Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Reverse (-)

2116553 .. 2118617

Gene Structure 2065 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G04330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGGAGTCATCTTCTTCACTCCTTCATCACTCTTACCTCTCTTACCTTAATCCAAAATTTGGAAAAAGACCTTTGGTTTCTTATCCATTAATGCAGAGTTCGCGAAAATGCAAACAAACTCGCATTTGTTCTAACAAGATGTATGTTCCCGGCTTTGGAGAAGCTTCACCGGAGGCTAAGGCAGCGAAGCATCTTCATGACTTCTTTACTTACGTTGCAGTGAGGATAGTGTCTGCTCAGCTTGAGAGTTATAATCCTGAGGCTTATATGGAGTTGAGAGAATTTTTAGATACAAACTCTGTAAGTGACGGTGATAAATTCTGCGCCACTCTCATGCGTCGCTCTTCACGTCACATGAACTTAGCCCTTCGAATTTTAGAGGTACGGTCTGCTTATTGTAAAAACGATTTCGAATGGGATAATATGAAGCGCCTCGCCTTCAAGAACGTAGATGATTCCAACACAAGACTCATGCGCGAGTACGTCTTGGAGACTAGCCATGTCGAAACCGATTCTGATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

174

Amino Acids

20.2

Weight (kDa)

