Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0011270

Physical Location & Seq

Genomic Coordinates Forward (+)

28496429 .. 28498090

Gene Structure 1662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGGAATCCTCTGCGTCAATACTCCCACTCTCTCAGCTCCCTTCTGTTTTCCCACAAAAACCCAAAAGAAGCAATTTACCTTACAATCCTTCTTGGCTATCCAATTCCAAACCAAGAGCCTCTCGTCCCCCTCGCATGCACTGCCACAAGATGTATGTCCCTGGATTTGGAGAAGCGTCGCCGGAAGCAAAGGCGGCCAACAACCTCCACAGTTTCTTCACTTATGTTGCAGTTAGTATTGTCTGTGCTCAGCTTGAGAGTTACAACACGGAGGCATACGAAGAGCTGATGGAATTTCTGAGTAGGAACTCGTTGAATGATGGAGACCAATTCTGTGCCAATCTGATGAGAGAATCTTCCAGGCATAAGGGTCTAGCTTTGCGCATCCTAGAGGTTCGATCTGCATACTGTAAAAATGATTTCGAGTGGGACAACTTGCAGCGATTAGCCTTCAAGATGGTGGATGAATCCAATACGAGGCTCATGAGAGATTATGTCCTAGAAATAAGTCATGTGGAAGGTGAACAGGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006457 GO:0006950 GO:0006970 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0031976 GO:0031984 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044183 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0061077 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RcbX

Protein Analysis

179

Amino Acids

20.44

Weight (kDa)

6.52

Isoelectric Point (pI)

