Rroxscaffold_1G00025810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004781
Physical Location & Seq
Forward (+)
32421329 .. 32425292
3964 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00025810.1

Sequence Viewer

Length: 486 bp
ATGGATGTTGATTCACAACCAACTATGGAGGAAACCATTTTGGTGGGAGATGATCTAATGATGGGCCCGCCATCACCAATAATTCCACCAGAAATTGCTTCTCACGTGCTTGAAGGTGTTGATTTGTGTGATGGGATTTTAAAGAATCTATTTCTATGTCTACAAATCAATGATATTGAGCCATTCTGTCAAGATGAGCTTGCTATGTATAAACAGTGTGCTGAAAAAAGAGATCGGGAACTGAGGAAACGACTTCAGGACAGTGAGCAGAAACTGGGGTTGTCGATGCCTTTAAATGATGCAAGGGAAAGAGCTTCTCAGCTTGAAACAGAGGTCACATCATTAGATAGGCGCTTGATTCTCGCTAGTGGACTTGAAGGCATAGAAGGATTTCGCCAGAGATGGAGTTTGCACGGTCGCCTTACAGACACCAAGAAAAGGTTGGAGTCCTTGAAGCAGGGAATGGAGAACAGGAAAAGGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.42

Weight (kDa)

5.02

Isoelectric Point (pI)

