Rroxscaffold_1G00026000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004781
Physical Location & Seq
Forward (+)
32695339 .. 32698114
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026000.1

Sequence Viewer

Length: 462 bp
ATGGAGGAAACCATTTTGGTGGGAGATGATCTAATGATGGGCCCGCCATCACCAATAATTCCACAAGAAATTGCTTCTCATGTGCTTGAAGGTGTTGATTTGTGTGATGGGATTTTAAAGAATCTATTTCTATGTCTACAAATCAATGATATTGAGCCATTCTGTCAAGATGAGCTTGCTATGTATAAACAGTGTGCTGAAAAAAGAGGATCGGGAACTGAGGAACGACTTCAGGACAGTGAGCAGAAACTGGGGTTGTCGATGCCTTTAAATGATGCAAAGGAAAGAGTTTCTCAGCTTGAAACAGAGGTCACATCATTAGATAGGCGCTTGATTCTCGCTAGTGGACTTGAAGGCGTAGAAGGATTTCGCCAGAGATGGAGTTTGCACGGTCGCCTTACAGACACCAAGAAAAGGTTGGAGTCCTTGAAGCAGGGAATGGAGAACAGGAAAAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.33

Weight (kDa)

4.92

Isoelectric Point (pI)

64.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 1 - 153 7e-87 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 44
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 4 cut(s) 89, 302, 353, 430
AluBI AGCT 2 cut(s) 175, 298
AluI AGCT 2 cut(s) 175, 298
AlwI GGATC 1 cut(s) 217
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 1 cut(s) 40
ApaI GGGCCC 1 cut(s) 44
Asp700I GAANNNNTTC 2 cut(s) 228, 366
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 40, 41
AsuHPI GGTGA 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 44
BccI CCATC 4 cut(s) 31, 55, 101, 372
BfaI CTAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 40, 41
BmiI GGNNCC 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 252, 265
BmuI ACTGGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 255
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 210, 308
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 414
BsnI GGCC 1 cut(s) 42
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 28, 209
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 211, 307
BspLI GGNNCC 1 cut(s) 42
BspPI GGATC 1 cut(s) 217
BsrI ACTGG 1 cut(s) 255
BssMI GATC 2 cut(s) 28, 209
Bst4CI ACNGT 3 cut(s) 192, 239, 392
BstC8I GCNNGC 2 cut(s) 44, 177
BstDEI CTNAG 2 cut(s) 219, 294
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 2 cut(s) 31, 212
BstMBI GATC 2 cut(s) 28, 209
BstMCI CGRYCG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 197, 244
Cac8I GCNNGC 2 cut(s) 44, 177
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 40, 41
CviAII CATG 1 cut(s) 80
CviJI RGCY 4 cut(s) 42, 157, 175, 298
CviKI_1 RGCY 4 cut(s) 42, 157, 175, 298
DdeI CTNAG 2 cut(s) 219, 294
DpnI GATC 2 cut(s) 30, 211
DpnII GATC 2 cut(s) 28, 209
DraI TTTAAA 2 cut(s) 117, 270
Eco24I GRGCYC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 1 cut(s) 83
FaiI YATR 4 cut(s) 81, 133, 182, 186
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 79
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 44
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 1 cut(s) 42
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 3 cut(s) 121, 334, 422
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 137, 347
Hpy188III TCNNGA 3 cut(s) 167, 213, 233
Hpy8I GTNNAC 2 cut(s) 137, 347
HpyAV CCTTC 3 cut(s) 83, 347, 356
HpyCH4III ACNGT 3 cut(s) 192, 239, 392
HpyCH4V TGCA 2 cut(s) 278, 388
HpyF3I CTNAG 2 cut(s) 219, 294
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 28, 209
LpnPI CCDG 5 cut(s) 218, 236, 386, 419, 433
LweI GCATC 2 cut(s) 252, 265
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 30, 211
MboI GATC 2 cut(s) 28, 209
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 2 cut(s) 57, 69
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 3 cut(s) 200, 214, 301
MroXI GAANNNNTTC 2 cut(s) 228, 366
MseI TTAA 2 cut(s) 116, 269
MslI CAYNNNNRTG 1 cut(s) 17
NdeII GATC 2 cut(s) 28, 209
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 310
PdmI GAANNNNTTC 2 cut(s) 228, 366
PfeI GAWTC 2 cut(s) 121, 334
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 42
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 40, 41
PstNI CAGNNNCTG 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 116, 269
Sau3AI GATC 2 cut(s) 28, 209
Sau96I GGNCC 2 cut(s) 40, 41
SchI GAGTC 1 cut(s) 431
SduI GDGCHC 1 cut(s) 44
SetI ASST 5 cut(s) 94, 177, 300, 312, 419
SfaNI GCATC 2 cut(s) 252, 265
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 2 cut(s) 57, 69
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 3 cut(s) 192, 239, 392
TaqI TCGA 1 cut(s) 260
TasI AATT 2 cut(s) 57, 69
TfiI GAWTC 2 cut(s) 121, 334
Tru1I TTAA 2 cut(s) 116, 269
Tru9I TTAA 2 cut(s) 116, 269
TscAI CASTG 2 cut(s) 197, 244
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspRI CASTG 2 cut(s) 197, 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 136
XmnI GAANNNNTTC 2 cut(s) 228, 366
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.