Rmu_sc0019242.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019242.1
OG0004781
Physical Location & Seq
Reverse (-)
38826 .. 41224
2399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019242.1_g000005.1.cds

Sequence Viewer

Length: 462 bp
atggaggaaaccattttggtgggagatgatctaatgatgggcccgccatcaccaataattccacctgaaattgcttctcatgtgcttgaaggtgttgatttgtgtgatgggattttaaagaatctatttctatgtctgcaaatcaatgatattgagcctttctgtcaagatgagcttgctatgtataaacagtgtgctgaaaaaagagatcgggaactgaggaaacgacttcaggacagtgagcagaaactggggatgtcaatgcctttaaatgatgcaaaggaaagagcttctcagcttgaaacagaggtcacatcattagatagacgcttgattcttgctagtggacttgaaggcatagaaggatttcgccagagatggagtttgcatggtcgcctaacagacaccaagaaaaggttggagtccttgaagcagggaatggagaacaggaaaagggagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

153

Amino Acids

17.54

Weight (kDa)

5.23

Isoelectric Point (pI)

70.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 4 cut(s) 89, 302, 353, 430
AluBI AGCT 3 cut(s) 175, 290, 298
AluI AGCT 3 cut(s) 175, 290, 298
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 1 cut(s) 40
ApaI GGGCCC 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 366
AspS9I GGNCC 2 cut(s) 40, 41
AsuHPI GGTGA 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 44
BccI CCATC 4 cut(s) 31, 55, 101, 372
BfaI CTAG 1 cut(s) 342
BmgT120I GGNCC 2 cut(s) 40, 41
BmiI GGNNCC 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 1 cut(s) 265
BmuI ACTGGG 1 cut(s) 260
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 255
BseGI GGATG 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 209, 308
BseNI ACTGG 1 cut(s) 255
BseSI GKGCMC 1 cut(s) 44
BshFI GGCC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 414
BsnI GGCC 1 cut(s) 42
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 28, 208
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 210, 307
BspLI GGNNCC 1 cut(s) 42
BsrI ACTGG 1 cut(s) 255
BssMI GATC 2 cut(s) 28, 208
Bst4CI ACNGT 2 cut(s) 192, 239
BstC8I GCNNGC 2 cut(s) 44, 177
BstDEI CTNAG 2 cut(s) 218, 294
BstF5I GGATG 1 cut(s) 261
BstKTI GATC 2 cut(s) 31, 211
BstMBI GATC 2 cut(s) 28, 208
BstSLI GKGCMC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 261
BtsIMutI CAGTG 2 cut(s) 197, 244
Cac8I GCNNGC 2 cut(s) 44, 177
CaiI CAGNNNCTG 1 cut(s) 250
Cfr13I GGNCC 2 cut(s) 40, 41
CseI GACGC 1 cut(s) 336
CviAII CATG 2 cut(s) 80, 389
CviJI RGCY 5 cut(s) 42, 157, 175, 290, 298
CviKI_1 RGCY 5 cut(s) 42, 157, 175, 290, 298
DdeI CTNAG 2 cut(s) 218, 294
DpnI GATC 2 cut(s) 30, 210
DpnII GATC 2 cut(s) 28, 208
DraI TTTAAA 2 cut(s) 117, 270
Eco24I GRGCYC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 2 cut(s) 83, 392
FaiI YATR 6 cut(s) 81, 133, 182, 186, 359, 390
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 2 cut(s) 79, 388
FauI CCCGC 1 cut(s) 51
FokI GGATG 1 cut(s) 268
FriOI GRGCYC 1 cut(s) 44
FspBI CTAG 1 cut(s) 342
HaeIII GGCC 1 cut(s) 42
HgaI GACGC 1 cut(s) 336
Hin1II CATG 2 cut(s) 83, 392
HinfI GANTC 3 cut(s) 121, 334, 422
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 1 cut(s) 347
Hpy188III TCNNGA 3 cut(s) 167, 212, 233
Hpy8I GTNNAC 1 cut(s) 347
HpyAV CCTTC 3 cut(s) 83, 347, 356
HpyCH4III ACNGT 2 cut(s) 192, 239
HpyCH4V TGCA 3 cut(s) 139, 278, 388
HpyF3I CTNAG 2 cut(s) 218, 294
Hsp92II CATG 2 cut(s) 83, 392
Kzo9I GATC 2 cut(s) 28, 208
LpnPI CCDG 6 cut(s) 78, 218, 236, 386, 419, 433
LweI GCATC 1 cut(s) 265
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 30, 210
MboI GATC 2 cut(s) 28, 208
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 2 cut(s) 57, 69
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 2 cut(s) 213, 301
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 2 cut(s) 116, 269
MslI CAYNNNNRTG 1 cut(s) 17
NdeII GATC 2 cut(s) 28, 208
NlaIII CATG 2 cut(s) 83, 392
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 121, 334
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 42
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 40, 41
PstNI CAGNNNCTG 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 116, 269
Sau3AI GATC 2 cut(s) 28, 208
Sau96I GGNCC 2 cut(s) 40, 41
SchI GAGTC 1 cut(s) 431
SduI GDGCHC 1 cut(s) 44
SetI ASST 7 cut(s) 67, 94, 177, 292, 300, 312, 419
SfaNI GCATC 1 cut(s) 265
SmiMI CAYNNNNRTG 1 cut(s) 17
Sse9I AATT 2 cut(s) 57, 69
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 2 cut(s) 192, 239
TasI AATT 2 cut(s) 57, 69
TfiI GAWTC 2 cut(s) 121, 334
Tru1I TTAA 2 cut(s) 116, 269
Tru9I TTAA 2 cut(s) 116, 269
TscAI CASTG 2 cut(s) 197, 244
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspRI CASTG 2 cut(s) 197, 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.