66.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7803 PF25086 1 - 161 3.1e-95 Domain of unknown function (DUF7803)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 160
AciI CCGC 1 cut(s) 68
AcuI CTGAAG 1 cut(s) 239
AcvI CACGTG 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 438
AgsI TTSAA 4 cut(s) 113, 326, 377, 454
AluBI AGCT 3 cut(s) 199, 314, 322
AluI AGCT 3 cut(s) 199, 314, 322
AlwNI CAGNNNCTG 1 cut(s) 274
AoxI GGCC 1 cut(s) 64
ApaI GGGCCC 1 cut(s) 68
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 2 cut(s) 64, 65
AsuHPI GGTGA 1 cut(s) 66
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 68
BbrPI CACGTG 1 cut(s) 106
BccI CCATC 4 cut(s) 55, 79, 125, 396
BfaI CTAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 355
BmgT120I GGNCC 2 cut(s) 64, 65
BmiI GGNNCC 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 2 cut(s) 276, 289
BmuI ACTGGG 1 cut(s) 284
BsaAI YACGTR 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 438
Bse1I ACTGG 1 cut(s) 279
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 1 cut(s) 438
BseMII CTCAG 2 cut(s) 233, 332
BseNI ACTGG 1 cut(s) 279
BseSI GKGCMC 1 cut(s) 68
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 1 cut(s) 66
BsiEI CGRYCG 1 cut(s) 418
BslI CCNNNNNNNGG 1 cut(s) 438
BsnI GGCC 1 cut(s) 66
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 2 cut(s) 52, 232
BspACI CCGC 1 cut(s) 68
BspANI GGCC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 234, 331
BspLI GGNNCC 1 cut(s) 66
BsrI ACTGG 1 cut(s) 279
BssMI GATC 2 cut(s) 52, 232
Bst4CI ACNGT 3 cut(s) 216, 263, 416
BstBAI YACGTR 1 cut(s) 106
BstC8I GCNNGC 2 cut(s) 68, 201
BstDEI CTNAG 2 cut(s) 242, 318
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 2 cut(s) 55, 235
BstMBI GATC 2 cut(s) 52, 232
BstMCI CGRYCG 1 cut(s) 418
BstSLI GKGCMC 1 cut(s) 68
BstXI CCANNNNNNTGG 1 cut(s) 43
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 2 cut(s) 221, 268
Cac8I GCNNGC 2 cut(s) 68, 201
CaiI CAGNNNCTG 1 cut(s) 274
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 2 cut(s) 64, 65
CviJI RGCY 5 cut(s) 66, 181, 199, 314, 322
CviKI_1 RGCY 5 cut(s) 66, 181, 199, 314, 322
DdeI CTNAG 2 cut(s) 242, 318
DpnI GATC 2 cut(s) 54, 234
DpnII GATC 2 cut(s) 52, 232
DraI TTTAAA 2 cut(s) 141, 294
Eco24I GRGCYC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 239
Eco72I CACGTG 1 cut(s) 106
EcoT38I GRGCYC 1 cut(s) 68
FaiI YATR 5 cut(s) 26, 157, 206, 210, 383
FalI AAGNNNNNCTT 2 cut(s) 183, 215
FauI CCCGC 1 cut(s) 75
FblI GTMKAC 1 cut(s) 160
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 1 cut(s) 68
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 353
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 1 cut(s) 66
HhaI GCGC 1 cut(s) 354
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 4 cut(s) 11, 145, 358, 446
HphI GGTGA 1 cut(s) 66
Hpy166II GTNNAC 2 cut(s) 161, 371
Hpy188III TCNNGA 3 cut(s) 191, 236, 257
Hpy8I GTNNAC 2 cut(s) 161, 371
HpyAV CCTTC 3 cut(s) 107, 371, 380
HpyCH4III ACNGT 3 cut(s) 216, 263, 416
HpyCH4IV ACGT 1 cut(s) 105
HpyCH4V TGCA 2 cut(s) 302, 412
HpyF3I CTNAG 2 cut(s) 242, 318
HpySE526I ACGT 1 cut(s) 105
HspAI GCGC 1 cut(s) 352
Kzo9I GATC 2 cut(s) 52, 232
LpnPI CCDG 6 cut(s) 102, 242, 260, 410, 443, 457
LweI GCATC 2 cut(s) 276, 289
MaeI CTAG 1 cut(s) 366
MaeII ACGT 1 cut(s) 105
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 54, 234
MboI GATC 2 cut(s) 52, 232
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 2 cut(s) 81, 93
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 1 cut(s) 423
MnlI CCTC 3 cut(s) 22, 237, 325
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 2 cut(s) 140, 293
MslI CAYNNNNRTG 1 cut(s) 41
NdeII GATC 2 cut(s) 52, 232
NlaIV GGNNCC 1 cut(s) 66
NmuCI GTSAC 1 cut(s) 334
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 3 cut(s) 11, 145, 358
PleI GAGTC 1 cut(s) 454
PmaCI CACGTG 1 cut(s) 106
PmlI CACGTG 1 cut(s) 106
PpsI GAGTC 1 cut(s) 454
Ppu21I YACGTR 1 cut(s) 106
PspCI CACGTG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 66
PspOMI GGGCCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 64, 65
PstNI CAGNNNCTG 1 cut(s) 274
RseI CAYNNNNRTG 1 cut(s) 41
SaqAI TTAA 2 cut(s) 140, 293
Sau3AI GATC 2 cut(s) 52, 232
Sau96I GGNCC 2 cut(s) 64, 65
SchI GAGTC 1 cut(s) 455
SduI GDGCHC 1 cut(s) 68
SetI ASST 7 cut(s) 108, 118, 201, 316, 324, 336, 443
SfaNI GCATC 2 cut(s) 276, 289
SmiMI CAYNNNNRTG 1 cut(s) 41
Sse9I AATT 2 cut(s) 81, 93
SsiI CCGC 1 cut(s) 68
SspMI CTAG 1 cut(s) 366
TaaI ACNGT 3 cut(s) 216, 263, 416
TaiI ACGT 1 cut(s) 108
TaqI TCGA 1 cut(s) 284
TasI AATT 2 cut(s) 81, 93
TfiI GAWTC 3 cut(s) 11, 145, 358
Tru1I TTAA 2 cut(s) 140, 293
Tru9I TTAA 2 cut(s) 140, 293
TscAI CASTG 2 cut(s) 221, 268
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspRI CASTG 2 cut(s) 221, 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XmiI GTMKAC 1 cut(s) 160
XmnI GAANNNNTTC 1 cut(s) 390
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.