RLG00000034943

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0004781
Physical Location & Seq
Reverse (-)
57425827 .. 57428327
2501 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000034943

Sequence Viewer

Length: 462 bp
ATGGAGGAAACCATTTTGGTGGGAGATGATCTAATGATGGGCCCGCCATCACCAGTAATTCCACAAGAAATTGCCTCTCATGTGCTTGAAGGTGTTGATTTGTGTGATGGGATTTTAAAGAATCTATTTCTATGTCTACAAATCAATGATATTGAGCCATTCTGTCAAGATGAGCTTGCTATGTATAAACAGTGTGCTGAAAAAAGAGATCGGGAACTGAGGAAACGACTTCAGGACAGTGAGCAGAAACTGGGGTTGTCGATGCCTTTAAATGATGCAAAGGAAAGAGCTTCTCAGCTTGAAACAGAGGTCACATCATTAGATAGGCGCTTGATTCTCGCTAGTGGACTTGAAGGCATAGAAGGATTTCGCCAGAGATGGAGTTTGCACGGTCGCCTTACAGACACCAAGAAAAGGTTGGAGTCCTTGAGGCAGGGAATGGAAAACAGGAAAAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

154

Amino Acids

17.57

Weight (kDa)

5.23

Isoelectric Point (pI)

70.07

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 1 - 153 3.2e-90 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 136
AciI CCGC 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 3 cut(s) 89, 302, 353
AluBI AGCT 3 cut(s) 175, 290, 298
AluI AGCT 3 cut(s) 175, 290, 298
AlwNI CAGNNNCTG 1 cut(s) 250
AoxI GGCC 1 cut(s) 40
ApaI GGGCCC 1 cut(s) 44
Asp700I GAANNNNTTC 1 cut(s) 366
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 2 cut(s) 40, 41
AsuHPI GGTGA 1 cut(s) 42
BaeGI GKGCMC 1 cut(s) 44
BanII GRGCYC 1 cut(s) 44
BccI CCATC 4 cut(s) 31, 55, 101, 372
BfaI CTAG 1 cut(s) 342
BfoI RGCGCY 1 cut(s) 331
BmgT120I GGNCC 2 cut(s) 40, 41
BmiI GGNNCC 1 cut(s) 42
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 2 cut(s) 252, 265
BmuI ACTGGG 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 448
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 2 cut(s) 53, 255
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 2 cut(s) 209, 308
BseNI ACTGG 2 cut(s) 53, 255
BseSI GKGCMC 1 cut(s) 44
Bsh1285I CGRYCG 1 cut(s) 394
BshFI GGCC 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 394
BslI CCNNNNNNNGG 1 cut(s) 414
BsnI GGCC 1 cut(s) 42
Bsp120I GGGCCC 1 cut(s) 40
Bsp1286I GDGCHC 1 cut(s) 44
Bsp143I GATC 2 cut(s) 28, 208
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 42
BspCNI CTCAG 2 cut(s) 210, 307
BspLI GGNNCC 1 cut(s) 42
BsrI ACTGG 2 cut(s) 53, 255
BssMI GATC 2 cut(s) 28, 208
Bst4CI ACNGT 3 cut(s) 192, 239, 392
BstC8I GCNNGC 2 cut(s) 44, 177
BstDEI CTNAG 2 cut(s) 218, 294
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstKTI GATC 2 cut(s) 31, 211
BstMBI GATC 2 cut(s) 28, 208
BstMCI CGRYCG 1 cut(s) 394
BstSLI GKGCMC 1 cut(s) 44
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 1 cut(s) 42
BtsIMutI CAGTG 2 cut(s) 197, 244
Cac8I GCNNGC 2 cut(s) 44, 177
CaiI CAGNNNCTG 1 cut(s) 250
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 2 cut(s) 40, 41
