Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Reverse (-)

758515 .. 760376

Gene Structure 1862 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G016000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGAAGCCTCTGCAACAATGCTCCCACTCTCTCAGGTCCCTCGTTTCTTCCCACATAAACCCAACAGAAGCAAATTAGCTTGTCCTCCTTGTGGCCCATCCAAACCAAGAAGAACCTCTCTGCCCAGTCGTCTACACTGCCAAAAGATGTATGTCCCTGGATTTGGAGAAGCATCGCCAGAAGCAAAAGCAGCCAACAACCTCCATAGTTTCTTCACTTACATTGCAGTTAGAATTGTCACTGCACAGCTTGAGAGTTACAACCCCGAGGCATATGAAGAGATGATGGAATTTTTGAGTAGAAACTCGTTGAACGATGGAGACCAATTCTGTGCCAACTTGATGCGTGAATCTTCCAGGCATAACGCTCTTGCTTTGCGCATCTTAGAGGTTCGGTCGGCATATTGTAAAAATGATTTCGAGTGGGACAACTTAAAGCGATTAGCTTTCAAGATGGTGGATGAATCCAACACGAGACTCATGAGAGATTATGTCTTAGAAATAAGTCACGTGGAAGGTGAAGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

177

Amino Acids

20.14

Weight (kDa)

8.28

Isoelectric Point (pI)

