Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Reverse (-)

1428480 .. 1429669

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000031020

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAATCCTCGGCAGCACTTGTCCCATTCTCTCAGCTCCCATCTTTCTTCTCACAAAAACCCAACAACAGAATTAGCAAAGCTCATCCTTCTTGGCCATCCAAACCAAGAACTTCTCTGCCAACTCGCGTACACTGCCAAAAGATGTATGTCCCTGGATTTGGAGAAGCGTCCCCAGAAGCAAAGGCAGCCAATAACCTCCATAGTTTCTTCACTTATGTTGCGGTTAGGATTGTCACTGCACAGCTTGAGAGTTACAACAGAGAGGCATATGAAGAGCTAATGGAGTTTTTGAGTCGAAACTCGTTGAATGATGGAGACAAGTTCTGTGCCGATTTGATGCGAGAATCTTCCAGGCATCAGGCTCTAGCTTTGCGCATTTTAGAGGTTCGATCTGCATATTGTAAAAATGATTTTGAATGGGACAACCTAAAGCGACTGGCTTGCAAGATGGTGGATGAATCCAACACAAGACTCATGAGAGATTATGTCTTGGAAACAAGTCATGTGGACAATGAAGGAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

176

Amino Acids

20.09

Weight (kDa)

7.7

Isoelectric Point (pI)

