Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Forward (+)

61826338 .. 61827577

Gene Structure 1240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ21238

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGGAATCCTCTGCAGCACTTGTCCCATTCTCTCAGCTCCCATCTTTCTTCTCACAAAAACCCAACAACAGAATTAGCAAAGCTCATCCTACTTGGCCATCCAAACCCAGAACCTCTCTCCCAACTCACACACACTGCCAAAAGATGTATGTCCCTGGATTTGGAGAAGCGTCACCAGAAGCAAAAGCGGCCAATAATCTCCATAGTTTCTTCACTTACATTGCTGTTAGGATTGTCACTGCACAACTTGAGGGTGTGACTTTTGTGTATGTTCGATCTGCATATTGTAAAAATGATTTTGAATGGGACAACTTAAAGCGACTGGCTTGCAAGATGGTGGATGAATCCAACAAAAGATTCATGAGAGATTATGTTGGAAACAAGTCATGTGGACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

132

Amino Acids

14.98

Weight (kDa)

9.42

Isoelectric Point (pI)

44.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	188
AcoI	YGGCCR	2 cut(s)	95, 189
AfiI	CCNNNNNNNGG	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	154
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AluBI	AGCT	2 cut(s)	37, 83
AluI	AGCT	2 cut(s)	37, 83
AoxI	GGCC	2 cut(s)	95, 189
ApeKI	GCWGC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	165
BalI	TGGCCA	1 cut(s)	97
BbvI	GCAGC	1 cut(s)	26
BccI	CCATC	3 cut(s)	49, 106, 328
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BciT130I	CCWGG	1 cut(s)	156
BfmI	CTRYAG	1 cut(s)	12
BisI	GCNGC	2 cut(s)	15, 189
BlsI	GCNGC	2 cut(s)	16, 190
Bme1390I	CCNGG	1 cut(s)	156
BmrFI	CCNGG	1 cut(s)	156
BpuEI	CTTGAG	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	154
Bsc4I	CCNNNNNNNGG	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	327
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	154
BseGI	GGATG	3 cut(s)	85, 98, 346
BseLI	CCNNNNNNNGG	1 cut(s)	161
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	47
BseNI	ACTGG	1 cut(s)	327
BseXI	GCAGC	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	225
BshFI	GGCC	2 cut(s)	97, 191
BslFI	GGGAC	3 cut(s)	8, 137, 320
BslI	CCNNNNNNNGG	1 cut(s)	161
BsmFI	GGGAC	3 cut(s)	8, 137, 320
BsnI	GGCC	2 cut(s)	97, 191
Bsp143I	GATC	1 cut(s)	275
BspACI	CCGC	1 cut(s)	188
BspANI	GGCC	2 cut(s)	97, 191
BspCNI	CTCAG	1 cut(s)	46
BspHI	TCATGA	1 cut(s)	360
BspMAI	CTGCAG	1 cut(s)	16
BsrDI	GCAATG	1 cut(s)	219
BsrI	ACTGG	1 cut(s)	327
BssECI	CCNNGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	328
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	85, 98, 346
BstKTI	GATC	1 cut(s)	278
BstMBI	GATC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstNI	CCWGG	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	154
BstSFI	CTRYAG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	26
BsuRI	GGCC	2 cut(s)	97, 191
BtsCI	GGATG	3 cut(s)	85, 98, 346
BtsI	GCAGTG	2 cut(s)	133, 237
BtsIMutI	CAGTG	2 cut(s)	133, 237
Cac8I	GCNNGC	1 cut(s)	328
CciI	TCATGA	1 cut(s)	360
CseI	GACGC	1 cut(s)	159
CspCI	CAANNNNNGTGG	1 cut(s)	370
CviAII	CATG	2 cut(s)	361, 387
CviJI	RGCY	5 cut(s)	37, 83, 97, 191, 326
CviKI_1	RGCY	5 cut(s)	37, 83, 97, 191, 326
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	277
DpnII	GATC	1 cut(s)	275
EaeI	YGGCCR	2 cut(s)	95, 189
EcoRII	CCWGG	1 cut(s)	154
FaeI	CATG	2 cut(s)	364, 390
FaiI	YATR	7 cut(s)	150, 204, 270, 283, 362, 372, 388
FaqI	GGGAC	3 cut(s)	8, 137, 320
FatI	CATG	2 cut(s)	360, 386
Fnu4HI	GCNGC	2 cut(s)	15, 189
FokI	GGATG	3 cut(s)	72, 85, 353
Fsp4HI	GCNGC	2 cut(s)	15, 189
GluI	GCNGC	2 cut(s)	15, 189
HaeIII	GGCC	2 cut(s)	97, 191
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	364, 390
HinfI	GANTC	3 cut(s)	5, 344, 357
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	1 cut(s)	392
Hpy188III	TCNNGA	1 cut(s)	361
Hpy8I	GTNNAC	1 cut(s)	392
HpyCH4V	TGCA	4 cut(s)	14, 242, 281, 330
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	2 cut(s)	364, 390
Kzo9I	GATC	1 cut(s)	275
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	5 cut(s)	121, 141, 168, 189, 308
Lsp1109I	GCAGC	1 cut(s)	26
MaeIII	GTNAC	3 cut(s)	171, 235, 256
MalI	GATC	1 cut(s)	277
MboI	GATC	1 cut(s)	275
MboII	GAAGA	2 cut(s)	40, 202
MlsI	TGGCCA	1 cut(s)	97
MluCI	AATT	1 cut(s)	72
MluNI	TGGCCA	1 cut(s)	97
MmeI	TCCRAC	2 cut(s)	355, 372
MnlI	CCTC	3 cut(s)	19, 124, 244
Mox20I	TGGCCA	1 cut(s)	97
MscI	TGGCCA	1 cut(s)	97
MseI	TTAA	1 cut(s)	314
Msp20I	TGGCCA	1 cut(s)	97
MspR9I	CCNGG	1 cut(s)	156
MvaI	CCWGG	1 cut(s)	156
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	1 cut(s)	275
NlaIII	CATG	2 cut(s)	364, 390
NmuCI	GTSAC	3 cut(s)	171, 235, 256
PagI	TCATGA	1 cut(s)	360
PfeI	GAWTC	3 cut(s)	5, 344, 357
PkrI	GCNGC	2 cut(s)	16, 190
Psp6I	CCWGG	1 cut(s)	154
PspGI	CCWGG	1 cut(s)	154
PstI	CTGCAG	1 cut(s)	16
SaqAI	TTAA	1 cut(s)	314
SatI	GCNGC	2 cut(s)	15, 189
Sau3AI	GATC	1 cut(s)	275
ScrFI	CCNGG	1 cut(s)	156
SetI	ASST	3 cut(s)	39, 85, 116
SfcI	CTRYAG	1 cut(s)	12
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
Sse9I	AATT	1 cut(s)	72
SsiI	CCGC	1 cut(s)	188
StyD4I	CCNGG	1 cut(s)	154
TaqI	TCGA	1 cut(s)	274
TasI	AATT	1 cut(s)	72
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	3 cut(s)	5, 344, 357
Tru1I	TTAA	1 cut(s)	314
Tru9I	TTAA	1 cut(s)	314
TscAI	CASTG	2 cut(s)	140, 244
TseFI	GTSAC	3 cut(s)	171, 235, 256
TseI	GCWGC	1 cut(s)	14
Tsp45I	GTSAC	3 cut(s)	171, 235, 256
TspDTI	ATGAA	2 cut(s)	349, 357
TspRI	CASTG	2 cut(s)	140, 244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.