48.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	380
AccI	GTMKAC	1 cut(s)	133
AcsI	RAATTY	1 cut(s)	290
AcvI	CACGTG	1 cut(s)	511
AfiI	CCNNNNNNNGG	2 cut(s)	92, 164
AgsI	TTSAA	2 cut(s)	313, 451
AjnI	CCWGG	2 cut(s)	157, 356
AluBI	AGCT	3 cut(s)	80, 250, 446
AluI	AGCT	3 cut(s)	80, 250, 446
Alw26I	GTCTC	2 cut(s)	315, 469
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	191
ApoI	RAATTY	1 cut(s)	290
AspLEI	GCGC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	37, 95
AsuHPI	GGTGA	1 cut(s)	530
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	1 cut(s)	37
BauI	CACGAG	1 cut(s)	472
BbrPI	CACGTG	1 cut(s)	511
BbvI	GCAGC	1 cut(s)	203
BccI	CCATC	4 cut(s)	106, 280, 311, 448
BciT130I	CCWGG	2 cut(s)	159, 358
BcoDI	GTCTC	2 cut(s)	315, 469
BisI	GCNGC	1 cut(s)	192
BlsI	GCNGC	1 cut(s)	193
Bme1390I	CCNGG	2 cut(s)	159, 358
Bme18I	GGWCC	1 cut(s)	37
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	2 cut(s)	37, 95
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	2 cut(s)	159, 358
BmrI	ACTGGG	1 cut(s)	120
BmsI	GCATC	3 cut(s)	182, 333, 390
BmuI	ACTGGG	1 cut(s)	120
BpuEI	CTTGAG	1 cut(s)	272
BsaAI	YACGTR	1 cut(s)	511
BsaI	GGTCTC	1 cut(s)	315
BsaJI	CCNNGG	2 cut(s)	157, 267
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 164
Bse1I	ACTGG	1 cut(s)	126
Bse3DI	GCAATG	1 cut(s)	222
BseBI	CCWGG	2 cut(s)	159, 358
BseDI	CCNNGG	2 cut(s)	157, 267
BseGI	GGATG	2 cut(s)	98, 466
BseLI	CCNNNNNNNGG	2 cut(s)	92, 164
BseMI	GCAATG	1 cut(s)	222
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	126
BseXI	GCAGC	1 cut(s)	203
BsgI	GTGCAG	1 cut(s)	228
Bsh1285I	CGRYCG	1 cut(s)	398
BshFI	GGCC	1 cut(s)	96
BsiEI	CGRYCG	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	266
BslFI	GGGAC	3 cut(s)	23, 140, 440
BslI	CCNNNNNNNGG	2 cut(s)	92, 164
BsmAI	GTCTC	2 cut(s)	315, 469
BsmFI	GGGAC	3 cut(s)	23, 140, 440
BsnI	GGCC	1 cut(s)	96
Bso31I	GGTCTC	1 cut(s)	315
BsoBI	CYCGRG	1 cut(s)	266
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	39
BspTNI	GGTCTC	1 cut(s)	315
BsrDI	GCAATG	1 cut(s)	222
BsrI	ACTGG	1 cut(s)	126
BssECI	CCNNGG	2 cut(s)	157, 267
BssSI	CACGAG	1 cut(s)	472
Bst2BI	CACGAG	1 cut(s)	472
Bst2UI	CCWGG	2 cut(s)	159, 358
Bst6I	CTCTTC	1 cut(s)	273
BstBAI	YACGTR	1 cut(s)	511
BstDEI	CTNAG	3 cut(s)	33, 385, 496
BstF5I	GGATG	2 cut(s)	98, 466
BstHHI	GCGC	1 cut(s)	381
BstMAI	GTCTC	2 cut(s)	315, 469
BstMCI	CGRYCG	1 cut(s)	398
BstMWI	GCNNNNNNNGC	1 cut(s)	191
BstNI	CCWGG	2 cut(s)	159, 358
BstSCI	CCNGG	2 cut(s)	157, 356
BstV1I	GCAGC	1 cut(s)	203
BsuRI	GGCC	1 cut(s)	96
BtgZI	GCGATG	1 cut(s)	159
BtsCI	GGATG	2 cut(s)	98, 466
BtsI	GCAGTG	2 cut(s)	136, 240
BtsIMutI	CAGTG	2 cut(s)	136, 240
CciI	TCATGA	1 cut(s)	480
CfoI	GCGC	1 cut(s)	381
Cfr13I	GGNCC	2 cut(s)	37, 95
CviAII	CATG	1 cut(s)	481
CviJI	RGCY	6 cut(s)	8, 80, 96, 194, 250, 446
CviKI_1	RGCY	6 cut(s)	8, 80, 96, 194, 250, 446
DdeI	CTNAG	3 cut(s)	33, 385, 496
Eam1104I	CTCTTC	1 cut(s)	273
EarI	CTCTTC	1 cut(s)	273
Eco31I	GGTCTC	1 cut(s)	315
Eco47I	GGWCC	1 cut(s)	37
Eco72I	CACGTG	1 cut(s)	511
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	157, 356
FaeI	CATG	1 cut(s)	484
FaiI	YATR	9 cut(s)	57, 153, 207, 274, 276, 363, 403, 482, 492
FaqI	GGGAC	3 cut(s)	23, 140, 440
FatI	CATG	1 cut(s)	480
FauNDI	CATATG	1 cut(s)	274
FblI	GTMKAC	1 cut(s)	133
Fnu4HI	GCNGC	1 cut(s)	192
FokI	GGATG	2 cut(s)	85, 473
Fsp4HI	GCNGC	1 cut(s)	192
FspI	TGCGCA	1 cut(s)	380
GlaI	GCGC	1 cut(s)	380
GluI	GCNGC	1 cut(s)	192
HaeIII	GGCC	1 cut(s)	96
HhaI	GCGC	1 cut(s)	381
Hin1II	CATG	1 cut(s)	484
Hin6I	GCGC	1 cut(s)	379
HinP1I	GCGC	1 cut(s)	379
HinfI	GANTC	3 cut(s)	350, 464, 477
HphI	GGTGA	1 cut(s)	530
Hpy166II	GTNNAC	1 cut(s)	134
Hpy188III	TCNNGA	2 cut(s)	451, 481
Hpy8I	GTNNAC	1 cut(s)	134
HpyAV	CCTTC	2 cut(s)	509, 515
HpyCH4IV	ACGT	1 cut(s)	510
HpyCH4V	TGCA	3 cut(s)	14, 227, 245
HpyF10VI	GCNNNNNNNGC	1 cut(s)	191
HpyF3I	CTNAG	3 cut(s)	33, 385, 496
HpySE526I	ACGT	1 cut(s)	510
Hsp92II	CATG	1 cut(s)	484
HspAI	GCGC	1 cut(s)	379
LmnI	GCTCC	1 cut(s)	27
LpnPI	CCDG	7 cut(s)	20, 139, 144, 171, 192, 343, 370
Lsp1109I	GCAGC	1 cut(s)	203
LweI	GCATC	3 cut(s)	182, 333, 390
MaeII	ACGT	1 cut(s)	510
MaeIII	GTNAC	3 cut(s)	238, 257, 506
MboII	GAAGA	5 cut(s)	40, 123, 205, 290, 345
MluCI	AATT	4 cut(s)	74, 234, 290, 326
MlyI	GAGTC	1 cut(s)	471
MmeI	TCCRAC	1 cut(s)	492
MnlI	CCTC	7 cut(s)	19, 51, 96, 127, 212, 262, 382
MseI	TTAA	1 cut(s)	434
MspR9I	CCNGG	2 cut(s)	159, 358
MvaI	CCWGG	2 cut(s)	159, 358
MwoI	GCNNNNNNNGC	1 cut(s)	191
NdeI	CATATG	1 cut(s)	274
NlaIII	CATG	1 cut(s)	484
NlaIV	GGNNCC	1 cut(s)	39
NmuCI	GTSAC	2 cut(s)	238, 506
NsbI	TGCGCA	1 cut(s)	380
PagI	TCATGA	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	350, 464
PkrI	GCNGC	1 cut(s)	193
PleI	GAGTC	1 cut(s)	471
PmaCI	CACGTG	1 cut(s)	511
PmlI	CACGTG	1 cut(s)	511
PpsI	GAGTC	1 cut(s)	471
Ppu21I	YACGTR	1 cut(s)	511
PpuMI	RGGWCCY	1 cut(s)	37
Psp5II	RGGWCCY	1 cut(s)	37
Psp6I	CCWGG	2 cut(s)	157, 356
PspCI	CACGTG	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	157, 356
PspN4I	GGNNCC	1 cut(s)	39
PspPI	GGNCC	2 cut(s)	37, 95
PspPPI	RGGWCCY	1 cut(s)	37
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	1 cut(s)	192
Sau96I	GGNCC	2 cut(s)	37, 95
SchI	GAGTC	1 cut(s)	471
ScrFI	CCNGG	2 cut(s)	159, 358
SetI	ASST	9 cut(s)	39, 82, 119, 204, 252, 393, 448, 513, 520
SfaNI	GCATC	3 cut(s)	182, 333, 390
SinI	GGWCC	1 cut(s)	37
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	74, 234, 290, 326
StyD4I	CCNGG	2 cut(s)	157, 356
TaiI	ACGT	1 cut(s)	513
TaqI	TCGA	1 cut(s)	420
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	4 cut(s)	74, 234, 290, 326
TfiI	GAWTC	2 cut(s)	350, 464
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TscAI	CASTG	2 cut(s)	143, 247
TseFI	GTSAC	2 cut(s)	238, 506
TseI	GCWGC	1 cut(s)	191
Tsp45I	GTSAC	2 cut(s)	238, 506
TspDTI	ATGAA	2 cut(s)	291, 477
TspRI	CASTG	2 cut(s)	143, 247
VpaK11BI	GGWCC	1 cut(s)	37
XapI	RAATTY	1 cut(s)	290
XmiI	GTMKAC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.