Eco57I CTGAAG 1 cut(s) 160
Eco81I CCTNAGG 1 cut(s) 472
Eco88I CYCGRG 1 cut(s) 1217
EcoICRI GAGCTC 1 cut(s) 1004
EcoRII CCWGG 3 cut(s) 679, 739, 1250
EcoT14I CCWWGG 2 cut(s) 587, 1044
EcoT22I ATGCAT 2 cut(s) 298, 846
EcoT38I GRGCYC 1 cut(s) 1006
ErhI CCWWGG 2 cut(s) 587, 1044
FalI AAGNNNNNCTT 2 cut(s) 1274, 1306
FauI CCCGC 1 cut(s) 563
FauNDI CATATG 1 cut(s) 352
FbaI TGATCA 1 cut(s) 1195
Fnu4HI GCNGC 3 cut(s) 81, 1095, 1248
FokI GGATG 3 cut(s) 146, 380, 506
FriOI GRGCYC 1 cut(s) 1006
Fsp4HI GCNGC 3 cut(s) 81, 1095, 1248
FspBI CTAG 1 cut(s) 1334
GluI GCNGC 3 cut(s) 81, 1095, 1248
GsuI CTGGAG 1 cut(s) 702
HaeIII GGCC 4 cut(s) 5, 832, 1017, 1272
HapII CCGG 2 cut(s) 650, 969
HinfI GANTC 4 cut(s) 11, 782, 1220, 1276
HpaII CCGG 2 cut(s) 650, 969
HphI GGTGA 3 cut(s) 526, 988, 1190
Hpy166II GTNNAC 2 cut(s) 670, 979
Hpy188I TCNGA 7 cut(s) 179, 241, 334, 814, 876, 945, 1351
Hpy188III TCNNGA 9 cut(s) 46, 500, 635, 707, 1193, 1217, 1231, 1282, 1303
Hpy8I GTNNAC 2 cut(s) 670, 979
HpyAV CCTTC 4 cut(s) 65, 254, 324, 1228
HpyCH4III ACNGT 4 cut(s) 258, 304, 608, 1114
HpyCH4V TGCA 9 cut(s) 35, 83, 296, 356, 377, 844, 987, 1028, 1060
HpyF10VI GCNNNNNNNGC 4 cut(s) 1010, 1066, 1094, 1253
HpyF3I CTNAG 2 cut(s) 472, 776
Ksp22I TGATCA 1 cut(s) 1195
Kzo9I GATC 7 cut(s) 199, 384, 462, 513, 551, 1195, 1213
LmnI GCTCC 2 cut(s) 683, 1001
Lsp1109I GCAGC 3 cut(s) 67, 1081, 1234
LweI GCATC 4 cut(s) 15, 305, 825, 853
MaeI CTAG 1 cut(s) 1334
MaeIII GTNAC 2 cut(s) 388, 413
MalI GATC 7 cut(s) 201, 386, 464, 515, 553, 1197, 1215
MboI GATC 7 cut(s) 199, 384, 462, 513, 551, 1195, 1213
MboII GAAGA 6 cut(s) 166, 167, 192, 394, 457, 893
MhlI GDGCHC 1 cut(s) 1006
MlsI TGGCCA 2 cut(s) 5, 1272
MluCI AATT 9 cut(s) 127, 282, 563, 724, 735, 770, 952, 1152, 1354
MluNI TGGCCA 2 cut(s) 5, 1272
MlyI GAGTC 2 cut(s) 791, 1229
MmeI TCCRAC 3 cut(s) 127, 979, 1113
Mox20I TGGCCA 2 cut(s) 5, 1272
Mph1103I ATGCAT 2 cut(s) 298, 846
MscI TGGCCA 2 cut(s) 5, 1272
MseI TTAA 5 cut(s) 345, 507, 582, 1155, 1287
Msp20I TGGCCA 2 cut(s) 5, 1272
MspI CCGG 2 cut(s) 650, 969
MspR9I CCNGG 3 cut(s) 681, 741, 1252
Mva1269I GAATGC 2 cut(s) 298, 558
MvaI CCWGG 3 cut(s) 681, 741, 1252
MvnI CGCG 1 cut(s) 1232
