Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Forward (+)

62728676 .. 62741326

Gene Structure 12651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG457000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 390 bp

ATGGAATCCTCTGCAGCACTTGTCCCATTCTCTCAGCTCCCATCTTTCTTCTCACAAAAACCCAACAACAGAATTAGCAAAGCTCATCCTACTTGGCCATCCAAACCCAGAACCTCTCTCCCAACTCACACACACTGCCAAAAGATGTATGTCCCTGGTGGGTGCTTCAGATTTGGAGAAGCGTCACCAGAAGCAAAAGCGGCCAATAATCTCCATAGTTTCTTCACTTACATTGCTGTTAGGATTGTCACTGCACAACTTGAGGGTGTGACTTTTGTGTATGTTCGATCTGCATATTGTAAAAATGATTTTGAATGGGACAACTTAAAGCGACTGGCTTGCAAGAAATCAATGAGACTCTCACATGGATGCTCTGCCCCAGTCAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

129

Amino Acids

14.47

Weight (kDa)

9.63

Isoelectric Point (pI)

37.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	200
AcoI	YGGCCR	2 cut(s)	95, 201
AcuI	CTGAAG	1 cut(s)	151
AgsI	TTSAA	1 cut(s)	314
AjnI	CCWGG	1 cut(s)	154
AluBI	AGCT	2 cut(s)	37, 83
AluI	AGCT	2 cut(s)	37, 83
Alw26I	GTCTC	1 cut(s)	349
AoxI	GGCC	2 cut(s)	95, 201
ApeKI	GCWGC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	177
BalI	TGGCCA	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	2 cut(s)	49, 106
BcgI	CGANNNNNNTGC	2 cut(s)	321, 355
BciT130I	CCWGG	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	349
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	15, 201
BlsI	GCNGC	2 cut(s)	16, 202
Bme1390I	CCNGG	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	156
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	154
Bse1I	ACTGG	2 cut(s)	339, 380
Bse3DI	GCAATG	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	85, 98, 374
BseMI	GCAATG	1 cut(s)	231
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	2 cut(s)	339, 380
BseXI	GCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	237
BshFI	GGCC	2 cut(s)	97, 203
BslFI	GGGAC	3 cut(s)	8, 137, 332
BsmAI	GTCTC	1 cut(s)	349
BsmFI	GGGAC	3 cut(s)	8, 137, 332
BsnI	GGCC	2 cut(s)	97, 203
Bsp143I	GATC	1 cut(s)	287
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	2 cut(s)	97, 203
BspCNI	CTCAG	1 cut(s)	46
BspMAI	CTGCAG	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	231
BsrI	ACTGG	2 cut(s)	339, 380
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	287
Bst2UI	CCWGG	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	340
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	85, 98, 374
BstKTI	GATC	1 cut(s)	290
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	287
BstMWI	GCNNNNNNNGC	1 cut(s)	200
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	97, 203
BtsCI	GGATG	3 cut(s)	85, 98, 374
BtsI	GCAGTG	2 cut(s)	133, 249
BtsIMutI	CAGTG	2 cut(s)	133, 249
Cac8I	GCNNGC	1 cut(s)	340
CseI	GACGC	1 cut(s)	171
CviAII	CATG	1 cut(s)	365
CviJI	RGCY	5 cut(s)	37, 83, 97, 203, 338
CviKI_1	RGCY	5 cut(s)	37, 83, 97, 203, 338
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	289
DpnII	GATC	1 cut(s)	287
EaeI	YGGCCR	2 cut(s)	95, 201
Eco57I	CTGAAG	1 cut(s)	151
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	1 cut(s)	368
FaiI	YATR	5 cut(s)	150, 216, 282, 295, 366
FaqI	GGGAC	3 cut(s)	8, 137, 332
FatI	CATG	1 cut(s)	364
Fnu4HI	GCNGC	2 cut(s)	15, 201
FokI	GGATG	3 cut(s)	72, 85, 381
Fsp4HI	GCNGC	2 cut(s)	15, 201
GluI	GCNGC	2 cut(s)	15, 201
HaeIII	GGCC	2 cut(s)	97, 203
HgaI	GACGC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	368
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	2 cut(s)	5, 357
HphI	GGTGA	1 cut(s)	177
Hpy166II	GTNNAC	1 cut(s)	385
Hpy188I	TCNGA	1 cut(s)	170
Hpy8I	GTNNAC	1 cut(s)	385
HpyCH4V	TGCA	4 cut(s)	14, 254, 293, 342
HpyF10VI	GCNNNNNNNGC	1 cut(s)	200
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	368
Kzo9I	GATC	1 cut(s)	287
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	5 cut(s)	121, 141, 168, 201, 320
Lsp1109I	GCAGC	1 cut(s)	26
LweI	GCATC	1 cut(s)	359
MaeIII	GTNAC	3 cut(s)	183, 247, 268
MalI	GATC	1 cut(s)	289
MboI	GATC	1 cut(s)	287
MboII	GAAGA	2 cut(s)	40, 214
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	97
MlyI	GAGTC	1 cut(s)	351
MnlI	CCTC	3 cut(s)	19, 124, 256
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	1 cut(s)	326
MslI	CAYNNNNRTG	1 cut(s)	367
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	200
NdeII	GATC	1 cut(s)	287
NlaIII	CATG	1 cut(s)	368
NmuCI	GTSAC	3 cut(s)	183, 247, 268
PfeI	GAWTC	1 cut(s)	5
PkrI	GCNGC	2 cut(s)	16, 202
PleI	GAGTC	1 cut(s)	351
PpsI	GAGTC	1 cut(s)	351
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	16
RseI	CAYNNNNRTG	1 cut(s)	367
SaqAI	TTAA	1 cut(s)	326
SatI	GCNGC	2 cut(s)	15, 201
Sau3AI	GATC	1 cut(s)	287
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	3 cut(s)	39, 85, 116
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	1 cut(s)	12
SmiMI	CAYNNNNRTG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	200
StyD4I	CCNGG	1 cut(s)	154
TaqI	TCGA	1 cut(s)	286
TasI	AATT	1 cut(s)	72
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	5
Tru1I	TTAA	1 cut(s)	326
Tru9I	TTAA	1 cut(s)	326
TscAI	CASTG	2 cut(s)	140, 256
TseFI	GTSAC	3 cut(s)	183, 247, 268
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	3 cut(s)	183, 247, 268
TspRI	CASTG	2 cut(s)	140, 256

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.