40.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RbcX	PF02341	62 - 166	2.7e-30	RbcX protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	224
AcoI	YGGCCR	1 cut(s)	95
AfaI	GTAC	1 cut(s)	132
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	2 cut(s)	310, 419
AjnI	CCWGG	2 cut(s)	154, 353
AluBI	AGCT	5 cut(s)	37, 83, 247, 280, 371
AluI	AGCT	5 cut(s)	37, 83, 247, 280, 371
Alw26I	GTCTC	1 cut(s)	312
AoxI	GGCC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	14, 188
AspLEI	GCGC	1 cut(s)	378
BalI	TGGCCA	1 cut(s)	97
BbvI	GCAGC	2 cut(s)	26, 200
BccI	CCATC	4 cut(s)	49, 106, 308, 445
BcgI	CGANNNNNNTGC	2 cut(s)	426, 460
BciT130I	CCWGG	2 cut(s)	156, 355
BcoDI	GTCTC	1 cut(s)	312
BfaI	CTAG	1 cut(s)	368
BisI	GCNGC	2 cut(s)	15, 189
BlsI	GCNGC	2 cut(s)	16, 190
Bme1390I	CCNGG	2 cut(s)	156, 355
BmrFI	CCNGG	2 cut(s)	156, 355
BmsI	GCATC	2 cut(s)	330, 367
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	2 cut(s)	9, 154
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	156, 355
BseDI	CCNNGG	2 cut(s)	9, 154
BseGI	GGATG	3 cut(s)	85, 98, 463
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	444
BseXI	GCAGC	2 cut(s)	26, 200
BsgI	GTGCAG	1 cut(s)	225
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	97
BslFI	GGGAC	4 cut(s)	8, 137, 157, 437
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	312
BsmFI	GGGAC	4 cut(s)	8, 137, 157, 437
BsnI	GGCC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	392
BspACI	CCGC	1 cut(s)	224
BspANI	GGCC	1 cut(s)	97
BspCNI	CTCAG	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	129
BspHI	TCATGA	1 cut(s)	477
BspQI	GCTCTTC	1 cut(s)	270
BsrI	ACTGG	1 cut(s)	444
BssECI	CCNNGG	2 cut(s)	9, 154
BssMI	GATC	1 cut(s)	392
Bst2UI	CCWGG	2 cut(s)	156, 355
Bst6I	CTCTTC	1 cut(s)	270
BstC8I	GCNNGC	1 cut(s)	445
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	85, 98, 463
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	378
BstKTI	GATC	1 cut(s)	395
BstMAI	GTCTC	1 cut(s)	312
BstMBI	GATC	1 cut(s)	392
BstMWI	GCNNNNNNNGC	2 cut(s)	135, 188
BstNI	CCWGG	2 cut(s)	156, 355
BstSCI	CCNGG	2 cut(s)	154, 353
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	2 cut(s)	26, 200
BsuRI	GGCC	1 cut(s)	97
BtsCI	GGATG	3 cut(s)	85, 98, 463
BtsI	GCAGTG	2 cut(s)	133, 237
BtsIMutI	CAGTG	2 cut(s)	133, 237
Cac8I	GCNNGC	1 cut(s)	445
CciI	TCATGA	1 cut(s)	477
CfoI	GCGC	1 cut(s)	378
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	131
CspCI	CAANNNNNGTGG	2 cut(s)	489, 524
CviAII	CATG	2 cut(s)	478, 506
CviJI	RGCY	9 cut(s)	37, 83, 97, 191, 247, 280, 365, 371, 443
CviKI_1	RGCY	9 cut(s)	37, 83, 97, 191, 247, 280, 365, 371, 443
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	394
DpnII	GATC	1 cut(s)	392
EaeI	YGGCCR	1 cut(s)	95
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
EcoRII	CCWGG	2 cut(s)	154, 353
FaeI	CATG	2 cut(s)	481, 509
FaiI	YATR	9 cut(s)	150, 204, 219, 271, 273, 400, 479, 489, 507
FaqI	GGGAC	4 cut(s)	8, 137, 157, 437
FatI	CATG	2 cut(s)	477, 505
FauNDI	CATATG	1 cut(s)	271
Fnu4HI	GCNGC	2 cut(s)	15, 189
FokI	GGATG	3 cut(s)	72, 85, 470
Fsp4HI	GCNGC	2 cut(s)	15, 189
FspBI	CTAG	1 cut(s)	368
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	1 cut(s)	377
GluI	GCNGC	2 cut(s)	15, 189
HaeIII	GGCC	1 cut(s)	97
HgaI	GACGC	1 cut(s)	159
HhaI	GCGC	1 cut(s)	378
Hin1II	CATG	2 cut(s)	481, 509
Hin6I	GCGC	1 cut(s)	376
HinP1I	GCGC	1 cut(s)	376
HinfI	GANTC	5 cut(s)	5, 295, 347, 461, 474
Hpy166II	GTNNAC	2 cut(s)	133, 511
Hpy188III	TCNNGA	1 cut(s)	478
Hpy8I	GTNNAC	2 cut(s)	133, 511
HpyAV	CCTTC	2 cut(s)	99, 512
HpyCH4V	TGCA	3 cut(s)	242, 398, 447
HpyF10VI	GCNNNNNNNGC	2 cut(s)	135, 188
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	481, 509
HspAI	GCGC	1 cut(s)	376
Kzo9I	GATC	1 cut(s)	392
LguI	GCTCTTC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	7 cut(s)	141, 168, 189, 340, 347, 367, 425
Lsp1109I	GCAGC	2 cut(s)	26, 200
LweI	GCATC	2 cut(s)	330, 367
MaeI	CTAG	1 cut(s)	368
MaeIII	GTNAC	2 cut(s)	235, 254
MalI	GATC	1 cut(s)	394
MboI	GATC	1 cut(s)	392
MboII	GAAGA	4 cut(s)	40, 202, 287, 342
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	2 cut(s)	304, 468
MmeI	TCCRAC	1 cut(s)	489
MnlI	CCTC	4 cut(s)	19, 209, 259, 379
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	2 cut(s)	156, 355
MvaI	CCWGG	2 cut(s)	156, 355
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	2 cut(s)	135, 188
NdeI	CATATG	1 cut(s)	271
NdeII	GATC	1 cut(s)	392
NlaIII	CATG	2 cut(s)	481, 509
NmuCI	GTSAC	1 cut(s)	235
NsbI	TGCGCA	1 cut(s)	377
PagI	TCATGA	1 cut(s)	477
PciSI	GCTCTTC	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	5, 347, 461
PkrI	GCNGC	2 cut(s)	16, 190
PleI	GAGTC	2 cut(s)	303, 468
PpsI	GAGTC	2 cut(s)	303, 468
Psp6I	CCWGG	2 cut(s)	154, 353
PspGI	CCWGG	2 cut(s)	154, 353
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	270
SatI	GCNGC	2 cut(s)	15, 189
Sau3AI	GATC	1 cut(s)	392
SchI	GAGTC	2 cut(s)	304, 468
ScrFI	CCNGG	2 cut(s)	156, 355
SetI	ASST	8 cut(s)	39, 85, 201, 249, 282, 373, 390, 432
SfaNI	GCATC	2 cut(s)	330, 367
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	224
SspMI	CTAG	1 cut(s)	368
StyD4I	CCNGG	2 cut(s)	154, 353
TaqI	TCGA	2 cut(s)	298, 391
TasI	AATT	1 cut(s)	72
TfiI	GAWTC	3 cut(s)	5, 347, 461
TscAI	CASTG	2 cut(s)	140, 244
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	2 cut(s)	14, 188
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	288, 474
TspRI	CASTG	2 cut(s)	140, 244
XspI	CTAG	1 cut(s)	368

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.