Prupe.6G124400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0004781
Physical Location & Seq
Reverse (-)
9311157 .. 9315171
4015 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G124400.1

Sequence Viewer

Length: 486 bp
ATGGATGTTGATTCACAGCCAACTATGGAGGAAACTATTTTGGTAGGCGATGATCTAATGACAGGCCCACCATCACCCGTTATTCCACCAGAAATTGCTTCTCATGTGCTTGAAGGTGTTGATATGTGTGATGGGATATTGAGGAATCTATTTTTGTGTCTGCAAATCAATGATATTGAGCCATTCTGTCAAGATGAGCTTGTTATGTATAAACAGTGCGCTGAAAAAAGGGATAGGGAACTAAGGAAACGACTTCAAGACAGTGAGCGCAAACTGGGGTTATCAATGCCTTTAAATGAAGCAAAGGAAAGAGCTTCTCAGCTCGAAAAAGAGGTCACATCATTAGATAGGCGCTTGATACTTGCTAGTGGACTTGAAGGCATAGAAGGTTTTCGGCAGAGATGGAGTTTGCATGGTCGCCTTACAGATACCAAGAAAAGGTTGGAGTCCTTGAAGCAGGGAATGGAGACCAGGAAAAAGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

18.44

Weight (kDa)

5.24

Isoelectric Point (pI)

65.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 4 cut(s) 113, 257, 377, 454
AjnI CCWGG 1 cut(s) 470
AluBI AGCT 3 cut(s) 199, 314, 322
AluI AGCT 3 cut(s) 199, 314, 322
Alw26I GTCTC 1 cut(s) 461
AoxI GGCC 1 cut(s) 64
ArsI GACNNNNNNTTYG 2 cut(s) 318, 350
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 3 cut(s) 221, 270, 354
AspS9I GGNCC 1 cut(s) 65
AsuHPI GGTGA 1 cut(s) 66
BccI CCATC 3 cut(s) 79, 125, 396
BciT130I CCWGG 1 cut(s) 472
BcoDI GTCTC 1 cut(s) 461
BfaI CTAG 2 cut(s) 366, 484
BfoI RGCGCY 1 cut(s) 355
Bme1390I CCNGG 1 cut(s) 472
BmgT120I GGNCC 1 cut(s) 65
BmrFI CCNGG 1 cut(s) 472
BmrI ACTGGG 1 cut(s) 284
BmuI ACTGGG 1 cut(s) 284
BsaI GGTCTC 1 cut(s) 461
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse1I ACTGG 1 cut(s) 279
BseBI CCWGG 1 cut(s) 472
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 1 cut(s) 332
BseNI ACTGG 1 cut(s) 279
BshFI GGCC 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 438
BsmAI GTCTC 1 cut(s) 461
BsnI GGCC 1 cut(s) 66
Bso31I GGTCTC 1 cut(s) 461
Bsp143I GATC 1 cut(s) 52
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 461
BsrI ACTGG 1 cut(s) 279
BssMI GATC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 472
Bst4CI ACNGT 2 cut(s) 216, 263
BstDEI CTNAG 2 cut(s) 242, 318
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 3 cut(s) 221, 270, 354
BstKTI GATC 1 cut(s) 55
BstMAI GTCTC 1 cut(s) 461
BstMBI GATC 1 cut(s) 52
BstNI CCWGG 1 cut(s) 472
BstSCI CCNGG 1 cut(s) 470
BsuRI GGCC 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 63
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 221, 268
CfoI GCGC 3 cut(s) 221, 270, 354
Cfr13I GGNCC 1 cut(s) 65
CviAII CATG 2 cut(s) 104, 413
CviJI RGCY 6 cut(s) 19, 66, 181, 199, 314, 322
CviKI_1 RGCY 6 cut(s) 19, 66, 181, 199, 314, 322
DdeI CTNAG 2 cut(s) 242, 318
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
DraI TTTAAA 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 461
EcoRII CCWGG 1 cut(s) 470
FaeI CATG 2 cut(s) 107, 416
FaiI YATR 7 cut(s) 26, 105, 125, 206, 210, 383, 414
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 2 cut(s) 103, 412
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 366, 484
GlaI GCGC 3 cut(s) 220, 269, 353
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 3 cut(s) 221, 270, 354
Hin1II CATG 2 cut(s) 107, 416
Hin6I GCGC 3 cut(s) 219, 268, 352
HinP1I GCGC 3 cut(s) 219, 268, 352
HinfI GANTC 3 cut(s) 11, 145, 446
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 1 cut(s) 371
Hpy188III TCNNGA 2 cut(s) 191, 257
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 3 cut(s) 107, 371, 380
HpyCH4III ACNGT 2 cut(s) 216, 263
HpyCH4V TGCA 2 cut(s) 163, 412
HpyF3I CTNAG 2 cut(s) 242, 318
Hsp92II CATG 2 cut(s) 107, 416
HspAI GCGC 3 cut(s) 219, 268, 352
Kzo9I GATC 1 cut(s) 52
LpnPI CCDG 5 cut(s) 48, 102, 260, 443, 457
MaeI CTAG 2 cut(s) 366, 484
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MluCI AATT 1 cut(s) 93
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 3 cut(s) 22, 135, 325
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 1 cut(s) 293
MspR9I CCNGG 1 cut(s) 472
MvaI CCWGG 1 cut(s) 472
NdeII GATC 1 cut(s) 52
NlaIII CATG 2 cut(s) 107, 416
NmuCI GTSAC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 2 cut(s) 11, 145
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
Psp6I CCWGG 1 cut(s) 470
PspGI CCWGG 1 cut(s) 470
PspPI GGNCC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 293
Sau3AI GATC 1 cut(s) 52
Sau96I GGNCC 1 cut(s) 65
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 1 cut(s) 472
SetI ASST 7 cut(s) 118, 201, 316, 324, 336, 391, 443
Sse9I AATT 1 cut(s) 93
SspMI CTAG 2 cut(s) 366, 484
StyD4I CCNGG 1 cut(s) 470
TaaI ACNGT 2 cut(s) 216, 263
TaqI TCGA 1 cut(s) 324
TasI AATT 1 cut(s) 93
TfiI GAWTC 2 cut(s) 11, 145
Tru1I TTAA 1 cut(s) 293
Tru9I TTAA 1 cut(s) 293
TscAI CASTG 2 cut(s) 221, 268
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 312
TspRI CASTG 2 cut(s) 221, 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 2 cut(s) 366, 484
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.