58.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G04330
malus_domestica	MD05G1351600.v1.1 MD10G1325900.v1.1
prunus_persica	Prupe.4G016000_v2.0.a1 Prupe.4G016000_v2.0.a1
pyrus_communis	pycom05g31870 pycom10g27580
rosa_chinensis	RchiOBHm_Chr5g0002331 RchiOBHm_Chr5g0002341 RchiOBHm_Chr7g0236991
rosa_laevigata	RLG00000031020
rosa_multiflora	Rmu_sc0006137.1_g000007
rosa_roxburghii	Rroxscaffold_1G00073540
rosa_rugosa	Rorug04G0395300
rosa_samantha	Rh5AG018100 Rh5BG020800 Rh5CG020000 Rh5DG018800 Rh7AG457000
rosa_wichuraiana	Rw5G001700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	383
AciI	CCGC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	293
AfiI	CCNNNNNNNGG	2 cut(s)	167, 477
AgsI	TTSAA	2 cut(s)	316, 454
AjnI	CCWGG	2 cut(s)	160, 359
AluBI	AGCT	4 cut(s)	37, 253, 286, 377
AluI	AGCT	4 cut(s)	37, 253, 286, 377
Alw21I	GWGCWC	1 cut(s)	250
Alw26I	GTCTC	1 cut(s)	318
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	1 cut(s)	439
ApoI	RAATTY	1 cut(s)	293
AspLEI	GCGC	1 cut(s)	384
AsuHPI	GGTGA	1 cut(s)	533
Bbv12I	GWGCWC	1 cut(s)	250
BbvI	GCAGC	1 cut(s)	451
BccI	CCATC	3 cut(s)	283, 314, 451
BciT130I	CCWGG	2 cut(s)	162, 361
BcoDI	GTCTC	1 cut(s)	318
BfaI	CTAG	3 cut(s)	374, 389, 500
BisI	GCNGC	2 cut(s)	195, 440
BlpI	GCTNAGC	1 cut(s)	249
BlsI	GCNGC	2 cut(s)	196, 441
Bme1390I	CCNGG	2 cut(s)	162, 361
BmrFI	CCNGG	2 cut(s)	162, 361
BmsI	GCATC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	249
BpuEI	CTTGAG	1 cut(s)	275
BsaI	GGTCTC	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 477
BseBI	CCWGG	2 cut(s)	162, 361
BseDI	CCNNGG	1 cut(s)	160
BseGI	GGATG	2 cut(s)	384, 469
BseLI	CCNNNNNNNGG	2 cut(s)	167, 477
BseMII	CTCAG	3 cut(s)	47, 263, 290
BseXI	GCAGC	1 cut(s)	451
BshFI	GGCC	1 cut(s)	197
BsiHKAI	GWGCWC	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	3 cut(s)	111, 143, 443
BslI	CCNNNNNNNGG	2 cut(s)	167, 477
BsmAI	GTCTC	1 cut(s)	318
BsmFI	GGGAC	3 cut(s)	111, 143, 443
BsnI	GGCC	1 cut(s)	197
Bso31I	GGTCTC	1 cut(s)	318
Bsp1286I	GDGCHC	1 cut(s)	250
Bsp143I	GATC	1 cut(s)	398
Bsp1720I	GCTNAGC	1 cut(s)	249
BspACI	CCGC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	197
BspCNI	CTCAG	3 cut(s)	46, 262, 291
BspHI	TCATGA	1 cut(s)	483
BspQI	GCTCTTC	1 cut(s)	276
BspTNI	GGTCTC	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	160
BssMI	GATC	1 cut(s)	398
Bst2UI	CCWGG	2 cut(s)	162, 361
Bst4CI	ACNGT	2 cut(s)	212, 410
Bst6I	CTCTTC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	137
BstDEI	CTNAG	3 cut(s)	33, 249, 299
BstF5I	GGATG	2 cut(s)	384, 469
BstHHI	GCGC	1 cut(s)	384
BstKTI	GATC	1 cut(s)	401
BstMAI	GTCTC	1 cut(s)	318
BstMBI	GATC	1 cut(s)	398
BstMWI	GCNNNNNNNGC	2 cut(s)	141, 194
BstNI	CCWGG	2 cut(s)	162, 361
BstNSI	RCATGY	1 cut(s)	139
BstSCI	CCNGG	2 cut(s)	160, 359
BstV1I	GCAGC	1 cut(s)	451
BsuRI	GGCC	1 cut(s)	197
BtsCI	GGATG	2 cut(s)	384, 469
BtsI	GCAGTG	1 cut(s)	139
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	137
CciI	TCATGA	1 cut(s)	483
CfoI	GCGC	1 cut(s)	384
CseI	GACGC	2 cut(s)	3, 165
CviAII	CATG	3 cut(s)	136, 484, 512
CviJI	RGCY	9 cut(s)	37, 97, 119, 197, 253, 286, 377, 449, 481