CviAII CATG 1 cut(s) 80
CviJI RGCY 5 cut(s) 42, 157, 175, 290, 298
CviKI_1 RGCY 5 cut(s) 42, 157, 175, 290, 298
DdeI CTNAG 2 cut(s) 218, 294
DpnI GATC 2 cut(s) 30, 210
DpnII GATC 2 cut(s) 28, 208
DraI TTTAAA 2 cut(s) 117, 270
Eco24I GRGCYC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 44
FaeI CATG 1 cut(s) 83
FaiI YATR 5 cut(s) 81, 133, 182, 186, 359
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FatI CATG 1 cut(s) 79
FauI CCCGC 1 cut(s) 51
FblI GTMKAC 1 cut(s) 136
FriOI GRGCYC 1 cut(s) 44
FspBI CTAG 1 cut(s) 342
GlaI GCGC 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 1 cut(s) 42
HhaI GCGC 1 cut(s) 330
Hin1II CATG 1 cut(s) 83
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HinfI GANTC 3 cut(s) 121, 334, 422
HphI GGTGA 1 cut(s) 42
Hpy166II GTNNAC 2 cut(s) 137, 347
Hpy188III TCNNGA 3 cut(s) 167, 212, 233
Hpy8I GTNNAC 2 cut(s) 137, 347
HpyAV CCTTC 3 cut(s) 83, 347, 356
HpyCH4III ACNGT 3 cut(s) 192, 239, 392
HpyCH4V TGCA 2 cut(s) 278, 388
HpyF3I CTNAG 2 cut(s) 218, 294
Hsp92II CATG 1 cut(s) 83
HspAI GCGC 1 cut(s) 328
Kzo9I GATC 2 cut(s) 28, 208
LpnPI CCDG 6 cut(s) 66, 218, 236, 386, 419, 433
LweI GCATC 2 cut(s) 252, 265
MaeI CTAG 1 cut(s) 342
MaeIII GTNAC 1 cut(s) 310
MalI GATC 2 cut(s) 30, 210
MboI GATC 2 cut(s) 28, 208
MhlI GDGCHC 1 cut(s) 44
MluCI AATT 2 cut(s) 57, 69
MlyI GAGTC 1 cut(s) 431
MmeI TCCRAC 1 cut(s) 399
MnlI CCTC 4 cut(s) 85, 213, 301, 423
MroXI GAANNNNTTC 1 cut(s) 366
MseI TTAA 2 cut(s) 116, 269
MslI CAYNNNNRTG 1 cut(s) 17
NdeII GATC 2 cut(s) 28, 208
NlaIII CATG 1 cut(s) 83
NlaIV GGNNCC 1 cut(s) 42
NmuCI GTSAC 1 cut(s) 310
PdmI GAANNNNTTC 1 cut(s) 366
PfeI GAWTC 2 cut(s) 121, 334
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
PspN4I GGNNCC 1 cut(s) 42
PspOMI GGGCCC 1 cut(s) 40
PspPI GGNCC 2 cut(s) 40, 41
PstNI CAGNNNCTG 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 17
SaqAI TTAA 2 cut(s) 116, 269
Sau3AI GATC 2 cut(s) 28, 208
Sau96I GGNCC 2 cut(s) 40, 41
SchI GAGTC 1 cut(s) 431
SduI GDGCHC 1 cut(s) 44
SetI ASST 6 cut(s) 94, 177, 292, 300, 312, 419
SfaNI GCATC 2 cut(s) 252, 265
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
Sse9I AATT 2 cut(s) 57, 69
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 342
TaaI ACNGT 3 cut(s) 192, 239, 392
TaqI TCGA 1 cut(s) 260
TasI AATT 2 cut(s) 57, 69
TfiI GAWTC 2 cut(s) 121, 334
Tru1I TTAA 2 cut(s) 116, 269
Tru9I TTAA 2 cut(s) 116, 269
TscAI CASTG 2 cut(s) 197, 244
TseFI GTSAC 1 cut(s) 310
Tsp45I GTSAC 1 cut(s) 310
TspRI CASTG 2 cut(s) 197, 244
XcmI CCANNNNNNNNNTGG 1 cut(s) 415
XmiI GTMKAC 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 366
XspI CTAG 1 cut(s) 342
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.