Rh5AG358600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004781
Physical Location & Seq
Reverse (-)
60144723 .. 60146582
1860 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG358600.1

Sequence Viewer

Length: 414 bp
ATGGATGTTGATTCACAACCAACTATGTTGGAAACCATTTTGGTGGGAGATGATCTGATGATGGGCCCGCCATCACCAATAATTCCACCAGAAATTGCTTCTCATGTGCTTGAAGGTGTTGATTTGTGTGATGGAATTTTAAAGAATCTATTTCTGTGTCTGCAAATCAATGATATTGAGCCATTCTGTCAAGATGAGCTTGCGATGTATAAACAGTGTGCTGAAAAAAGAGATCGGGAACTGAGGAAACGACTTCAGGACACTGAGCAGAAACTGGGGTTGTCGATGCCTTTAAATGATGCAAAGGAAAGATCTTCTCAGCTTGAAACAGAGGTCACATCATTAGATAGATATGTTCTGAAATGGTTACAAGTAATGGAAGTAGCTATCAAGTGCCTGAAGCACTTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.63

Weight (kDa)

4.65

Isoelectric Point (pI)

58.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 1 - 120 2.1e-66 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 68
AcsI RAATTY 1 cut(s) 135
AcuI CTGAAG 1 cut(s) 239
AgsI TTSAA 2 cut(s) 113, 326
AluBI AGCT 3 cut(s) 199, 322, 386
AluI AGCT 3 cut(s) 199, 322, 386
AlwNI CAGNNNCTG 1 cut(s) 274
AoxI GGCC 1 cut(s) 64
ApaI GGGCCC 1 cut(s) 68
ApoI RAATTY 1 cut(s) 135
AspS9I GGNCC 2 cut(s) 64, 65
AsuHPI GGTGA 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 68
BccI CCATC 3 cut(s) 55, 79, 125
BglII AGATCT 1 cut(s) 311
BmgT120I GGNCC 2 cut(s) 64, 65
BmiI GGNNCC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 276, 289
BmuI ACTGGG 1 cut(s) 284
Bse1I ACTGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 3 cut(s) 233, 255, 332
BseNI ACTGG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 68
BshFI GGCC 1 cut(s) 66
BsnI GGCC 1 cut(s) 66
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 3 cut(s) 52, 232, 311
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 3 cut(s) 234, 256, 331
BspLI GGNNCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 279
BssMI GATC 3 cut(s) 52, 232, 311
Bst4CI ACNGT 1 cut(s) 216
BstC8I GCNNGC 2 cut(s) 68, 201
BstDEI CTNAG 3 cut(s) 242, 264, 318
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 55, 235, 314
BstMBI GATC 3 cut(s) 52, 232, 311
BstSLI GKGCMC 1 cut(s) 68
BstX2I RGATCY 1 cut(s) 311
BstXI CCANNNNNNTGG 1 cut(s) 43
BstYI RGATCY 1 cut(s) 311
BsuRI GGCC 1 cut(s) 66
BtgZI GCGATG 1 cut(s) 218
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 221, 261
Cac8I GCNNGC 2 cut(s) 68, 201
CaiI CAGNNNCTG 1 cut(s) 274
Cfr13I GGNCC 2 cut(s) 64, 65
CviAII CATG 1 cut(s) 104
CviJI RGCY 5 cut(s) 66, 181, 199, 322, 386
CviKI_1 RGCY 5 cut(s) 66, 181, 199, 322, 386
DdeI CTNAG 3 cut(s) 242, 264, 318
DpnI GATC 3 cut(s) 54, 234, 313
DpnII GATC 3 cut(s) 52, 232, 311
DraI TTTAAA 2 cut(s) 141, 294
Eco24I GRGCYC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 239
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 1 cut(s) 107
FaiI YATR 4 cut(s) 26, 105, 210, 354
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FatI CATG 1 cut(s) 103
FauI CCCGC 1 cut(s) 75
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 68
HaeIII GGCC 1 cut(s) 66
Hin1II CATG 1 cut(s) 107
HinfI GANTC 2 cut(s) 11, 145
HphI GGTGA 1 cut(s) 66
Hpy188I TCNGA 2 cut(s) 57, 360
Hpy188III TCNNGA 3 cut(s) 191, 236, 257
HpyAV CCTTC 1 cut(s) 107
HpyCH4III ACNGT 1 cut(s) 216
HpyCH4V TGCA 2 cut(s) 163, 302
HpyF3I CTNAG 3 cut(s) 242, 264, 318
Hsp92II CATG 1 cut(s) 107
Kzo9I GATC 3 cut(s) 52, 232, 311
LpnPI CCDG 4 cut(s) 102, 242, 260, 410
LweI GCATC 2 cut(s) 276, 289
MaeIII GTNAC 2 cut(s) 334, 366
MalI GATC 3 cut(s) 54, 234, 313
MboI GATC 3 cut(s) 52, 232, 311
MboII GAAGA 1 cut(s) 306
MflI RGATCY 1 cut(s) 311
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 3 cut(s) 81, 93, 135
MmeI TCCRAC 1 cut(s) 9
MnlI CCTC 2 cut(s) 237, 325
MseI TTAA 2 cut(s) 140, 293
MslI CAYNNNNRTG 1 cut(s) 41
NdeII GATC 3 cut(s) 52, 232, 311
NlaIII CATG 1 cut(s) 107
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 334
PfeI GAWTC 2 cut(s) 11, 145
PspN4I GGNNCC 1 cut(s) 66
PspOMI GGGCCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 64, 65
PstNI CAGNNNCTG 1 cut(s) 274
PsuI RGATCY 1 cut(s) 311
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 140, 293
Sau3AI GATC 3 cut(s) 52, 232, 311
Sau96I GGNCC 2 cut(s) 64, 65
SduI GDGCHC 1 cut(s) 68
SetI ASST 5 cut(s) 118, 201, 324, 336, 388
SfaNI GCATC 2 cut(s) 276, 289
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 3 cut(s) 81, 93, 135
SsiI CCGC 1 cut(s) 68
TaaI ACNGT 1 cut(s) 216
TaqI TCGA 1 cut(s) 284
TasI AATT 3 cut(s) 81, 93, 135
TfiI GAWTC 2 cut(s) 11, 145
Tru1I TTAA 2 cut(s) 140, 293
Tru9I TTAA 2 cut(s) 140, 293
TscAI CASTG 2 cut(s) 221, 268
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspRI CASTG 2 cut(s) 221, 268
XapI RAATTY 1 cut(s) 135
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.