8.62

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcX	PF02341	60 - 164	3.5e-29	RbcX protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	252
AccB7I	CCANNNNNTGG	1 cut(s)	59
AccII	CGCG	2 cut(s)	103, 477
AcsI	RAATTY	4 cut(s)	56, 281, 317, 372
AfaI	GTAC	2 cut(s)	384, 482
AfiI	CCNNNNNNNGG	2 cut(s)	59, 155
AgsI	TTSAA	1 cut(s)	442
AjiI	CACGTC	1 cut(s)	350
AluBI	AGCT	2 cut(s)	164, 241
AluI	AGCT	2 cut(s)	164, 241
Alw26I	GTCTC	1 cut(s)	485
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	4 cut(s)	56, 281, 317, 372
AseI	ATTAAT	1 cut(s)	89
AspLEI	GCGC	3 cut(s)	326, 432, 477
AsuC2I	CCSGG	1 cut(s)	150
AsuHPI	GGTGA	2 cut(s)	159, 323
AsuII	TTCGAA	2 cut(s)	370, 411
AxyI	CCTNAGG	1 cut(s)	258
BbvI	GCAGC	1 cut(s)	194
BcnI	CCSGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	433
BisI	GCNGC	1 cut(s)	183
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	1 cut(s)	184
Bme1390I	CCNGG	1 cut(s)	150
BmgBI	CACGTC	1 cut(s)	350
BmrFI	CCNGG	1 cut(s)	150
BmsI	GCATC	1 cut(s)	199
Bpu10I	CCTNAGC	1 cut(s)	177
Bpu1102I	GCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	2 cut(s)	370, 411
BpuEI	CTTGAG	1 cut(s)	263
BpuMI	CCSGG	1 cut(s)	150
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 155
Bse21I	CCTNAGG	1 cut(s)	258
BseLI	CCNNNNNNNGG	2 cut(s)	59, 155
BseMII	CTCAG	2 cut(s)	249, 251
BseXI	GCAGC	1 cut(s)	194
Bsh1236I	CGCG	2 cut(s)	103, 477
BsiSI	CCGG	2 cut(s)	150, 170
BslI	CCNNNNNNNGG	2 cut(s)	59, 155
BsmAI	GTCTC	1 cut(s)	485
Bsp119I	TTCGAA	2 cut(s)	370, 411
Bsp1720I	GCTNAGC	1 cut(s)	237
Bsp68I	TCGCGA	1 cut(s)	103
BspCNI	CTCAG	2 cut(s)	250, 250
BspFNI	CGCG	2 cut(s)	103, 477
BspHI	TCATGA	1 cut(s)	196
BspQI	GCTCTTC	1 cut(s)	349
BspT104I	TTCGAA	2 cut(s)	370, 411
Bst4CI	ACNGT	2 cut(s)	311, 387
Bst6I	CTCTTC	1 cut(s)	349
BstBI	TTCGAA	2 cut(s)	370, 411
BstDEI	CTNAG	4 cut(s)	177, 237, 258, 361
BstFNI	CGCG	2 cut(s)	103, 477
BstH2I	RGCGCY	1 cut(s)	433
BstHHI	GCGC	3 cut(s)	326, 432, 477
BstMAI	GTCTC	1 cut(s)	485
BstMWI	GCNNNNNNNGC	2 cut(s)	100, 182
BstSCI	CCNGG	1 cut(s)	148
BstUI	CGCG	2 cut(s)	103, 477
BstV1I	GCAGC	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	258
BtrI	CACGTC	1 cut(s)	350
BtsI	GCAGTG	1 cut(s)	225
BtsIMutI	CAGTG	1 cut(s)	225
BtuMI	TCGCGA	1 cut(s)	103
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	3 cut(s)	326, 432, 477
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	383, 481
CviAII	CATG	5 cut(s)	197, 334, 355, 472, 500
CviJI	RGCY	7 cut(s)	153, 164, 176, 241, 263, 365, 498
CviKI_1	RGCY	7 cut(s)	153, 164, 176, 241, 263, 365, 498
CviQI	GTAC	2 cut(s)	383, 481
DdeI	CTNAG	4 cut(s)	177, 237, 258, 361
Eam1104I	CTCTTC	1 cut(s)	349
EarI	CTCTTC	1 cut(s)	349
Eco81I	CCTNAGG	1 cut(s)	258
FaeI	CATG	5 cut(s)	200, 337, 358, 475, 503
FatI	CATG	5 cut(s)	196, 333, 354, 471, 499
Fnu4HI	GCNGC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	183
FspBI	CTAG	1 cut(s)	495
GlaI	GCGC	3 cut(s)	325, 431, 476
GluI	GCNGC	1 cut(s)	183
HaeII	RGCGCY	1 cut(s)	433
HapII	CCGG	2 cut(s)	150, 170
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	3 cut(s)	326, 432, 477
Hin1II	CATG	5 cut(s)	200, 337, 358, 475, 503
Hin6I	GCGC	3 cut(s)	324, 430, 475
HinP1I	GCGC	3 cut(s)	324, 430, 475
HindIII	AAGCTT	1 cut(s)	162
HinfI	GANTC	4 cut(s)	5, 455, 468, 512
HpaII	CCGG	2 cut(s)	150, 170
HphI	GGTGA	2 cut(s)	159, 323
Hpy188I	TCNGA	1 cut(s)	517
Hpy188III	TCNNGA	4 cut(s)	102, 197, 257, 442
Hpy99I	CGWCG	1 cut(s)	342
HpyAV	CCTTC	3 cut(s)	32, 377, 448
HpyCH4III	ACNGT	2 cut(s)	311, 387
HpyCH4IV	ACGT	4 cut(s)	213, 349, 447, 483
HpyCH4V	TGCA	3 cut(s)	94, 111, 218
HpyF10VI	GCNNNNNNNGC	2 cut(s)	100, 182
HpyF3I	CTNAG	4 cut(s)	177, 237, 258, 361
HpySE526I	ACGT	4 cut(s)	213, 349, 447, 483
Hsp92II	CATG	5 cut(s)	200, 337, 358, 475, 503
HspAI	GCGC	3 cut(s)	324, 430, 475
LguI	GCTCTTC	1 cut(s)	349
LpnPI	CCDG	3 cut(s)	163, 183, 270
Lsp1109I	GCAGC	1 cut(s)	194
LweI	GCATC	1 cut(s)	199
MaeI	CTAG	1 cut(s)	495
MaeII	ACGT	4 cut(s)	213, 349, 447, 483
MaeIII	GTNAC	2 cut(s)	305, 350
MboII	GAAGA	4 cut(s)	3, 6, 185, 336
MluCI	AATT	4 cut(s)	56, 281, 317, 372
MlyI	GAGTC	2 cut(s)	14, 462
MmeI	TCCRAC	1 cut(s)	483
MnlI	CCTC	6 cut(s)	47, 166, 216, 253, 373, 443
MseI	TTAA	2 cut(s)	48, 89
MslI	CAYNNNNRTG	2 cut(s)	195, 332
MspI	CCGG	2 cut(s)	150, 170
MspR9I	CCNGG	1 cut(s)	150
MvnI	CGCG	2 cut(s)	103, 477
MwoI	GCNNNNNNNGC	2 cut(s)	100, 182
NciI	CCSGG	1 cut(s)	150
NlaIII	CATG	5 cut(s)	200, 337, 358, 475, 503
NmuCI	GTSAC	2 cut(s)	305, 350
NruI	TCGCGA	1 cut(s)	103
NspV	TTCGAA	2 cut(s)	370, 411
PagI	TCATGA	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	1 cut(s)	346
PfeI	GAWTC	2 cut(s)	455, 512
PflMI	CCANNNNNTGG	1 cut(s)	59
PkrI	GCNGC	1 cut(s)	184
PleI	GAGTC	2 cut(s)	13, 462
PpsI	GAGTC	2 cut(s)	13, 462
PshBI	ATTAAT	1 cut(s)	89
PsiI	TTATAA	1 cut(s)	252
RruI	TCGCGA	1 cut(s)	103
RsaI	GTAC	2 cut(s)	384, 482
RsaNI	GTAC	2 cut(s)	383, 481
RseI	CAYNNNNRTG	2 cut(s)	195, 332
SapI	GCTCTTC	1 cut(s)	349
SaqAI	TTAA	2 cut(s)	48, 89
SatI	GCNGC	1 cut(s)	183
SchI	GAGTC	2 cut(s)	14, 462
ScrFI	CCNGG	1 cut(s)	150
SfaNI	GCATC	1 cut(s)	199
SfuI	TTCGAA	2 cut(s)	370, 411
SmiMI	CAYNNNNRTG	2 cut(s)	195, 332
SmlI	CTYRAG	1 cut(s)	242
SmoI	CTYRAG	1 cut(s)	242
Sse9I	AATT	4 cut(s)	56, 281, 317, 372
SspMI	CTAG	1 cut(s)	495
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	2 cut(s)	311, 387
TaiI	ACGT	4 cut(s)	216, 352, 450, 486
TaqI	TCGA	3 cut(s)	370, 411, 504
TasI	AATT	4 cut(s)	56, 281, 317, 372
TfiI	GAWTC	2 cut(s)	455, 512
Tru1I	TTAA	2 cut(s)	48, 89
Tru9I	TTAA	2 cut(s)	48, 89
TscAI	CASTG	1 cut(s)	225
TseFI	GTSAC	2 cut(s)	305, 350
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	2 cut(s)	305, 350
TspDTI	ATGAA	4 cut(s)	14, 185, 371, 440
TspRI	CASTG	1 cut(s)	225
Van91I	CCANNNNNTGG	1 cut(s)	59
VspI	ATTAAT	1 cut(s)	89
XapI	RAATTY	4 cut(s)	56, 281, 317, 372
XspI	CTAG	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.