MD11G1160800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0004781
Physical Location & Seq
Reverse (-)
15873702 .. 15885019
11318 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1160800.v1.1.491

Sequence Viewer

Length: 486 bp
ATGGATGTTGATTCACAGCCATCTATGGAGGAAACTATTATGGTCGGCGATGACCTGATGACAGGCCCACCATCACCAGTTATTCCACCAGAAATTGCTTCTCATGTGCTTGAAGGTGTTGACTTGTGCGACGGGGTTTTGAGGAATCTATTTTTGTGCCTGCAAATCAATGATATTGAGCCCTTCTGTCAAGATGAGCTTGTTATGTATAAACAGTGCACTGAAAAAAGGGATAGGGAACTAAGAAAACGACTTCAGGACAGTGAGCGCAAACTAGGGTTATCAATGCCTTTAAATGAAGCAAAGGAAAGAGCTTCTCAACTCGAAAAAGAGGTCACATCATTAGATAGGCGTTTGATTCTTGCTAGTGGACTTGAAGGCATAGACGGATTTCGCCAGAGATGGAGTTTGCATGGTCGCCTTACAGATACCAAGAAAAGGTTGGAGTCCTTGAAGCAGGGAATGGAGAGCAGGAAAAAGGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.41

Weight (kDa)

5.23

Isoelectric Point (pI)

67.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 1 - 161 5.9e-94 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 3 cut(s) 113, 377, 454
AluBI AGCT 2 cut(s) 199, 314
AluI AGCT 2 cut(s) 199, 314
Alw21I GWGCWC 1 cut(s) 221
Alw44I GTGCAC 1 cut(s) 217
AoxI GGCC 1 cut(s) 64
ApaLI GTGCAC 1 cut(s) 217
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
AspLEI GCGC 1 cut(s) 270
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 221
BccI CCATC 3 cut(s) 28, 79, 396
BfaI CTAG 2 cut(s) 275, 366
BmgT120I GGNCC 1 cut(s) 65
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse1I ACTGG 1 cut(s) 77
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 438
BseNI ACTGG 1 cut(s) 77
BseSI GKGCMC 1 cut(s) 221
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 221
BslI CCNNNNNNNGG 1 cut(s) 438
BsnI GGCC 1 cut(s) 66
Bsp1286I GDGCHC 2 cut(s) 183, 221
BspANI GGCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 216, 263
BstC8I GCNNGC 1 cut(s) 161
BstDEI CTNAG 1 cut(s) 242
BstF5I GGATG 1 cut(s) 10
BstHHI GCGC 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 221
BsuRI GGCC 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 3 cut(s) 219, 221, 268
Cac8I GCNNGC 1 cut(s) 161
CfoI GCGC 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 65
CviAII CATG 2 cut(s) 104, 413
CviJI RGCY 5 cut(s) 19, 66, 181, 199, 314
CviKI_1 RGCY 5 cut(s) 19, 66, 181, 199, 314
DdeI CTNAG 1 cut(s) 242
DraI TTTAAA 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 183
Eco57I CTGAAG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 183
FaeI CATG 2 cut(s) 107, 416
FaiI YATR 7 cut(s) 26, 41, 105, 206, 210, 383, 414
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 2 cut(s) 103, 412
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 183
FspBI CTAG 2 cut(s) 275, 366
GlaI GCGC 1 cut(s) 269
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 1 cut(s) 270
Hin1II CATG 2 cut(s) 107, 416
Hin6I GCGC 1 cut(s) 268
HinP1I GCGC 1 cut(s) 268
HincII GTYRAC 1 cut(s) 121
HindII GTYRAC 1 cut(s) 121
HinfI GANTC 4 cut(s) 11, 145, 358, 446
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 3 cut(s) 121, 219, 371
Hpy188III TCNNGA 2 cut(s) 191, 257
Hpy8I GTNNAC 3 cut(s) 121, 219, 371
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 3 cut(s) 107, 193, 371
HpyCH4III ACNGT 2 cut(s) 216, 263
HpyCH4V TGCA 3 cut(s) 163, 219, 412
HpyF3I CTNAG 1 cut(s) 242
Hsp92II CATG 2 cut(s) 107, 416
HspAI GCGC 1 cut(s) 268
LpnPI CCDG 9 cut(s) 48, 68, 90, 102, 173, 242, 410, 443, 457
MaeI CTAG 2 cut(s) 275, 366
MaeIII GTNAC 1 cut(s) 334
MhlI GDGCHC 2 cut(s) 183, 221
MluCI AATT 1 cut(s) 93
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 3 cut(s) 22, 135, 325
MseI TTAA 1 cut(s) 293
NlaIII CATG 2 cut(s) 107, 416
NmuCI GTSAC 1 cut(s) 334
PfeI GAWTC 3 cut(s) 11, 145, 358
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PspPI GGNCC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 293
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 455
SduI GDGCHC 2 cut(s) 183, 221
SetI ASST 6 cut(s) 57, 118, 201, 316, 336, 443
Sse9I AATT 1 cut(s) 93
SspMI CTAG 2 cut(s) 275, 366
TaaI ACNGT 2 cut(s) 216, 263
TaqI TCGA 1 cut(s) 324
TasI AATT 1 cut(s) 93
TfiI GAWTC 3 cut(s) 11, 145, 358
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 3 cut(s) 221, 226, 268
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 312
TspGWI ACGGA 1 cut(s) 402
TspRI CASTG 3 cut(s) 221, 226, 268
VneI GTGCAC 1 cut(s) 217
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XspI CTAG 2 cut(s) 275, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.