Rroxscaffold_1G00026240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004781
Physical Location & Seq
Forward (+)
33024344 .. 33027177
2834 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00026240.1

Sequence Viewer

Length: 300 bp
ATGGATCGGGAACTGAGGAAACGACTTCAGGACAGTGAGCAGAAACTGGGGTTGTCGATGCCTTTAAATGATGCAAAGGAAAGAGCTTCTCAGCTTGAAACAGAGGTCACATCATTAGATAGGCGCTTGATTCTCGCTAGTGGACTTGAAGGCATAGAAGGATTTCGCCAGAGATGGAGTTTGCACGGTCGCCTTACAGACACCAAGAAAAGGTTGGAGTCCTTGAAGCAGGGGAATGGAGAACAGGAAAAGGGAGTAAGGAGAGTATATTTGTGTGAATCCACTTTCCTTGAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

11.49

Weight (kDa)

7.89

Isoelectric Point (pI)

65.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 2 - 84 3.1e-39 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 12
AcuI CTGAAG 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 210
AgsI TTSAA 3 cut(s) 98, 149, 226
AluBI AGCT 2 cut(s) 86, 94
AluI AGCT 2 cut(s) 86, 94
AlwI GGATC 1 cut(s) 12
AlwNI CAGNNNCTG 1 cut(s) 46
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 1 cut(s) 126
BccI CCATC 1 cut(s) 168
BfaI CTAG 1 cut(s) 138
BfoI RGCGCY 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 48, 61
BmuI ACTGGG 1 cut(s) 56
Bsc4I CCNNNNNNNGG 1 cut(s) 210
Bse1I ACTGG 1 cut(s) 51
BseLI CCNNNNNNNGG 1 cut(s) 210
BseMII CTCAG 2 cut(s) 5, 104
BseNI ACTGG 1 cut(s) 51
Bsh1285I CGRYCG 1 cut(s) 190
BsiEI CGRYCG 1 cut(s) 190
BslI CCNNNNNNNGG 1 cut(s) 210
Bsp143I GATC 1 cut(s) 4
BspCNI CTCAG 2 cut(s) 6, 103
BspPI GGATC 1 cut(s) 12
BsrI ACTGG 1 cut(s) 51
BssMI GATC 1 cut(s) 4
Bst4CI ACNGT 2 cut(s) 35, 188
BstDEI CTNAG 2 cut(s) 14, 90
BstH2I RGCGCY 1 cut(s) 127
BstHHI GCGC 1 cut(s) 126
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstMCI CGRYCG 1 cut(s) 190
BtsIMutI CAGTG 1 cut(s) 40
CaiI CAGNNNCTG 1 cut(s) 46
CfoI GCGC 1 cut(s) 126
CspCI CAANNNNNGTGG 1 cut(s) 271
CviJI RGCY 2 cut(s) 86, 94
CviKI_1 RGCY 2 cut(s) 86, 94
DdeI CTNAG 2 cut(s) 14, 90
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraI TTTAAA 1 cut(s) 66
Eco57I CTGAAG 1 cut(s) 11
FaiI YATR 2 cut(s) 155, 268
FspBI CTAG 1 cut(s) 138
GlaI GCGC 1 cut(s) 125
HaeII RGCGCY 1 cut(s) 127
HhaI GCGC 1 cut(s) 126
Hin6I GCGC 1 cut(s) 124
HinP1I GCGC 1 cut(s) 124
HinfI GANTC 3 cut(s) 130, 218, 278
Hpy166II GTNNAC 1 cut(s) 143
Hpy188III TCNNGA 2 cut(s) 8, 29
Hpy8I GTNNAC 1 cut(s) 143
HpyAV CCTTC 2 cut(s) 143, 152
HpyCH4III ACNGT 2 cut(s) 35, 188
HpyCH4V TGCA 2 cut(s) 74, 184
HpyF3I CTNAG 2 cut(s) 14, 90
HspAI GCGC 1 cut(s) 124
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 5 cut(s) 14, 32, 182, 215, 230
LweI GCATC 2 cut(s) 48, 61
MaeI CTAG 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 106
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 195
MnlI CCTC 3 cut(s) 9, 97, 286
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 65
NdeII GATC 1 cut(s) 4
NmuCI GTSAC 1 cut(s) 106
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 2 cut(s) 130, 278
PleI GAGTC 1 cut(s) 226
PpsI GAGTC 1 cut(s) 226
PstNI CAGNNNCTG 1 cut(s) 46
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 1 cut(s) 4
SchI GAGTC 1 cut(s) 227
SetI ASST 4 cut(s) 88, 96, 108, 215
SfaNI GCATC 2 cut(s) 48, 61
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
SspMI CTAG 1 cut(s) 138
TaaI ACNGT 2 cut(s) 35, 188
TaqI TCGA 1 cut(s) 56
TfiI GAWTC 2 cut(s) 130, 278
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TscAI CASTG 1 cut(s) 40
TseFI GTSAC 1 cut(s) 106
Tsp45I GTSAC 1 cut(s) 106
TspRI CASTG 1 cut(s) 40
XcmI CCANNNNNNNNNTGG 1 cut(s) 211
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 1 cut(s) 138
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.