MwoI GCNNNNNNNGC 4 cut(s) 1010, 1066, 1094, 1253
NdeI CATATG 1 cut(s) 352
NdeII GATC 7 cut(s) 199, 384, 462, 513, 551, 1195, 1213
NlaIV GGNNCC 1 cut(s) 1068
NmuCI GTSAC 1 cut(s) 388
NruI TCGCGA 1 cut(s) 1232
NsiI ATGCAT 2 cut(s) 298, 846
NspI RCATGY 1 cut(s) 809
PagI TCATGA 4 cut(s) 45, 499, 634, 706
PaqCI CACCTGC 1 cut(s) 545
PctI GAATGC 2 cut(s) 298, 558
PfeI GAWTC 2 cut(s) 11, 1276
PfoI TCCNGGA 2 cut(s) 679, 739
PkrI GCNGC 3 cut(s) 82, 1096, 1249
PleI GAGTC 2 cut(s) 790, 1228
PpsI GAGTC 2 cut(s) 790, 1228
PsiI TTATAA 2 cut(s) 572, 644
Psp124BI GAGCTC 1 cut(s) 1006
Psp6I CCWGG 3 cut(s) 679, 739, 1250
PspGI CCWGG 3 cut(s) 679, 739, 1250
PspN4I GGNNCC 1 cut(s) 1068
PspPI GGNCC 1 cut(s) 1190
RruI TCGCGA 1 cut(s) 1232
RsaI GTAC 5 cut(s) 399, 605, 749, 1120, 1148
RsaNI GTAC 5 cut(s) 398, 604, 748, 1119, 1147
SacI GAGCTC 1 cut(s) 1006
SaqAI TTAA 5 cut(s) 345, 507, 582, 1155, 1287
SatI GCNGC 3 cut(s) 81, 1095, 1248
Sau3AI GATC 7 cut(s) 199, 384, 462, 513, 551, 1195, 1213
Sau96I GGNCC 1 cut(s) 1190
SchI GAGTC 2 cut(s) 791, 1229
ScrFI CCNGG 3 cut(s) 681, 741, 1252
SduI GDGCHC 1 cut(s) 1006
SfaNI GCATC 4 cut(s) 15, 305, 825, 853
SinI GGWCC 1 cut(s) 1190
SmlI CTYRAG 1 cut(s) 1280
SmoI CTYRAG 1 cut(s) 1280
Sse9I AATT 9 cut(s) 127, 282, 563, 724, 735, 770, 952, 1152, 1354
SsiI CCGC 1 cut(s) 556
SspMI CTAG 1 cut(s) 1334
SstI GAGCTC 1 cut(s) 1006
StyD4I CCNGG 3 cut(s) 679, 739, 1250
StyI CCWWGG 2 cut(s) 587, 1044
TaaI ACNGT 4 cut(s) 258, 304, 608, 1114
TaqI TCGA 5 cut(s) 14, 202, 213, 550, 610
TasI AATT 9 cut(s) 127, 282, 563, 724, 735, 770, 952, 1152, 1354
TatI WGTACW 2 cut(s) 603, 1146
TfiI GAWTC 2 cut(s) 11, 1276
Tru1I TTAA 5 cut(s) 345, 507, 582, 1155, 1287
Tru9I TTAA 5 cut(s) 345, 507, 582, 1155, 1287
TscAI CASTG 6 cut(s) 226, 465, 677, 994, 1035, 1056
TseFI GTSAC 1 cut(s) 388
TseI GCWGC 3 cut(s) 80, 1094, 1247
Tsp45I GTSAC 1 cut(s) 388
TspDTI ATGAA 7 cut(s) 395, 488, 723, 815, 833, 894, 1340
TspRI CASTG 6 cut(s) 226, 465, 677, 994, 1035, 1056
VpaK11BI GGWCC 1 cut(s) 1190
XapI RAATTY 2 cut(s) 735, 952
XceI RCATGY 1 cut(s) 809
XcmI CCANNNNNNNNNTGG 1 cut(s) 1051
XspI CTAG 1 cut(s) 1334
Zsp2I ATGCAT 2 cut(s) 298, 846
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.