RchiOBHm_Chr5g0054661

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0004781
Physical Location & Seq
Reverse (-)
57293984 .. 57297784
3801 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ33177

Sequence Viewer

Length: 486 bp
ATGGATGTTGATTCACAACCAACTATGGAGGAAACCATTTTGGTGGGAGATGATCTAATGATGGGCCCGCCATCACCAATAATTCCACCGGAAATTGCTTCTCATGTGCTTGAAGGTGTTGATTTGTGTGATGGGATATTAAAGAACCTATTTCTATGTCTGCAAATCAATGATATTGAGCCATTCTGTCAAGATGAGCTTGCTATGTATAAACAGTGTGCTGAAAAAAGAGATCGGGAACTGAGGAAACGACTTCAGGACAGTGAGCAGAAACTGGGGATGTCGATTCCTTTAAATGATGCAAAGGAAAGAGCTTCTCAGCTTGAAACAGAGGTCACATCATTAGATAGACGCTTGATTCTTGCTAGTGGACTTGAAGGCATAGAAGGATTTCGCCAGAGATGGAGTTTGCATGGTCGCCTAACAGACACCAAGAAAAGGTTGGAGTCCTTGAAGCAGGGAATGGAGAACAGGAAAAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.39

Weight (kDa)

5.02

Isoelectric Point (pI)

66.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 1 - 161 1.5e-94 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 239
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 4 cut(s) 113, 326, 377, 454
AluBI AGCT 3 cut(s) 199, 314, 322
AluI AGCT 3 cut(s) 199, 314, 322
AlwNI CAGNNNCTG 1 cut(s) 274
AoxI GGCC 1 cut(s) 64
ApaI GGGCCC 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 390
AspS9I GGNCC 2 cut(s) 64, 65
AsuHPI GGTGA 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 68
BccI CCATC 4 cut(s) 55, 79, 125, 396
BfaI CTAG 1 cut(s) 366
BmgT120I GGNCC 2 cut(s) 64, 65
BmiI GGNNCC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 289
BmuI ACTGGG 1 cut(s) 284
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse1I ACTGG 1 cut(s) 279
BseGI GGATG 2 cut(s) 10, 285
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 233, 332
BseNI ACTGG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 68
BshFI GGCC 1 cut(s) 66
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 438
BsnI GGCC 1 cut(s) 66
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 52, 232
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 234, 331
BspLI GGNNCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 279
BssMI GATC 2 cut(s) 52, 232
Bst4CI ACNGT 2 cut(s) 216, 263
BstC8I GCNNGC 2 cut(s) 68, 201
BstDEI CTNAG 2 cut(s) 242, 318
BstF5I GGATG 2 cut(s) 10, 285
BstKTI GATC 2 cut(s) 55, 235
BstMBI GATC 2 cut(s) 52, 232
BstSLI GKGCMC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 10, 285
BtsIMutI CAGTG 2 cut(s) 221, 268
Cac8I GCNNGC 2 cut(s) 68, 201
CaiI CAGNNNCTG 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 64, 65
CseI GACGC 1 cut(s) 360
CviAII CATG 2 cut(s) 104, 413
CviJI RGCY 5 cut(s) 66, 181, 199, 314, 322
CviKI_1 RGCY 5 cut(s) 66, 181, 199, 314, 322
DdeI CTNAG 2 cut(s) 242, 318
DpnI GATC 2 cut(s) 54, 234
DpnII GATC 2 cut(s) 52, 232
DraI TTTAAA 1 cut(s) 294
Eco24I GRGCYC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 2 cut(s) 107, 416
FaiI YATR 7 cut(s) 26, 105, 157, 206, 210, 383, 414
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 2 cut(s) 103, 412
FauI CCCGC 1 cut(s) 75
FokI GGATG 2 cut(s) 17, 292
FriOI GRGCYC 1 cut(s) 68
FspBI CTAG 1 cut(s) 366
HaeIII GGCC 1 cut(s) 66
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 360
Hin1II CATG 2 cut(s) 107, 416
HinfI GANTC 4 cut(s) 11, 286, 358, 446
HpaII CCGG 1 cut(s) 89
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 371
Hpy188III TCNNGA 3 cut(s) 191, 236, 257
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 107, 371, 380
HpyCH4III ACNGT 2 cut(s) 216, 263
HpyCH4V TGCA 3 cut(s) 163, 302, 412
HpyF3I CTNAG 2 cut(s) 242, 318
Hsp92II CATG 2 cut(s) 107, 416
Kzo9I GATC 2 cut(s) 52, 232
LpnPI CCDG 6 cut(s) 102, 242, 260, 410, 443, 457
LweI GCATC 1 cut(s) 289
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 54, 234
MboI GATC 2 cut(s) 52, 232
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 81, 93
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 3 cut(s) 22, 237, 325
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 2 cut(s) 140, 293
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 89
NdeII GATC 2 cut(s) 52, 232
NlaIII CATG 2 cut(s) 107, 416
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 3 cut(s) 11, 286, 358
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PspN4I GGNNCC 1 cut(s) 66
PspOMI GGGCCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 64, 65
PstNI CAGNNNCTG 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 140, 293
Sau3AI GATC 2 cut(s) 52, 232
Sau96I GGNCC 2 cut(s) 64, 65
SchI GAGTC 1 cut(s) 455
SduI GDGCHC 1 cut(s) 68
SetI ASST 7 cut(s) 118, 150, 201, 316, 324, 336, 443
SfaNI GCATC 1 cut(s) 289
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 2 cut(s) 81, 93
SsiI CCGC 1 cut(s) 68
SspMI CTAG 1 cut(s) 366
TaaI ACNGT 2 cut(s) 216, 263
TaqI TCGA 1 cut(s) 284
TasI AATT 2 cut(s) 81, 93
TfiI GAWTC 3 cut(s) 11, 286, 358
Tru1I TTAA 2 cut(s) 140, 293
Tru9I TTAA 2 cut(s) 140, 293
TscAI CASTG 2 cut(s) 221, 268
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspRI CASTG 2 cut(s) 221, 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.