CviKI_1	RGCY	9 cut(s)	37, 97, 119, 197, 253, 286, 377, 449, 481
DdeI	CTNAG	3 cut(s)	33, 249, 299
DpnI	GATC	1 cut(s)	400
DpnII	GATC	1 cut(s)	398
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	1 cut(s)	276
EarI	CTCTTC	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	318
EcoRII	CCWGG	2 cut(s)	160, 359
FaeI	CATG	3 cut(s)	139, 487, 515
FaiI	YATR	9 cut(s)	137, 156, 225, 277, 366, 406, 485, 495, 513
FaqI	GGGAC	3 cut(s)	111, 143, 443
FatI	CATG	3 cut(s)	135, 483, 511
Fnu4HI	GCNGC	2 cut(s)	195, 440
FokI	GGATG	2 cut(s)	371, 476
Fsp4HI	GCNGC	2 cut(s)	195, 440
FspBI	CTAG	3 cut(s)	374, 389, 500
FspI	TGCGCA	1 cut(s)	383
GlaI	GCGC	1 cut(s)	383
GluI	GCNGC	2 cut(s)	195, 440
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	2 cut(s)	3, 165
HhaI	GCGC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	139, 487, 515
Hin6I	GCGC	1 cut(s)	382
HinP1I	GCGC	1 cut(s)	382
HinfI	GANTC	3 cut(s)	5, 353, 467
HpaII	CCGG	1 cut(s)	182
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	1 cut(s)	524
Hpy188I	TCNGA	2 cut(s)	300, 345
Hpy188III	TCNNGA	2 cut(s)	454, 484
Hpy8I	GTNNAC	1 cut(s)	524
Hpy99I	CGWCG	1 cut(s)	181
HpyAV	CCTTC	4 cut(s)	51, 99, 460, 512
HpyCH4III	ACNGT	2 cut(s)	212, 410
HpyCH4V	TGCA	4 cut(s)	139, 230, 404, 439
HpyF10VI	GCNNNNNNNGC	2 cut(s)	141, 194
HpyF3I	CTNAG	3 cut(s)	33, 249, 299
Hsp92II	CATG	3 cut(s)	139, 487, 515
HspAI	GCGC	1 cut(s)	382
Kzo9I	GATC	1 cut(s)	398
LguI	GCTCTTC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	42
LpnPI	CCDG	6 cut(s)	147, 174, 195, 346, 373, 512
Lsp1109I	GCAGC	1 cut(s)	451
LweI	GCATC	1 cut(s)	393
MaeI	CTAG	3 cut(s)	374, 389, 500
MaeIII	GTNAC	1 cut(s)	260
MalI	GATC	1 cut(s)	400
MboI	GATC	1 cut(s)	398
MboII	GAAGA	3 cut(s)	208, 293, 348
MhlI	GDGCHC	1 cut(s)	250
MluCI	AATT	4 cut(s)	73, 103, 293, 329
MnlI	CCTC	7 cut(s)	19, 130, 141, 215, 265, 385, 471
MspI	CCGG	1 cut(s)	182
MspR9I	CCNGG	2 cut(s)	162, 361
MvaI	CCWGG	2 cut(s)	162, 361
MwoI	GCNNNNNNNGC	2 cut(s)	141, 194
NdeII	GATC	1 cut(s)	398
NlaIII	CATG	3 cut(s)	139, 487, 515
NsbI	TGCGCA	1 cut(s)	383
NspI	RCATGY	1 cut(s)	139
PaeI	GCATGC	1 cut(s)	139
PagI	TCATGA	1 cut(s)	483
PciSI	GCTCTTC	1 cut(s)	276
PfeI	GAWTC	3 cut(s)	5, 353, 467
PkrI	GCNGC	2 cut(s)	196, 441
Psp6I	CCWGG	2 cut(s)	160, 359
PspGI	CCWGG	2 cut(s)	160, 359
SapI	GCTCTTC	1 cut(s)	276
SatI	GCNGC	2 cut(s)	195, 440
Sau3AI	GATC	1 cut(s)	398
ScrFI	CCNGG	2 cut(s)	162, 361
SduI	GDGCHC	1 cut(s)	250
SetI	ASST	8 cut(s)	39, 82, 207, 255, 288, 379, 396, 523
SfaNI	GCATC	1 cut(s)	393
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
SphI	GCATGC	1 cut(s)	139
Sse9I	AATT	4 cut(s)	73, 103, 293, 329
SsiI	CCGC	1 cut(s)	194
SspMI	CTAG	3 cut(s)	374, 389, 500
StyD4I	CCNGG	2 cut(s)	160, 359
TaaI	ACNGT	2 cut(s)	212, 410
TaqI	TCGA	2 cut(s)	397, 423
TasI	AATT	4 cut(s)	73, 103, 293, 329
TauI	GCSGC	1 cut(s)	197
TfiI	GAWTC	3 cut(s)	5, 353, 467
TscAI	CASTG	1 cut(s)	146
TseI	GCWGC	1 cut(s)	439
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	1 cut(s)	284
TspRI	CASTG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	293
XceI	RCATGY	1 cut(s)	139
XspI	CTAG	3 cut(s)	374, 389, 500

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.